RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	FBXO6	Q9NRD1	293 aa	Predicted RBP	4.12	□□□□□ -1.75
SS18-223	ENST00000583595	ZFP57	Q9NU63	452 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	KLHL28	Q9NXS3	571 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	IL36G	Q9NZH8	169 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	MAT2B	Q9NZL9	334 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	CCDC59	Q9P031	241 aa	Known RBP	4.12	□□□□□ -1.75
SS18-223	ENST00000583595	GCNT4	Q9P109	453 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	GLS2	Q9UI32	602 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	ZNF580	Q9UK33	172 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	GINS2	Q9Y248	185 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	DHRS7	Q9Y394	339 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	EXOSC1	Q9Y3B2	195 aa	Known RBP	4.12	□□□□□ -1.75
SS18-223	ENST00000583595	MRPS18C	Q9Y3D5	142 aa	Known RBP	4.12	□□□□□ -1.75
SS18-223	ENST00000583595	AUP1	Q9Y679	476 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	PHRF1	Q9P1Y6	1649 aa	Known RBP	4.12	□□□□□ -1.75
SS18-223	ENST00000583595	NRCAM	Q92823	1304 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	NWD2	Q9ULI1	1742 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	MARF1	Q9Y4F3	1742 aa	Known RBP	4.12	□□□□□ -1.75
SS18-223	ENST00000583595	NPIPA5	A0A0B4J1W7	369 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595		A0A0G2JMP0	313 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595		A0A0X1KG70	313 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	EXOC1L	A0A1B0GW35	172 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	PLSCR5	A0PG75	271 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	PDZK1P1	A8MUH7	402 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	SUPT3H	B4E1H0	165 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	HHLA1	C9JL84	531 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	NPIPA5	E9PKD4	350 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595		F8W036	122 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	GOLGA8S	H3BPF8	625 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	TEX46	H3BTG2	121 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	ZBTB5	O15062	677 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	PPIH	O43447	177 aa	Known RBP	4.11	□□□□□ -1.75
SS18-223	ENST00000583595	TNFSF12	O43508	249 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	GMDS	O60547	372 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	LRAT	O95237	230 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	NPPA	P01160	153 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	APOA1	P02647	267 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	HOXB7	P09629	217 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	PSKH1	P11801	424 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	ZNF26	P17031	533 aa	Predicted RBP	4.11	□□□□□ -1.75
SS18-223	ENST00000583595	RAB3A	P20336	220 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	TUBG1	P23258	451 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	HMGB2	P26583	209 aa	Known RBP	4.11	□□□□□ -1.75
SS18-223	ENST00000583595	ERP29	P30040	261 aa	Known RBP	4.11	□□□□□ -1.75
SS18-223	ENST00000583595	SLC11A1	P49279	550 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	HLCS	P50747	726 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	DHODH	Q02127	395 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	PMS2P3	Q13401	168 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	GCKR	Q14397	625 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	TMEM187	Q14656	261 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	PON2	Q15165	354 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	RAB35	Q15286	201 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	CD226	Q15762	336 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	DGUOK	Q16854	277 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	XKR7	Q5GH72	579 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	WDR25	Q64LD2	544 aa	Predicted RBP	4.11	□□□□□ -1.75
SS18-223	ENST00000583595	ACSM5	Q6NUN0	579 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	SCYL2	Q6P3W7	929 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	TTC33	Q6PID6	262 aa	Predicted RBP	4.11	□□□□□ -1.75
SS18-223	ENST00000583595	VIT	Q6UXI7	678 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	PRSS48	Q7RTY5	328 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	KCNMB4	Q86W47	210 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	GPR137C	Q8N3F9	429 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	FAM83F	Q8NEG4	500 aa	Predicted RBP	4.11	□□□□□ -1.75
SS18-223	ENST00000583595	OR2L3	Q8NG85	312 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	OR6S1	Q8NH40	331 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	LMO3	Q8TAP4	145 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	BLOC1S5	Q8TDH9	187 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	PHF10	Q8WUB8	498 aa	Known RBP	4.11	□□□□□ -1.75
SS18-223	ENST00000583595	TM9SF4	Q92544	642 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	GTF2H4	Q92759	462 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	UFD1	Q92890	307 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	LRRC39	Q96DD0	335 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	TM4SF19	Q96DZ7	209 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	ZNF479	Q96JC4	524 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	LRRC19	Q9H756	370 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	TRIM45	Q9H8W5	580 aa	Predicted RBP	4.11	□□□□□ -1.75
SS18-223	ENST00000583595	ZNF71	Q9NQZ8	489 aa	Predicted RBP	4.11	□□□□□ -1.75
SS18-223	ENST00000583595	TUBG2	Q9NRH3	451 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	SIGLEC8	Q9NYZ4	499 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	PTTG3P	Q9NZH4	202 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	PDP1	Q9P0J1	537 aa	Predicted RBP	4.11	□□□□□ -1.75
SS18-223	ENST00000583595	ARMCX1	Q9P291	453 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	PSMC3IP	Q9P2W1	217 aa	Predicted RBP	4.11	□□□□□ -1.75
SS18-223	ENST00000583595	CA5B	Q9Y2D0	317 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	CSDC2	Q9Y534	153 aa	Known RBP	4.11	□□□□□ -1.75
SS18-223	ENST00000583595	ABCA3	Q99758	1704 aa		4.11	□□□□□ -1.75
SS18-223	ENST00000583595	COL14A1	Q05707	1796 aa	Known RBP	4.11	□□□□□ -1.75
SS18-223	ENST00000583595	MAP2	P11137	1827 aa	Known RBP	4.11	□□□□□ -1.75
SS18-223	ENST00000583595	NRK	Q7Z2Y5	1582 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	ECM29	Q5VYK3	1845 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	GSTTP1	A0A1W2PQM5	241 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	SMIM1	B2RUZ4	78 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	ANKRD63	C9JTQ0	380 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	NPIPA7	E9PJI5	369 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	TMX2-CTNND1	H3BSU7	103 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	ZNF780A	O75290	641 aa	Predicted RBP	4.1	□□□□□ -1.75
SS18-223	ENST00000583595	UPK1B	O75841	260 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	NOL4	O94818	638 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	AP2A2	O94973	939 aa		4.1	□□□□□ -1.75

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