RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 HELZ2Q9BYK8 2649 aaKnown RBP18.31■□□□□ 0.52
CLN3-212ENST00000564574 A6NIZ1 184 aa18.31■□□□□ 0.52
CLN3-212ENST00000564574 ZNF726A6NNF4 738 aa18.31■□□□□ 0.52
CLN3-212ENST00000564574 ZAR1LA6NP61 321 aa18.31■□□□□ 0.52
CLN3-212ENST00000564574 CENPBD1B2RD01 187 aa18.31■□□□□ 0.52
CLN3-212ENST00000564574 MRPL33O75394 65 aaKnown RBP18.31■□□□□ 0.52
CLN3-212ENST00000564574 CTSSP25774 331 aa18.31■□□□□ 0.52
CLN3-212ENST00000564574 UQCRFS1P47985 274 aa18.31■□□□□ 0.52
CLN3-212ENST00000564574 BIDP55957 195 aa18.31■□□□□ 0.52
CLN3-212ENST00000564574 RAP1BP61224 184 aa18.31■□□□□ 0.52
CLN3-212ENST00000564574 RAP1AP62834 184 aa18.31■□□□□ 0.52
CLN3-212ENST00000564574 TOP3AQ13472 1001 aaPredicted RBP18.31■□□□□ 0.52
CLN3-212ENST00000564574 C4orf17Q53FE4 359 aa18.31■□□□□ 0.52
CLN3-212ENST00000564574 ARMC4Q5T2S8 1044 aa18.31■□□□□ 0.52
CLN3-212ENST00000564574 ARIH2OSQ8N7S6 290 aa18.31■□□□□ 0.52
CLN3-212ENST00000564574 OR4Q3Q8NH05 313 aa18.31■□□□□ 0.52
CLN3-212ENST00000564574 PRR7Q8TB68 274 aa18.31■□□□□ 0.52
CLN3-212ENST00000564574 RND1Q92730 232 aa18.31■□□□□ 0.52
CLN3-212ENST00000564574 TXNDC15Q96J42 360 aa18.31■□□□□ 0.52
CLN3-212ENST00000564574 PRRG3Q9BZD7 231 aa18.31■□□□□ 0.52
CLN3-212ENST00000564574 GRIP2Q9C0E4 1043 aa18.31■□□□□ 0.52
CLN3-212ENST00000564574 ADAM18Q9Y3Q7 739 aa18.31■□□□□ 0.52
CLN3-212ENST00000564574 CFAP46Q8IYW2 2715 aa18.3■□□□□ 0.52
CLN3-212ENST00000564574 SLC35F4A4IF30 521 aa18.3■□□□□ 0.52
CLN3-212ENST00000564574 OR6C65A6NJZ3 312 aa18.3■□□□□ 0.52
CLN3-212ENST00000564574 DLGAP1O14490 977 aa18.3■□□□□ 0.52
CLN3-212ENST00000564574 SNAP29O95721 258 aa18.3■□□□□ 0.52
CLN3-212ENST00000564574 IL18BPO95998 194 aa18.3■□□□□ 0.52
CLN3-212ENST00000564574 HMGN1P05114 100 aa18.3■□□□□ 0.52
CLN3-212ENST00000564574 NOS3P29474 1203 aa18.3■□□□□ 0.52
CLN3-212ENST00000564574 ACVR1BP36896 505 aa18.3■□□□□ 0.52
CLN3-212ENST00000564574 KIR2DL2P43627 348 aaPredicted RBP18.3■□□□□ 0.52
CLN3-212ENST00000564574 MYBPC1Q00872 1141 aa18.3■□□□□ 0.52
CLN3-212ENST00000564574 MELKQ14680 651 aa18.3■□□□□ 0.52
CLN3-212ENST00000564574 ZIK1Q3SY52 487 aaPredicted RBP18.3■□□□□ 0.52
CLN3-212ENST00000564574 SLX4IPQ5VYV7 408 aa18.3■□□□□ 0.52
CLN3-212ENST00000564574 NIPAL3Q6P499 406 aa18.3■□□□□ 0.52
CLN3-212ENST00000564574 NAXEQ8NCW5 288 aa18.3■□□□□ 0.52
CLN3-212ENST00000564574 ZNF519Q8TB69 540 aa18.3■□□□□ 0.52
CLN3-212ENST00000564574 ZNF775Q96BV0 537 aaPredicted RBP18.3■□□□□ 0.52
CLN3-212ENST00000564574 Q96M85 177 aa18.3■□□□□ 0.52
CLN3-212ENST00000564574 MBOAT4Q96T53 435 aa18.3■□□□□ 0.52
CLN3-212ENST00000564574 INTS1Q8N201 2190 aaKnown RBP18.3■□□□□ 0.52
CLN3-212ENST00000564574 A0A0G2JNJ9 132 aa18.29■□□□□ 0.52
CLN3-212ENST00000564574 TEX13CA0A0J9YWL9 993 aa18.29■□□□□ 0.52
CLN3-212ENST00000564574 E9PQ18 207 aa18.29■□□□□ 0.52
CLN3-212ENST00000564574 XKRYO14609 159 aa18.29■□□□□ 0.52
CLN3-212ENST00000564574 SLC43A1O75387 559 aa18.29■□□□□ 0.52
CLN3-212ENST00000564574 TNFSF13O75888 250 aa18.29■□□□□ 0.52
CLN3-212ENST00000564574 ZNF432O94892 652 aa18.29■□□□□ 0.52
CLN3-212ENST00000564574 IGHG1P01857 330 aa18.29■□□□□ 0.52
CLN3-212ENST00000564574 NR2C1P13056 603 aa18.29■□□□□ 0.52
CLN3-212ENST00000564574 ACADSP16219 412 aa18.29■□□□□ 0.52
CLN3-212ENST00000564574 OPRM1P35372 400 aa18.29■□□□□ 0.52
CLN3-212ENST00000564574 SIRPAP78324 504 aa18.29■□□□□ 0.52
CLN3-212ENST00000564574 FOXF2Q12947 444 aa18.29■□□□□ 0.52
CLN3-212ENST00000564574 KRR1Q13601 381 aaKnown RBP18.29■□□□□ 0.52
CLN3-212ENST00000564574 CASP12Q6UXS9 341 aa18.29■□□□□ 0.52
CLN3-212ENST00000564574 NUFIP2Q7Z417 695 aaKnown RBP18.29■□□□□ 0.52
CLN3-212ENST00000564574 ADCK1Q86TW2 530 aa18.29■□□□□ 0.52
CLN3-212ENST00000564574 FJX1Q86VR8 437 aa18.29■□□□□ 0.52
CLN3-212ENST00000564574 CNEP1R1Q8N9A8 125 aa18.29■□□□□ 0.52
CLN3-212ENST00000564574 ZNF555Q8NEP9 628 aa18.29■□□□□ 0.52
CLN3-212ENST00000564574 SLC25A44Q96H78 314 aaPredicted RBP18.29■□□□□ 0.52
CLN3-212ENST00000564574 OR2M2Q96R28 347 aa18.29■□□□□ 0.52
CLN3-212ENST00000564574 SNX18Q96RF0 628 aa18.29■□□□□ 0.52
CLN3-212ENST00000564574 EMC6Q9BV81 110 aa18.29■□□□□ 0.52
CLN3-212ENST00000564574 ZNF629Q9UEG4 869 aaPredicted RBP18.29■□□□□ 0.52
CLN3-212ENST00000564574 Q9UFV3 132 aa18.29■□□□□ 0.52
CLN3-212ENST00000564574 KLHL21Q9UJP4 597 aa18.29■□□□□ 0.52
CLN3-212ENST00000564574 RP1L1Q8IWN7 2480 aaPredicted RBP18.29■□□□□ 0.52
CLN3-212ENST00000564574 SLC16A6O15403 523 aa18.28■□□□□ 0.52
CLN3-212ENST00000564574 AHCYL1O43865 530 aa18.28■□□□□ 0.52
CLN3-212ENST00000564574 IFNGP01579 166 aa18.28■□□□□ 0.52
CLN3-212ENST00000564574 POLR2IP36954 125 aaKnown RBP18.28■□□□□ 0.52
CLN3-212ENST00000564574 OR3A2P47893 321 aa18.28■□□□□ 0.52
CLN3-212ENST00000564574 C12orf73Q69YU5 71 aa18.28■□□□□ 0.52
CLN3-212ENST00000564574 ACSM5Q6NUN0 579 aa18.28■□□□□ 0.52
CLN3-212ENST00000564574 JAZF1Q86VZ6 243 aa18.28■□□□□ 0.52
CLN3-212ENST00000564574 ZNF100Q8IYN0 542 aa18.28■□□□□ 0.52
CLN3-212ENST00000564574 TMEM123Q8N131 208 aa18.28■□□□□ 0.52
CLN3-212ENST00000564574 IQCF1Q8N6M8 205 aa18.28■□□□□ 0.52
CLN3-212ENST00000564574 FNDC8Q8TC99 324 aa18.28■□□□□ 0.52
CLN3-212ENST00000564574 ZNF566Q969W8 418 aa18.28■□□□□ 0.52
CLN3-212ENST00000564574 APH1AQ96BI3 265 aa18.28■□□□□ 0.52
CLN3-212ENST00000564574 HRASLS5Q96KN8 279 aa18.28■□□□□ 0.52
CLN3-212ENST00000564574 LRR1Q96L50 414 aa18.28■□□□□ 0.52
CLN3-212ENST00000564574 SLC38A2Q96QD8 506 aa18.28■□□□□ 0.52
CLN3-212ENST00000564574 PITX2Q99697 317 aa18.28■□□□□ 0.52
CLN3-212ENST00000564574 ALG12Q9BV10 488 aa18.28■□□□□ 0.52
CLN3-212ENST00000564574 PIGMQ9H3S5 423 aa18.28■□□□□ 0.52
CLN3-212ENST00000564574 FAM118AQ9NWS6 357 aa18.28■□□□□ 0.52
CLN3-212ENST00000564574 MYO7BQ6PIF6 2116 aa18.28■□□□□ 0.52
CLN3-212ENST00000564574 NCOA6Q14686 2063 aaPredicted RBP18.27■□□□□ 0.52
CLN3-212ENST00000564574 J3QKU1 62 aa18.27■□□□□ 0.52
CLN3-212ENST00000564574 LRRTM2O43300 516 aa18.27■□□□□ 0.52
CLN3-212ENST00000564574 TRMUO75648 421 aaKnown RBP18.27■□□□□ 0.52
CLN3-212ENST00000564574 PGA4P0DJD7 388 aa18.27■□□□□ 0.52
CLN3-212ENST00000564574 PGA3P0DJD8 388 aa18.27■□□□□ 0.52
CLN3-212ENST00000564574 CD8BP10966 210 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms