RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 HOXB1P14653 301 aaPredicted RBP13.64□□□□□ -0.23
VPS39-203ENST00000561797 ACVR1BP36896 505 aa13.64□□□□□ -0.23
VPS39-203ENST00000561797 YAP1P46937 504 aaKnown RBP13.64□□□□□ -0.23
VPS39-203ENST00000561797 ZP4Q12836 540 aa13.64□□□□□ -0.23
VPS39-203ENST00000561797 TNK1Q13470 666 aa13.64□□□□□ -0.23
VPS39-203ENST00000561797 MELKQ14680 651 aa13.64□□□□□ -0.23
VPS39-203ENST00000561797 C11orf71Q6IPW1 123 aa13.64□□□□□ -0.23
VPS39-203ENST00000561797 ZNF544Q6NX49 715 aa13.64□□□□□ -0.23
VPS39-203ENST00000561797 SLC46A3Q7Z3Q1 461 aa13.64□□□□□ -0.23
VPS39-203ENST00000561797 NANOGNBQ7Z5D8 188 aa13.64□□□□□ -0.23
VPS39-203ENST00000561797 CPLX4Q7Z7G2 160 aa13.64□□□□□ -0.23
VPS39-203ENST00000561797 LZICQ8WZA0 190 aa13.64□□□□□ -0.23
VPS39-203ENST00000561797 ULBP2Q9BZM5 246 aa13.64□□□□□ -0.23
VPS39-203ENST00000561797 GRIP2Q9C0E4 1043 aa13.64□□□□□ -0.23
VPS39-203ENST00000561797 POLR2J2Q9GZM3 115 aaKnown RBP13.64□□□□□ -0.23
VPS39-203ENST00000561797 NSRP1Q9H0G5 558 aaKnown RBP13.64□□□□□ -0.23
VPS39-203ENST00000561797 POLR2J3Q9H1A7 115 aaKnown RBP13.64□□□□□ -0.23
VPS39-203ENST00000561797 MYLK2Q9H1R3 596 aa13.64□□□□□ -0.23
VPS39-203ENST00000561797 SEC61A2Q9H9S3 476 aa13.64□□□□□ -0.23
VPS39-203ENST00000561797 POFUT2Q9Y2G5 429 aa13.64□□□□□ -0.23
VPS39-203ENST00000561797 ZNF503-AS2A6NEH8 195 aa13.63□□□□□ -0.23
VPS39-203ENST00000561797 ZNF682O95780 498 aa13.63□□□□□ -0.23
VPS39-203ENST00000561797 LY6G6DO95868 133 aa13.63□□□□□ -0.23
VPS39-203ENST00000561797 CRYAAP02489 173 aa13.63□□□□□ -0.23
VPS39-203ENST00000561797 CELA3BP08861 270 aa13.63□□□□□ -0.23
VPS39-203ENST00000561797 CECR9P0C854 216 aa13.63□□□□□ -0.23
VPS39-203ENST00000561797 CBR1P16152 277 aa13.63□□□□□ -0.23
VPS39-203ENST00000561797 FUT1P19526 365 aa13.63□□□□□ -0.23
VPS39-203ENST00000561797 DRD4P21917 467 aa13.63□□□□□ -0.23
VPS39-203ENST00000561797 PAX7P23759 505 aa13.63□□□□□ -0.23
VPS39-203ENST00000561797 APOBEC3AP31941 199 aaPredicted RBP13.63□□□□□ -0.23
VPS39-203ENST00000561797 LSP1P33241 339 aa13.63□□□□□ -0.23
VPS39-203ENST00000561797 RBM34P42696 430 aaKnown RBP13.63□□□□□ -0.23
VPS39-203ENST00000561797 CSNK1A1P48729 337 aa13.63□□□□□ -0.23
VPS39-203ENST00000561797 GSK3BP49841 420 aa13.63□□□□□ -0.23
VPS39-203ENST00000561797 IDH3GP51553 393 aaPredicted RBP13.63□□□□□ -0.23
VPS39-203ENST00000561797 NAAAQ02083 359 aa13.63□□□□□ -0.23
VPS39-203ENST00000561797 NPRL3Q12980 569 aa13.63□□□□□ -0.23
VPS39-203ENST00000561797 C8orf82Q6P1X6 216 aaPredicted RBP13.63□□□□□ -0.23
VPS39-203ENST00000561797 HACD2Q6Y1H2 254 aa13.63□□□□□ -0.23
VPS39-203ENST00000561797 ZNF813Q6ZN06 617 aa13.63□□□□□ -0.23
VPS39-203ENST00000561797 VTCN1Q7Z7D3 282 aa13.63□□□□□ -0.23
VPS39-203ENST00000561797 TMEM239Q8WW34 195 aa13.63□□□□□ -0.23
VPS39-203ENST00000561797 HTRA1Q92743 480 aa13.63□□□□□ -0.23
VPS39-203ENST00000561797 CMTM5Q96DZ9 223 aa13.63□□□□□ -0.23
VPS39-203ENST00000561797 SGTBQ96EQ0 304 aa13.63□□□□□ -0.23
VPS39-203ENST00000561797 ADAD1Q96M93 576 aaKnown RBP13.63□□□□□ -0.23
VPS39-203ENST00000561797 KATNB1Q9BVA0 655 aa13.63□□□□□ -0.23
VPS39-203ENST00000561797 C20orf141Q9NUB4 165 aa13.63□□□□□ -0.23
VPS39-203ENST00000561797 CRNNQ9UBG3 495 aaPredicted RBP13.63□□□□□ -0.23
VPS39-203ENST00000561797 YLPM1P49750 1951 aaKnown RBP13.63□□□□□ -0.23
VPS39-203ENST00000561797 GMNCA6NCL1 334 aa13.62□□□□□ -0.23
VPS39-203ENST00000561797 SSX4O60224 188 aa13.62□□□□□ -0.23
VPS39-203ENST00000561797 PIP5K1CO60331 668 aa13.62□□□□□ -0.23
VPS39-203ENST00000561797 SNX3O60493 162 aa13.62□□□□□ -0.23
VPS39-203ENST00000561797 OR7A10O76100 309 aa13.62□□□□□ -0.23
VPS39-203ENST00000561797 IGLV1-44P01699 117 aa13.62□□□□□ -0.23
VPS39-203ENST00000561797 HLA-HP01893 362 aa13.62□□□□□ -0.23
VPS39-203ENST00000561797 F13BP05160 661 aa13.62□□□□□ -0.23
VPS39-203ENST00000561797 CD79AP11912 226 aa13.62□□□□□ -0.23
VPS39-203ENST00000561797 B4GALT1P15291 398 aa13.62□□□□□ -0.23
VPS39-203ENST00000561797 NCK1P16333 377 aa13.62□□□□□ -0.23
VPS39-203ENST00000561797 CALCRP30988 508 aa13.62□□□□□ -0.23
VPS39-203ENST00000561797 PSME3P61289 254 aa13.62□□□□□ -0.23
VPS39-203ENST00000561797 GNGT1P63211 74 aa13.62□□□□□ -0.23
VPS39-203ENST00000561797 RPL18Q07020 188 aaKnown RBP13.62□□□□□ -0.23
VPS39-203ENST00000561797 PIGFQ07326 219 aa13.62□□□□□ -0.23
VPS39-203ENST00000561797 ST3GAL3Q11203 375 aa13.62□□□□□ -0.23
VPS39-203ENST00000561797 ETFDHQ16134 617 aa13.62□□□□□ -0.23
VPS39-203ENST00000561797 VHLLQ6RSH7 139 aa13.62□□□□□ -0.23
VPS39-203ENST00000561797 MDP1Q86V88 176 aa13.62□□□□□ -0.23
VPS39-203ENST00000561797 MYPOPQ86VE0 399 aaPredicted RBP13.62□□□□□ -0.23
VPS39-203ENST00000561797 OR6X1Q8NH79 312 aa13.62□□□□□ -0.23
VPS39-203ENST00000561797 FBXO17Q96EF6 278 aa13.62□□□□□ -0.23
VPS39-203ENST00000561797 RHCGQ9UBD6 479 aa13.62□□□□□ -0.23
VPS39-203ENST00000561797 A4GNTQ9UNA3 340 aa13.62□□□□□ -0.23
VPS39-203ENST00000561797 MED31Q9Y3C7 131 aa13.62□□□□□ -0.23
VPS39-203ENST00000561797 SNX13Q9Y5W8 968 aa13.62□□□□□ -0.23
VPS39-203ENST00000561797 SETD2Q9BYW2 2564 aaPredicted RBP13.62□□□□□ -0.23
VPS39-203ENST00000561797 VPS13CQ709C8 3753 aa13.61□□□□□ -0.23
VPS39-203ENST00000561797 FAM171A2A8MVW0 826 aa13.61□□□□□ -0.23
VPS39-203ENST00000561797 RNF223E7ERA6 249 aa13.61□□□□□ -0.23
VPS39-203ENST00000561797 J3KTA2 159 aa13.61□□□□□ -0.23
VPS39-203ENST00000561797 BCL10O95999 233 aa13.61□□□□□ -0.23
VPS39-203ENST00000561797 SERPINA1P01009 418 aa13.61□□□□□ -0.23
VPS39-203ENST00000561797 IGKV3-15P01624 115 aa13.61□□□□□ -0.23
VPS39-203ENST00000561797 IFNW1P05000 195 aa13.61□□□□□ -0.23
VPS39-203ENST00000561797 THRBP10828 461 aa13.61□□□□□ -0.23
VPS39-203ENST00000561797 FUT4P22083 530 aa13.61□□□□□ -0.23
VPS39-203ENST00000561797 IFNA8P32881 189 aa13.61□□□□□ -0.23
VPS39-203ENST00000561797 ARR3P36575 388 aa13.61□□□□□ -0.23
VPS39-203ENST00000561797 AQP2P41181 271 aa13.61□□□□□ -0.23
VPS39-203ENST00000561797 CHRNB3Q05901 458 aa13.61□□□□□ -0.23
VPS39-203ENST00000561797 RAB35Q15286 201 aa13.61□□□□□ -0.23
VPS39-203ENST00000561797 C3orf36Q3SXR2 165 aa13.61□□□□□ -0.23
VPS39-203ENST00000561797 FKBP9P1Q75LS8 142 aa13.61□□□□□ -0.23
VPS39-203ENST00000561797 CBLL1Q75N03 491 aa13.61□□□□□ -0.23
VPS39-203ENST00000561797 CCDC36Q8IYA8 594 aa13.61□□□□□ -0.23
VPS39-203ENST00000561797 MAPK1IP1LQ8NDC0 245 aa13.61□□□□□ -0.23
VPS39-203ENST00000561797 TMEM54Q969K7 222 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms