RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 SLC5A6Q9Y289 635 aa4.92□□□□□ -1.62
VPS13C-209ENST00000560637 EMC9Q9Y3B6 208 aa4.92□□□□□ -1.62
VPS13C-209ENST00000560637 ABCA2Q9BZC7 2435 aa4.92□□□□□ -1.62
VPS13C-209ENST00000560637 DOPEY2Q9Y3R5 2298 aa4.92□□□□□ -1.62
VPS13C-209ENST00000560637 TLN2Q9Y4G6 2542 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 FREM2Q5SZK8 3169 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 CACNA1DQ01668 2161 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 ZNF593O00488 134 aaPredicted RBP4.91□□□□□ -1.62
VPS13C-209ENST00000560637 CD2P06729 351 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 FAM157BP0CG42 384 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 ZNF26P17031 533 aaPredicted RBP4.91□□□□□ -1.62
VPS13C-209ENST00000560637 ENTPD1P49961 510 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 ARFIP1P53367 373 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 RELAQ04206 551 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 MGAT2Q10469 447 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 SELENBP1Q13228 472 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 TUBA3CQ13748 450 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 ALKBH6Q3KRA9 238 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 SWT1Q5T5J6 900 aaKnown RBP4.91□□□□□ -1.62
VPS13C-209ENST00000560637 MRPL14Q6P1L8 145 aaKnown RBP4.91□□□□□ -1.62
VPS13C-209ENST00000560637 TUBA3EQ6PEY2 450 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 DHRS4L2Q6PKH6 230 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 FCRLAQ7L513 359 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 PIWIL3Q7Z3Z3 882 aaKnown RBP4.91□□□□□ -1.62
VPS13C-209ENST00000560637 CCDC71Q8IV32 467 aaPredicted RBP4.91□□□□□ -1.62
VPS13C-209ENST00000560637 LIX1LQ8IVB5 337 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 PACRGLQ8N7B6 248 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 OR2M7Q8NG81 312 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 OR5D18Q8NGL1 313 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 TMEM80Q96HE8 168 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 ZFP3Q96NJ6 502 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 NPAS1Q99742 590 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 MED18Q9BUE0 208 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 SLC25A18Q9H1K4 315 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 NTN4Q9HB63 628 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 CLEC2DQ9UHP7 191 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 OSGIN2Q9Y236 505 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 NUP210Q8TEM1 1887 aaPredicted RBP4.91□□□□□ -1.62
VPS13C-209ENST00000560637 A0A1W2PRQ8 180 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 SLC22A31A6NKX4 558 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 FIGNL2A6NMB9 653 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 PROB1E7EW31 1015 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 NPIPB8E9PQR5 432 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 LOC110117498-PIK3R3F6TDL0 507 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 CBFA2T3O75081 653 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 GCM2O75603 506 aaPredicted RBP4.91□□□□□ -1.62
VPS13C-209ENST00000560637 MPZL1O95297 269 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 ZIC2O95409 532 aaPredicted RBP4.91□□□□□ -1.62
VPS13C-209ENST00000560637 DLGAP3O95886 979 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 CSN2P05814 226 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 CALCBP10092 127 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 CALRP27797 417 aaKnown RBP4.91□□□□□ -1.62
VPS13C-209ENST00000560637 TALDO1P37837 337 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 ADH7P40394 386 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 APOBEC1P41238 236 aaKnown RBP4.91□□□□□ -1.62
VPS13C-209ENST00000560637 DAP3P51398 398 aaKnown RBP4.91□□□□□ -1.62
VPS13C-209ENST00000560637 EMP3P54852 163 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 DSCR4P56555 118 aaPredicted RBP4.91□□□□□ -1.62
VPS13C-209ENST00000560637 PPP3R1P63098 170 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 ROR2Q01974 943 aaKnown RBP4.91□□□□□ -1.62
VPS13C-209ENST00000560637 MAD2L1BPQ15013 274 aaPredicted RBP4.91□□□□□ -1.62
VPS13C-209ENST00000560637 ZNF57Q68EA5 555 aaPredicted RBP4.91□□□□□ -1.62
VPS13C-209ENST00000560637 C22orf42Q6IC83 251 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 ABHD12BQ7Z5M8 362 aaPredicted RBP4.91□□□□□ -1.62
VPS13C-209ENST00000560637 RDH10Q8IZV5 341 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 OR5AS1Q8N127 324 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 BMPERQ8N8U9 685 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 M1APQ8TC57 530 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 ORAI1Q96D31 301 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 C11orf24Q96F05 449 aaPredicted RBP4.91□□□□□ -1.62
VPS13C-209ENST00000560637 C4orf36Q96KX1 117 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 INTS14Q96SY0 518 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 MGLLQ99685 303 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 ALG8Q9BVK2 526 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 TTTY12Q9BZ98 90 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 CDH20Q9HBT6 801 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 MMP25Q9NPA2 562 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 SLC52A3Q9NQ40 469 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 CKLFQ9UBR5 152 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 A0A087WUJ7 227 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 A0A1B0GVI7 797 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 SMIM31A0A1B0GVY4 71 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 MEX3AA1L020 520 aaKnown RBP4.91□□□□□ -1.62
VPS13C-209ENST00000560637 A1L4Q6 167 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 SERTM1A2A2V5 107 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 ZNF99A8MXY4 864 aaPredicted RBP4.91□□□□□ -1.62
VPS13C-209ENST00000560637 SLC43A1O75387 559 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 KHDRBS3O75525 346 aaKnown RBP4.91□□□□□ -1.62
VPS13C-209ENST00000560637 ATF4P18848 351 aaPredicted RBP4.91□□□□□ -1.62
VPS13C-209ENST00000560637 S1PR1P21453 382 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 MSX1P28360 303 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 SHC1P29353 583 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 GSTT1P30711 240 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 PCBP3P57721 371 aaKnown RBP4.91□□□□□ -1.62
VPS13C-209ENST00000560637 PPP2R2BQ00005 443 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 TGFBR3Q03167 851 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 SPHARQ15513 63 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 CEACAM16Q2WEN9 425 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 ANKRD16Q6P6B7 361 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 KCTD18Q6PI47 426 aaPredicted RBP4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms