RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 PIGFQ07326 219 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 RAB39AQ14964 217 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 ACKR1Q16570 336 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 TMEM225Q6GV28 225 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 ZNF773Q6PK81 442 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 AHSA2Q719I0 299 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 TRILQ7L0X0 811 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 PXKQ7Z7A4 578 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 RBMXL3Q8N7X1 1067 aaKnown RBP10.05□□□□□ -0.8
USP3-218ENST00000560202 CYB561A3Q8NBI2 242 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 NPEPL1Q8NDH3 523 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 BBS1Q8NFJ9 593 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 OR13F1Q8NGS4 319 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 OR2V1Q8NHB1 315 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 EXTL1Q92935 676 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 PTP4A1Q93096 173 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 RFKQ969G6 155 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 ABHD17AQ96GS6 310 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 ADGRG7Q96K78 797 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 NMNAT3Q96T66 252 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 HCAR1Q9BXC0 346 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 MFRPQ9BY79 579 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 TXNIPQ9H3M7 391 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 ZDHHC11Q9H8X9 412 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 MED20Q9H944 212 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 CCNB1IP1Q9NPC3 277 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 FKBP14Q9NWM8 211 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 H2AFY2Q9P0M6 372 aaPredicted RBP10.05□□□□□ -0.8
USP3-218ENST00000560202 ERVK-18Q9QC07 812 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.05□□□□□ -0.8
USP3-218ENST00000560202 EFCAB10A6NFE3 127 aa10.04□□□□□ -0.8
USP3-218ENST00000560202 AQP7P3A6NL99 342 aa10.04□□□□□ -0.8
USP3-218ENST00000560202 ZNF814B7Z6K7 855 aa10.04□□□□□ -0.8
USP3-218ENST00000560202 TFECO14948 347 aaPredicted RBP10.04□□□□□ -0.8
USP3-218ENST00000560202 DNPH1O43598 174 aa10.04□□□□□ -0.8
USP3-218ENST00000560202 ITGB2P05107 769 aa10.04□□□□□ -0.8
USP3-218ENST00000560202 HTR1AP08908 422 aa10.04□□□□□ -0.8
USP3-218ENST00000560202 KLK2P20151 261 aa10.04□□□□□ -0.8
USP3-218ENST00000560202 CDKN2AP42771 156 aaKnown RBP10.04□□□□□ -0.8
USP3-218ENST00000560202 LHX2P50458 406 aa10.04□□□□□ -0.8
USP3-218ENST00000560202 AGFG1P52594 562 aaKnown RBP10.04□□□□□ -0.8
USP3-218ENST00000560202 CDH11P55287 796 aa10.04□□□□□ -0.8
USP3-218ENST00000560202 CLDN15P56746 228 aa10.04□□□□□ -0.8
USP3-218ENST00000560202 CARD18P57730 90 aa10.04□□□□□ -0.8
USP3-218ENST00000560202 RAC3P60763 192 aa10.04□□□□□ -0.8
USP3-218ENST00000560202 RPL27P61353 136 aaKnown RBP10.04□□□□□ -0.8
USP3-218ENST00000560202 HSF1Q00613 529 aa10.04□□□□□ -0.8
USP3-218ENST00000560202 POU3F1Q03052 451 aaPredicted RBP10.04□□□□□ -0.8
USP3-218ENST00000560202 KRR1Q13601 381 aaKnown RBP10.04□□□□□ -0.8
USP3-218ENST00000560202 MESTQ5EB52 335 aa10.04□□□□□ -0.8
USP3-218ENST00000560202 HBMQ6B0K9 141 aa10.04□□□□□ -0.8
USP3-218ENST00000560202 NIPAL3Q6P499 406 aa10.04□□□□□ -0.8
USP3-218ENST00000560202 LEG1Q6P5S2 330 aa10.04□□□□□ -0.8
USP3-218ENST00000560202 JAZF1Q86VZ6 243 aa10.04□□□□□ -0.8
USP3-218ENST00000560202 GID4Q8IVV7 300 aa10.04□□□□□ -0.8
USP3-218ENST00000560202 ARIH2OSQ8N7S6 290 aa10.04□□□□□ -0.8
USP3-218ENST00000560202 MYDGFQ969H8 173 aa10.04□□□□□ -0.8
USP3-218ENST00000560202 DDOQ99489 341 aa10.04□□□□□ -0.8
USP3-218ENST00000560202 NAA11Q9BSU3 229 aaPredicted RBP10.04□□□□□ -0.8
USP3-218ENST00000560202 COPS4Q9BT78 406 aa10.04□□□□□ -0.8
USP3-218ENST00000560202 DCUN1D5Q9BTE7 237 aa10.04□□□□□ -0.8
USP3-218ENST00000560202 SRXN1Q9BYN0 137 aa10.04□□□□□ -0.8
USP3-218ENST00000560202 CCDC90BQ9GZT6 254 aa10.04□□□□□ -0.8
USP3-218ENST00000560202 LDAHQ9H6V9 325 aa10.04□□□□□ -0.8
USP3-218ENST00000560202 CNOT2Q9NZN8 540 aaKnown RBP10.04□□□□□ -0.8
USP3-218ENST00000560202 B3GAT1Q9P2W7 334 aa10.04□□□□□ -0.8
USP3-218ENST00000560202 LIPGQ9Y5X9 500 aa10.04□□□□□ -0.8
USP3-218ENST00000560202 CNTRLQ7Z7A1 2325 aa10.04□□□□□ -0.8
USP3-218ENST00000560202 NCKAP5O14513 1909 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 TRGV5A0A0B4J1U4 118 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 LOC102725191A0A1B0GVB3 256 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 A0A1W2PPW3 197 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 MED19A0JLT2 244 aaPredicted RBP10.03□□□□□ -0.8
USP3-218ENST00000560202 OR6C68A6NDL8 312 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 NPIPB13A6NJU9 1138 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 NPIPB4C9JG80 1138 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 NPIPA5E9PKD4 350 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 M0R3G1 203 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 XKRYO14609 159 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 RGS10O43665 173 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 CXCL13O43927 109 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 MRPS14O60783 128 aaKnown RBP10.03□□□□□ -0.8
USP3-218ENST00000560202 RAMP1O60894 148 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 SEC14L2O76054 403 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 ACTL6AO96019 429 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 CDK1P06493 297 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 PIPP12273 146 aaPredicted RBP10.03□□□□□ -0.8
USP3-218ENST00000560202 IFNGR1P15260 489 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 ZNF708P17019 499 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 HTR1FP30939 366 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 ACVR1BP36896 505 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 EIF1AXP47813 144 aaKnown RBP10.03□□□□□ -0.8
USP3-218ENST00000560202 MTNR1AP48039 350 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 DAP3P51398 398 aaKnown RBP10.03□□□□□ -0.8
USP3-218ENST00000560202 CLDN18P56856 261 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 ST3GAL4Q11206 333 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 MELKQ14680 651 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 KLHL12Q53G59 568 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 PDSS1Q5T2R2 415 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 ARMC4Q5T2S8 1044 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms