RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 BCL7BQ9BQE9 202 aa11.13□□□□□ -0.63
SHMT2-230ENST00000557427 CCDC90BQ9GZT6 254 aa11.13□□□□□ -0.63
SHMT2-230ENST00000557427 AASSQ9UDR5 926 aa11.13□□□□□ -0.63
SHMT2-230ENST00000557427 MKLN1Q9UL63 735 aa11.13□□□□□ -0.63
SHMT2-230ENST00000557427 MED12LQ86YW9 2145 aa11.12□□□□□ -0.63
SHMT2-230ENST00000557427 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.12□□□□□ -0.63
SHMT2-230ENST00000557427 NPIPA5A0A0B4J1W7 369 aa11.12□□□□□ -0.63
SHMT2-230ENST00000557427 NPIPA7E9PJI5 369 aa11.12□□□□□ -0.63
SHMT2-230ENST00000557427 H0YC42 278 aa11.12□□□□□ -0.63
SHMT2-230ENST00000557427 TNFSF13O75888 250 aa11.12□□□□□ -0.63
SHMT2-230ENST00000557427 RCBTB2O95199 551 aa11.12□□□□□ -0.63
SHMT2-230ENST00000557427 MT-ND2P03891 347 aa11.12□□□□□ -0.63
SHMT2-230ENST00000557427 OPN1LWP04000 364 aa11.12□□□□□ -0.63
SHMT2-230ENST00000557427 NPIPA8P0DM63 369 aa11.12□□□□□ -0.63
SHMT2-230ENST00000557427 PEPDP12955 493 aa11.12□□□□□ -0.63
SHMT2-230ENST00000557427 SUCLG1P53597 346 aaKnown RBP11.12□□□□□ -0.63
SHMT2-230ENST00000557427 GP2P55259 537 aaKnown RBP11.12□□□□□ -0.63
SHMT2-230ENST00000557427 CLDN18P56856 261 aa11.12□□□□□ -0.63
SHMT2-230ENST00000557427 SNRPGP62308 76 aaKnown RBP11.12□□□□□ -0.63
SHMT2-230ENST00000557427 DYNC1I2Q13409 638 aaKnown RBP11.12□□□□□ -0.63
SHMT2-230ENST00000557427 ENTPD8Q5MY95 495 aa11.12□□□□□ -0.63
SHMT2-230ENST00000557427 TMEM201Q5SNT2 666 aa11.12□□□□□ -0.63
SHMT2-230ENST00000557427 CCDC103Q8IW40 242 aa11.12□□□□□ -0.63
SHMT2-230ENST00000557427 GCNT2Q8N0V5 402 aa11.12□□□□□ -0.63
SHMT2-230ENST00000557427 CLIP4Q8N3C7 705 aa11.12□□□□□ -0.63
SHMT2-230ENST00000557427 GNPDA2Q8TDQ7 276 aa11.12□□□□□ -0.63
SHMT2-230ENST00000557427 TRUB1Q8WWH5 349 aaKnown RBP11.12□□□□□ -0.63
SHMT2-230ENST00000557427 FCGR1BQ92637 280 aa11.12□□□□□ -0.63
SHMT2-230ENST00000557427 SH3YL1Q96HL8 342 aaPredicted RBP11.12□□□□□ -0.63
SHMT2-230ENST00000557427 MCHR1Q99705 422 aa11.12□□□□□ -0.63
SHMT2-230ENST00000557427 G6PC3Q9BUM1 346 aa11.12□□□□□ -0.63
SHMT2-230ENST00000557427 UBQLN4Q9NRR5 601 aa11.12□□□□□ -0.63
SHMT2-230ENST00000557427 CLN6Q9NWW5 311 aa11.12□□□□□ -0.63
SHMT2-230ENST00000557427 CDC42EP3Q9UKI2 254 aa11.12□□□□□ -0.63
SHMT2-230ENST00000557427 VDAC3Q9Y277 283 aa11.12□□□□□ -0.63
SHMT2-230ENST00000557427 EXPH5Q8NEV8 1989 aa11.12□□□□□ -0.63
SHMT2-230ENST00000557427 OR2M5A3KFT3 312 aa11.11□□□□□ -0.63
SHMT2-230ENST00000557427 ALG1L2C9J202 215 aa11.11□□□□□ -0.63
SHMT2-230ENST00000557427 H3BML4 177 aa11.11□□□□□ -0.63
SHMT2-230ENST00000557427 SCDO00767 359 aa11.11□□□□□ -0.63
SHMT2-230ENST00000557427 SEC14L5O43304 696 aa11.11□□□□□ -0.63
SHMT2-230ENST00000557427 TPST2O60704 377 aa11.11□□□□□ -0.63
SHMT2-230ENST00000557427 INMTO95050 263 aa11.11□□□□□ -0.63
SHMT2-230ENST00000557427 PLAUP00749 431 aa11.11□□□□□ -0.63
SHMT2-230ENST00000557427 CDK1P06493 297 aa11.11□□□□□ -0.63
SHMT2-230ENST00000557427 ZNF708P17019 499 aa11.11□□□□□ -0.63
SHMT2-230ENST00000557427 THBS2P35442 1172 aa11.11□□□□□ -0.63
SHMT2-230ENST00000557427 GSSP48637 474 aa11.11□□□□□ -0.63
SHMT2-230ENST00000557427 TBCEQ15813 527 aaPredicted RBP11.11□□□□□ -0.63
SHMT2-230ENST00000557427 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.11□□□□□ -0.63
SHMT2-230ENST00000557427 ZSWIM7Q19AV6 140 aa11.11□□□□□ -0.63
SHMT2-230ENST00000557427 UBE2UQ5VVX9 321 aa11.11□□□□□ -0.63
SHMT2-230ENST00000557427 DNM1P46Q6ZS02 220 aa11.11□□□□□ -0.63
SHMT2-230ENST00000557427 AHSA2Q719I0 299 aa11.11□□□□□ -0.63
SHMT2-230ENST00000557427 ZNF550Q7Z398 422 aa11.11□□□□□ -0.63
SHMT2-230ENST00000557427 P4HA3Q7Z4N8 544 aa11.11□□□□□ -0.63
SHMT2-230ENST00000557427 ZER1Q7Z7L7 766 aa11.11□□□□□ -0.63
SHMT2-230ENST00000557427 ADGRE4PQ86SQ3 457 aa11.11□□□□□ -0.63
SHMT2-230ENST00000557427 RANBP3LQ86VV4 465 aaPredicted RBP11.11□□□□□ -0.63
SHMT2-230ENST00000557427 ANKRD13BQ86YJ7 626 aa11.11□□□□□ -0.63
SHMT2-230ENST00000557427 ACOT11Q8WXI4 607 aaPredicted RBP11.11□□□□□ -0.63
SHMT2-230ENST00000557427 GGHQ92820 318 aa11.11□□□□□ -0.63
SHMT2-230ENST00000557427 C1GALT1C1Q96EU7 318 aa11.11□□□□□ -0.63
SHMT2-230ENST00000557427 COPS4Q9BT78 406 aa11.11□□□□□ -0.63
SHMT2-230ENST00000557427 PIGMQ9H3S5 423 aa11.11□□□□□ -0.63
SHMT2-230ENST00000557427 ARMC7Q9H6L4 198 aa11.11□□□□□ -0.63
SHMT2-230ENST00000557427 SLC25A19Q9HC21 320 aa11.11□□□□□ -0.63
SHMT2-230ENST00000557427 ACOT13Q9NPJ3 140 aa11.11□□□□□ -0.63
SHMT2-230ENST00000557427 CNOT2Q9NZN8 540 aaKnown RBP11.11□□□□□ -0.63
SHMT2-230ENST00000557427 A0A087WUU8 490 aa11.1□□□□□ -0.63
SHMT2-230ENST00000557427 EFCAB10A6NFE3 127 aa11.1□□□□□ -0.63
SHMT2-230ENST00000557427 CPSF4LA6NMK7 179 aaKnown RBP11.1□□□□□ -0.63
SHMT2-230ENST00000557427 FMO6PO60774 539 aa11.1□□□□□ -0.63
SHMT2-230ENST00000557427 TGM6O95932 706 aa11.1□□□□□ -0.63
SHMT2-230ENST00000557427 PIPP12273 146 aaPredicted RBP11.1□□□□□ -0.63
SHMT2-230ENST00000557427 CCNA2P20248 432 aa11.1□□□□□ -0.63
SHMT2-230ENST00000557427 POU1F1P28069 291 aa11.1□□□□□ -0.63
SHMT2-230ENST00000557427 ACVR1BP36896 505 aa11.1□□□□□ -0.63
SHMT2-230ENST00000557427 CLDN15P56746 228 aa11.1□□□□□ -0.63
SHMT2-230ENST00000557427 CLDN20P56880 219 aa11.1□□□□□ -0.63
SHMT2-230ENST00000557427 TSPAN31Q12999 210 aa11.1□□□□□ -0.63
SHMT2-230ENST00000557427 GPR68Q15743 365 aa11.1□□□□□ -0.63
SHMT2-230ENST00000557427 BCL2A1Q16548 175 aa11.1□□□□□ -0.63
SHMT2-230ENST00000557427 TMEM236Q5W0B7 351 aa11.1□□□□□ -0.63
SHMT2-230ENST00000557427 ZNF474Q6S9Z5 364 aaPredicted RBP11.1□□□□□ -0.63
SHMT2-230ENST00000557427 PTCHD4Q6ZW05 846 aa11.1□□□□□ -0.63
SHMT2-230ENST00000557427 GRAMD2AQ8IUY3 354 aa11.1□□□□□ -0.63
SHMT2-230ENST00000557427 PIGXQ8TBF5 258 aa11.1□□□□□ -0.63
SHMT2-230ENST00000557427 PHOSPHO1Q8TCT1 267 aa11.1□□□□□ -0.63
SHMT2-230ENST00000557427 WNT2BQ93097 391 aa11.1□□□□□ -0.63
SHMT2-230ENST00000557427 YIPF6Q96EC8 236 aa11.1□□□□□ -0.63
SHMT2-230ENST00000557427 ZC3HAV1LQ96H79 300 aaKnown RBP11.1□□□□□ -0.63
SHMT2-230ENST00000557427 Q96MT0 163 aa11.1□□□□□ -0.63
SHMT2-230ENST00000557427 TM9SF2Q99805 663 aa11.1□□□□□ -0.63
SHMT2-230ENST00000557427 RHNO1Q9BSD3 238 aa11.1□□□□□ -0.63
SHMT2-230ENST00000557427 MED18Q9BUE0 208 aa11.1□□□□□ -0.63
SHMT2-230ENST00000557427 FUNDC2Q9BWH2 189 aa11.1□□□□□ -0.63
SHMT2-230ENST00000557427 NAA50Q9GZZ1 169 aaKnown RBP11.1□□□□□ -0.63
SHMT2-230ENST00000557427 ENPP5Q9UJA9 477 aa11.1□□□□□ -0.63
SHMT2-230ENST00000557427 PCNX3Q9H6A9 2034 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms