RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 A0A087WUU8 490 aa10.94□□□□□ -0.66
SLIRP-209ENST00000557342 ARPC4-TTLL3A0A0A6YYG9 625 aa10.94□□□□□ -0.66
SLIRP-209ENST00000557342 A0A1W2PR80 420 aa10.94□□□□□ -0.66
SLIRP-209ENST00000557342 DPRXA6NFQ7 191 aa10.94□□□□□ -0.66
SLIRP-209ENST00000557342 ZNF99A8MXY4 864 aaPredicted RBP10.94□□□□□ -0.66
SLIRP-209ENST00000557342 EFCAB9A8MZ26 197 aa10.94□□□□□ -0.66
SLIRP-209ENST00000557342 CENPBD1B2RD01 187 aa10.94□□□□□ -0.66
SLIRP-209ENST00000557342 MCIDASD6RGH6 385 aa10.94□□□□□ -0.66
SLIRP-209ENST00000557342 hCG_2039718K7EN88 272 aa10.94□□□□□ -0.66
SLIRP-209ENST00000557342 HS3ST1O14792 307 aa10.94□□□□□ -0.66
SLIRP-209ENST00000557342 CLOCKO15516 846 aa10.94□□□□□ -0.66
SLIRP-209ENST00000557342 UBOX5O94941 541 aa10.94□□□□□ -0.66
SLIRP-209ENST00000557342 ATE1O95260 518 aa10.94□□□□□ -0.66
SLIRP-209ENST00000557342 SEMG1P04279 462 aa10.94□□□□□ -0.66
SLIRP-209ENST00000557342 FABP3P05413 133 aa10.94□□□□□ -0.66
SLIRP-209ENST00000557342 SAGP10523 405 aaPredicted RBP10.94□□□□□ -0.66
SLIRP-209ENST00000557342 AQP2P41181 271 aa10.94□□□□□ -0.66
SLIRP-209ENST00000557342 CSNK1A1P48729 337 aa10.94□□□□□ -0.66
SLIRP-209ENST00000557342 ZNF83P51522 516 aa10.94□□□□□ -0.66
SLIRP-209ENST00000557342 VLDLRP98155 873 aa10.94□□□□□ -0.66
SLIRP-209ENST00000557342 TRIM25Q14258 630 aaKnown RBP10.94□□□□□ -0.66
SLIRP-209ENST00000557342 TAF11Q15544 211 aa10.94□□□□□ -0.66
SLIRP-209ENST00000557342 CEACAM16Q2WEN9 425 aa10.94□□□□□ -0.66
SLIRP-209ENST00000557342 DNAL1Q4LDG9 190 aa10.94□□□□□ -0.66
SLIRP-209ENST00000557342 ADAM5Q6NVV9 412 aa10.94□□□□□ -0.66
SLIRP-209ENST00000557342 TMPRSS11FQ6ZWK6 438 aa10.94□□□□□ -0.66
SLIRP-209ENST00000557342 TSEN54Q7Z6J9 526 aaKnown RBP10.94□□□□□ -0.66
SLIRP-209ENST00000557342 DHFR2Q86XF0 187 aa10.94□□□□□ -0.66
SLIRP-209ENST00000557342 CCDC36Q8IYA8 594 aa10.94□□□□□ -0.66
SLIRP-209ENST00000557342 DEPDC4Q8N2C3 294 aa10.94□□□□□ -0.66
SLIRP-209ENST00000557342 BCL2L2Q92843 193 aaPredicted RBP10.94□□□□□ -0.66
SLIRP-209ENST00000557342 PIGTQ969N2 578 aa10.94□□□□□ -0.66
SLIRP-209ENST00000557342 ZNF566Q969W8 418 aa10.94□□□□□ -0.66
SLIRP-209ENST00000557342 ZNF347Q96SE7 839 aa10.94□□□□□ -0.66
SLIRP-209ENST00000557342 FOXC2Q99958 501 aa10.94□□□□□ -0.66
SLIRP-209ENST00000557342 ULBP2Q9BZM5 246 aa10.94□□□□□ -0.66
SLIRP-209ENST00000557342 NDEL1Q9GZM8 345 aa10.94□□□□□ -0.66
SLIRP-209ENST00000557342 IL1RAPQ9NPH3 570 aa10.94□□□□□ -0.66
SLIRP-209ENST00000557342 CCM2LQ9NUG4 571 aaPredicted RBP10.94□□□□□ -0.66
SLIRP-209ENST00000557342 NPAP1Q9NZP6 1156 aa10.94□□□□□ -0.66
SLIRP-209ENST00000557342 HIF3AQ9Y2N7 669 aa10.94□□□□□ -0.66
SLIRP-209ENST00000557342 PDZD2O15018 2839 aa10.94□□□□□ -0.66
SLIRP-209ENST00000557342 NOTCH2Q04721 2471 aa10.93□□□□□ -0.66
SLIRP-209ENST00000557342 NPIPB13A6NJU9 1138 aa10.93□□□□□ -0.66
SLIRP-209ENST00000557342 NPIPB4C9JG80 1138 aa10.93□□□□□ -0.66
SLIRP-209ENST00000557342 M0R1B8 84 aa10.93□□□□□ -0.66
SLIRP-209ENST00000557342 EBAG9O00559 213 aa10.93□□□□□ -0.66
SLIRP-209ENST00000557342 ENTPD5O75356 428 aa10.93□□□□□ -0.66
SLIRP-209ENST00000557342 GADD45GO95257 159 aa10.93□□□□□ -0.66
SLIRP-209ENST00000557342 PLAUP00749 431 aa10.93□□□□□ -0.66
SLIRP-209ENST00000557342 IGHG1P01857 330 aa10.93□□□□□ -0.66
SLIRP-209ENST00000557342 F13BP05160 661 aa10.93□□□□□ -0.66
SLIRP-209ENST00000557342 MAKP20794 623 aa10.93□□□□□ -0.66
SLIRP-209ENST00000557342 CD40P25942 277 aa10.93□□□□□ -0.66
SLIRP-209ENST00000557342 ART1P52961 327 aa10.93□□□□□ -0.66
SLIRP-209ENST00000557342 CLRN1P58418 232 aa10.93□□□□□ -0.66
SLIRP-209ENST00000557342 RPS4XP62701 263 aaKnown RBP10.93□□□□□ -0.66
SLIRP-209ENST00000557342 ARF1P84077 181 aaKnown RBP10.93□□□□□ -0.66
SLIRP-209ENST00000557342 MELKQ14680 651 aa10.93□□□□□ -0.66
SLIRP-209ENST00000557342 HIKESHIQ53FT3 197 aa10.93□□□□□ -0.66
SLIRP-209ENST00000557342 ALG10Q5BKT4 473 aa10.93□□□□□ -0.66
SLIRP-209ENST00000557342 FGD3Q5JSP0 725 aa10.93□□□□□ -0.66
SLIRP-209ENST00000557342 PHYHD1Q5SRE7 291 aa10.93□□□□□ -0.66
SLIRP-209ENST00000557342 LCN8Q6JVE9 175 aa10.93□□□□□ -0.66
SLIRP-209ENST00000557342 PODNL1Q6PEZ8 512 aa10.93□□□□□ -0.66
SLIRP-209ENST00000557342 TBPL2Q6SJ96 375 aa10.93□□□□□ -0.66
SLIRP-209ENST00000557342 CYP2R1Q6VVX0 501 aa10.93□□□□□ -0.66
SLIRP-209ENST00000557342 OAFQ86UD1 273 aa10.93□□□□□ -0.66
SLIRP-209ENST00000557342 ZNF611Q8N823 705 aa10.93□□□□□ -0.66
SLIRP-209ENST00000557342 SLC7A13Q8TCU3 470 aa10.93□□□□□ -0.66
SLIRP-209ENST00000557342 AKAP1Q92667 903 aaKnown RBP eCLIP10.93□□□□□ -0.66
SLIRP-209ENST00000557342 TMEM54Q969K7 222 aa10.93□□□□□ -0.66
SLIRP-209ENST00000557342 DHRS1Q96LJ7 313 aa10.93□□□□□ -0.66
SLIRP-209ENST00000557342 BEX4Q9NWD9 120 aaPredicted RBP10.93□□□□□ -0.66
SLIRP-209ENST00000557342 GLTPQ9NZD2 209 aa10.93□□□□□ -0.66
SLIRP-209ENST00000557342 POFUT2Q9Y2G5 429 aa10.93□□□□□ -0.66
SLIRP-209ENST00000557342 ALPK2Q86TB3 2170 aa10.92□□□□□ -0.66
SLIRP-209ENST00000557342 A0A096LPE4 126 aa10.92□□□□□ -0.66
SLIRP-209ENST00000557342 A0A1W2PPZ6 126 aa10.92□□□□□ -0.66
SLIRP-209ENST00000557342 ABCD4O14678 606 aa10.92□□□□□ -0.66
SLIRP-209ENST00000557342 GYG2O15488 501 aa10.92□□□□□ -0.66
SLIRP-209ENST00000557342 TMCC2O75069 709 aa10.92□□□□□ -0.66
SLIRP-209ENST00000557342 PDE5AO76074 875 aa10.92□□□□□ -0.66
SLIRP-209ENST00000557342 DIRAS1O95057 198 aa10.92□□□□□ -0.66
SLIRP-209ENST00000557342 PGA4P0DJD7 388 aa10.92□□□□□ -0.66
SLIRP-209ENST00000557342 PGA3P0DJD8 388 aa10.92□□□□□ -0.66
SLIRP-209ENST00000557342 NR2C1P13056 603 aa10.92□□□□□ -0.66
SLIRP-209ENST00000557342 ACADSP16219 412 aa10.92□□□□□ -0.66
SLIRP-209ENST00000557342 CD53P19397 219 aa10.92□□□□□ -0.66
SLIRP-209ENST00000557342 ATP6V1B2P21281 511 aa10.92□□□□□ -0.66
SLIRP-209ENST00000557342 FUT4P22083 530 aa10.92□□□□□ -0.66
SLIRP-209ENST00000557342 LSM11P83369 360 aaKnown RBP eCLIP10.92□□□□□ -0.66
SLIRP-209ENST00000557342 SPIBQ01892 262 aa10.92□□□□□ -0.66
SLIRP-209ENST00000557342 LAPTM4AQ15012 233 aa10.92□□□□□ -0.66
SLIRP-209ENST00000557342 DEFB113Q30KQ7 82 aa10.92□□□□□ -0.66
SLIRP-209ENST00000557342 C3orf36Q3SXR2 165 aa10.92□□□□□ -0.66
SLIRP-209ENST00000557342 ZNF672Q499Z4 452 aaPredicted RBP10.92□□□□□ -0.66
SLIRP-209ENST00000557342 IQCCQ4KMZ1 466 aa10.92□□□□□ -0.66
SLIRP-209ENST00000557342 ZNF627Q7L945 461 aa10.92□□□□□ -0.66
SLIRP-209ENST00000557342 PIWIL3Q7Z3Z3 882 aaKnown RBP10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms