RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	DUSP5	Q16690	384 aa		4.59	□□□□□ -1.68
SYNE2-223	ENST00000557005	TRMT12	Q53H54	448 aa	Known RBP	4.59	□□□□□ -1.68
SYNE2-223	ENST00000557005	FAM26D	Q5JW98	314 aa		4.59	□□□□□ -1.68
SYNE2-223	ENST00000557005	MAMDC2	Q7Z304	686 aa	Predicted RBP	4.59	□□□□□ -1.68
SYNE2-223	ENST00000557005	AMER3	Q8N944	861 aa		4.59	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZNF511	Q8NB15	262 aa		4.59	□□□□□ -1.68
SYNE2-223	ENST00000557005	OR51Q1	Q8NH59	317 aa		4.59	□□□□□ -1.68
SYNE2-223	ENST00000557005	GOT1L1	Q8NHS2	421 aa	Predicted RBP	4.59	□□□□□ -1.68
SYNE2-223	ENST00000557005	TOMM40L	Q969M1	308 aa		4.59	□□□□□ -1.68
SYNE2-223	ENST00000557005	NXPE3	Q969Y0	559 aa		4.59	□□□□□ -1.68
SYNE2-223	ENST00000557005	C10orf90	Q96M02	699 aa		4.59	□□□□□ -1.68
SYNE2-223	ENST00000557005	LDHAL6B	Q9BYZ2	381 aa	Predicted RBP	4.59	□□□□□ -1.68
SYNE2-223	ENST00000557005	ANKRD19P	Q9H560	264 aa		4.59	□□□□□ -1.68
SYNE2-223	ENST00000557005	CA10	Q9NS85	328 aa		4.59	□□□□□ -1.68
SYNE2-223	ENST00000557005	LSM2	Q9Y333	95 aa	Known RBP	4.59	□□□□□ -1.68
SYNE2-223	ENST00000557005	PUS1	Q9Y606	427 aa	Known RBP eCLIP	4.59	□□□□□ -1.68
SYNE2-223	ENST00000557005	TNS1	Q9HBL0	1735 aa	Known RBP	4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005		A0A1B0GWA3	101 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	AGAP14	A8MT82	685 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	P2RX6	O15547	441 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	BCL2L11	O43521	198 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	POU3F4	P49335	361 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	DEFA6	Q01524	100 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	CLINT1	Q14677	625 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005		Q5BKY6	102 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	LDLRAD1	Q5T700	205 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	LCN10	Q6JVE6	187 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	MFSD12	Q6NUT3	480 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	SLC16A9	Q7RTY1	509 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	LSR	Q86X29	649 aa	Predicted RBP	4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZNF440	Q8IYI8	595 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	GABRG1	Q8N1C3	465 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	SCGB1C1	Q8TD33	95 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZFYVE21	Q9BQ24	234 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	MRI1	Q9BV20	369 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	MBNL1	Q9NR56	388 aa	Known RBP	4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	DNMT3B	Q9UBC3	853 aa	Known RBP	4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	RPH3A	Q9Y2J0	694 aa	Predicted RBP	4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	TMEM14A	Q9Y6G1	99 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	WDR90	Q96KV7	1748 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	RALGAPA2	Q2PPJ7	1873 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	DCTN6	O00399	190 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	KCNAB3	O43448	404 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	OR4E1	P0C645	316 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	HOXB2	P14652	356 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	S100P	P25815	95 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	GLP1R	P43220	463 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	MAP2K6	P52564	334 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	MEP1B	Q16820	701 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	FAM69B	Q5VUD6	431 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	WBP2NL	Q6ICG8	309 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	PAPD4	Q6PIY7	484 aa	Known RBP	4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	STAC2	Q6ZMT1	411 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	DPY19L2P2	Q6ZN68	376 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	TMEM182	Q6ZP80	229 aa	Predicted RBP	4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	FAM57B	Q71RH2	274 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	PGAP1	Q75T13	922 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	CAMKMT	Q7Z624	323 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	OR10R2	Q8NGX6	335 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	RNF141	Q8WVD5	230 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	THRSP	Q92748	146 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	HOXB13	Q92826	284 aa	Predicted RBP	4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	SUCNR1	Q9BXA5	334 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	GSX2	Q9BZM3	304 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZDHHC5	Q9C0B5	715 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	IFT22	Q9H7X7	185 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	PRODH2	Q9UF12	536 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	PRELID3B	Q9Y3B1	194 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	EMC9	Q9Y3B6	208 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	TMEM272	A0A1B0GTI8	110 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	FAM230A	A0A1W2PPH8	454 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	TSPAN11	A1L157	253 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	PRAMEF27	A3QJZ7	478 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	LINC00862	A6NCI5	91 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	GGT3P	A6NGU5	568 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	SHOX	O15266	292 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	PRKN	O60260	465 aa	Predicted RBP	4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	ATG12	O94817	140 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	CD3D	P04234	171 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	TMEM225B	P0DP42	221 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	EPX	P11678	715 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	HMGA1	P17096	107 aa	Known RBP	4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	PGC	P20142	388 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	SERPINF1	P36955	418 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	PRAMEF9	Q5VWM5	478 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	C17orf99	Q6UX52	265 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	GAREM2	Q75VX8	874 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	LRRC18	Q8N456	261 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	SLC16A11	Q8NCK7	471 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	OR4C16	Q8NGL9	310 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	OR9A4	Q8NGU2	314 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	DPF3	Q92784	378 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	MS4A6E	Q96DS6	147 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	PDXP	Q96GD0	296 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	MS4A3	Q96HJ5	214 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZNF578	Q96N58	590 aa	Predicted RBP	4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	RSRP1	Q9BUV0	290 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	NIT2	Q9NQR4	276 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	SERINC1	Q9NRX5	453 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	SMCO3	A2RU48	225 aa		4.58	□□□□□ -1.68

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