RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 CTXN1P60606 82 aa14.3□□□□□ -0.12
CHMP1A-209ENST00000550872 GK3PQ14409 553 aa14.3□□□□□ -0.12
CHMP1A-209ENST00000550872 TAF11Q15544 211 aa14.3□□□□□ -0.12
CHMP1A-209ENST00000550872 ACKR1Q16570 336 aa14.3□□□□□ -0.12
CHMP1A-209ENST00000550872 MICAQ29983 383 aa14.3□□□□□ -0.12
CHMP1A-209ENST00000550872 C1orf94Q6P1W5 598 aa14.3□□□□□ -0.12
CHMP1A-209ENST00000550872 PGBD2Q6P3X8 592 aa14.3□□□□□ -0.12
CHMP1A-209ENST00000550872 IGFN1Q86VF2 1251 aa14.3□□□□□ -0.12
CHMP1A-209ENST00000550872 LRRC75AQ8NAA5 344 aa14.3□□□□□ -0.12
CHMP1A-209ENST00000550872 OR9Q2Q8NGE9 314 aa14.3□□□□□ -0.12
CHMP1A-209ENST00000550872 OR6N1Q8NGY5 312 aa14.3□□□□□ -0.12
CHMP1A-209ENST00000550872 OR6X1Q8NH79 312 aa14.3□□□□□ -0.12
CHMP1A-209ENST00000550872 FAM222BQ8WU58 562 aa14.3□□□□□ -0.12
CHMP1A-209ENST00000550872 MARVELD3Q96A59 401 aa14.3□□□□□ -0.12
CHMP1A-209ENST00000550872 S100PBPQ96BU1 408 aa14.3□□□□□ -0.12
CHMP1A-209ENST00000550872 DACH2Q96NX9 599 aa14.3□□□□□ -0.12
CHMP1A-209ENST00000550872 ALKBH3Q96Q83 286 aaPredicted RBP14.3□□□□□ -0.12
CHMP1A-209ENST00000550872 MED18Q9BUE0 208 aa14.3□□□□□ -0.12
CHMP1A-209ENST00000550872 NDEL1Q9GZM8 345 aa14.3□□□□□ -0.12
CHMP1A-209ENST00000550872 MCCC2Q9HCC0 563 aa14.3□□□□□ -0.12
CHMP1A-209ENST00000550872 TAS2R16Q9NYV7 291 aa14.3□□□□□ -0.12
CHMP1A-209ENST00000550872 DNAJB9Q9UBS3 223 aa14.3□□□□□ -0.12
CHMP1A-209ENST00000550872 KCNN3Q9UGI6 736 aa14.3□□□□□ -0.12
CHMP1A-209ENST00000550872 SIGLEC7Q9Y286 467 aa14.3□□□□□ -0.12
CHMP1A-209ENST00000550872 AP4S1Q9Y587 144 aa14.3□□□□□ -0.12
CHMP1A-209ENST00000550872 PRR14LQ5THK1 2151 aa14.29□□□□□ -0.12
CHMP1A-209ENST00000550872 M0R3G1 203 aa14.29□□□□□ -0.12
CHMP1A-209ENST00000550872 PDLIM1O00151 329 aa14.29□□□□□ -0.12
CHMP1A-209ENST00000550872 CASKO14936 926 aa14.29□□□□□ -0.12
CHMP1A-209ENST00000550872 E2F6O75461 281 aa14.29□□□□□ -0.12
CHMP1A-209ENST00000550872 RAD51DO75771 328 aa14.29□□□□□ -0.12
CHMP1A-209ENST00000550872 NDUFB2O95178 105 aa14.29□□□□□ -0.12
CHMP1A-209ENST00000550872 ITGA5P08648 1049 aa14.29□□□□□ -0.12
CHMP1A-209ENST00000550872 EPXP11678 715 aa14.29□□□□□ -0.12
CHMP1A-209ENST00000550872 PPP3CBP16298 524 aa14.29□□□□□ -0.12
CHMP1A-209ENST00000550872 CDH2P19022 906 aaPredicted RBP14.29□□□□□ -0.12
CHMP1A-209ENST00000550872 FPR3P25089 353 aa14.29□□□□□ -0.12
CHMP1A-209ENST00000550872 MPGP29372 298 aa14.29□□□□□ -0.12
CHMP1A-209ENST00000550872 GSSP48637 474 aa14.29□□□□□ -0.12
CHMP1A-209ENST00000550872 IST1P53990 364 aa14.29□□□□□ -0.12
CHMP1A-209ENST00000550872 ROR2Q01974 943 aaKnown RBP14.29□□□□□ -0.12
CHMP1A-209ENST00000550872 TOP3AQ13472 1001 aaPredicted RBP14.29□□□□□ -0.12
CHMP1A-209ENST00000550872 KPNB1Q14974 876 aaKnown RBP14.29□□□□□ -0.12
CHMP1A-209ENST00000550872 HMBOX1Q6NT76 420 aa14.29□□□□□ -0.12
CHMP1A-209ENST00000550872 WDFY1Q8IWB7 410 aa14.29□□□□□ -0.12
CHMP1A-209ENST00000550872 C20orf196Q8IYI0 205 aa14.29□□□□□ -0.12
CHMP1A-209ENST00000550872 GIPC3Q8TF64 312 aa14.29□□□□□ -0.12
CHMP1A-209ENST00000550872 DUS3LQ96G46 650 aaKnown RBP14.29□□□□□ -0.12
CHMP1A-209ENST00000550872 ZC3HAV1LQ96H79 300 aaKnown RBP14.29□□□□□ -0.12
CHMP1A-209ENST00000550872 LRR1Q96L50 414 aa14.29□□□□□ -0.12
CHMP1A-209ENST00000550872 OR10A4Q9H209 315 aa14.29□□□□□ -0.12
CHMP1A-209ENST00000550872 TXNIPQ9H3M7 391 aa14.29□□□□□ -0.12
CHMP1A-209ENST00000550872 B3GAT2Q9NPZ5 323 aa14.29□□□□□ -0.12
CHMP1A-209ENST00000550872 ZNF346Q9UL40 294 aaKnown RBP14.29□□□□□ -0.12
CHMP1A-209ENST00000550872 CRYBG3Q68DQ2 2970 aa14.29□□□□□ -0.12
CHMP1A-209ENST00000550872 DEAF1O75398 565 aaPredicted RBP14.28□□□□□ -0.12
CHMP1A-209ENST00000550872 GASTP01350 101 aa14.28□□□□□ -0.12
CHMP1A-209ENST00000550872 ZNF26P17031 533 aaPredicted RBP14.28□□□□□ -0.12
CHMP1A-209ENST00000550872 CSNK1A1P48729 337 aa14.28□□□□□ -0.12
CHMP1A-209ENST00000550872 ACTR3P61158 418 aa14.28□□□□□ -0.12
CHMP1A-209ENST00000550872 RPL27P61353 136 aaKnown RBP14.28□□□□□ -0.12
CHMP1A-209ENST00000550872 ERVK-25P63136 954 aa14.28□□□□□ -0.12
CHMP1A-209ENST00000550872 TGFBR3Q03167 851 aa14.28□□□□□ -0.12
CHMP1A-209ENST00000550872 TSPAN31Q12999 210 aa14.28□□□□□ -0.12
CHMP1A-209ENST00000550872 STK11Q15831 433 aa14.28□□□□□ -0.12
CHMP1A-209ENST00000550872 ZSCAN26Q16670 478 aa14.28□□□□□ -0.12
CHMP1A-209ENST00000550872 PHYHD1Q5SRE7 291 aa14.28□□□□□ -0.12
CHMP1A-209ENST00000550872 C22orf34Q6ZV56 151 aa14.28□□□□□ -0.12
CHMP1A-209ENST00000550872 LINGO2Q7L985 606 aa14.28□□□□□ -0.12
CHMP1A-209ENST00000550872 HDDC2Q7Z4H3 204 aa14.28□□□□□ -0.12
CHMP1A-209ENST00000550872 AQP11Q8NBQ7 271 aa14.28□□□□□ -0.12
CHMP1A-209ENST00000550872 OR10G2Q8NGC3 310 aa14.28□□□□□ -0.12
CHMP1A-209ENST00000550872 ASB10Q8WXI3 467 aa14.28□□□□□ -0.12
CHMP1A-209ENST00000550872 ZNF566Q969W8 418 aa14.28□□□□□ -0.12
CHMP1A-209ENST00000550872 SLC25A44Q96H78 314 aaPredicted RBP14.28□□□□□ -0.12
CHMP1A-209ENST00000550872 USB1Q9BQ65 265 aaKnown RBP14.28□□□□□ -0.12
CHMP1A-209ENST00000550872 POLDIP3Q9BY77 421 aaKnown RBP14.28□□□□□ -0.12
CHMP1A-209ENST00000550872 GPR35Q9HC97 309 aa14.28□□□□□ -0.12
CHMP1A-209ENST00000550872 ARMC1Q9NVT9 282 aa14.28□□□□□ -0.12
CHMP1A-209ENST00000550872 STX18Q9P2W9 335 aaKnown RBP14.28□□□□□ -0.12
CHMP1A-209ENST00000550872 LRBAP50851 2863 aa14.28□□□□□ -0.12
CHMP1A-209ENST00000550872 NPIPB13A6NJU9 1138 aa14.27□□□□□ -0.13
CHMP1A-209ENST00000550872 NPIPB4C9JG80 1138 aa14.27□□□□□ -0.13
CHMP1A-209ENST00000550872 RPL36A-HNRNPH2H7BZ11 118 aa14.27□□□□□ -0.13
CHMP1A-209ENST00000550872 TRMUO75648 421 aaKnown RBP14.27□□□□□ -0.13
CHMP1A-209ENST00000550872 IGHG1P01857 330 aa14.27□□□□□ -0.13
CHMP1A-209ENST00000550872 CD14P08571 375 aa14.27□□□□□ -0.13
CHMP1A-209ENST00000550872 ACADSP16219 412 aa14.27□□□□□ -0.13
CHMP1A-209ENST00000550872 ACVR1BP36896 505 aa14.27□□□□□ -0.13
CHMP1A-209ENST00000550872 CLRN1P58418 232 aa14.27□□□□□ -0.13
CHMP1A-209ENST00000550872 GABRA6Q16445 453 aa14.27□□□□□ -0.13
CHMP1A-209ENST00000550872 CEACAM16Q2WEN9 425 aa14.27□□□□□ -0.13
CHMP1A-209ENST00000550872 ARMC4Q5T2S8 1044 aa14.27□□□□□ -0.13
CHMP1A-209ENST00000550872 OR7E24Q6IFN5 339 aa14.27□□□□□ -0.13
CHMP1A-209ENST00000550872 ZNF770Q6IQ21 691 aaPredicted RBP14.27□□□□□ -0.13
CHMP1A-209ENST00000550872 ALKBH2Q6NS38 261 aa14.27□□□□□ -0.13
CHMP1A-209ENST00000550872 SMARCD3Q6STE5 483 aa14.27□□□□□ -0.13
CHMP1A-209ENST00000550872 TMEM179BQ7Z7N9 219 aa14.27□□□□□ -0.13
CHMP1A-209ENST00000550872 WFDC8Q8IUA0 241 aa14.27□□□□□ -0.13
CHMP1A-209ENST00000550872 TMEM54Q969K7 222 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms