RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 SNCBQ16143 134 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 FXNQ16595 210 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 GSG1Q2KHT4 349 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 CASC10Q5T4H9 136 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 TMEM225Q6GV28 225 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 C11orf88Q6PI97 169 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 BRD3OSQ6XYD6 125 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 GRINAQ7Z429 371 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 C10orf107Q8IVU9 208 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 GPR137CQ8N3F9 429 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 PTGR2Q8N8N7 351 aaPredicted RBP7.72□□□□□ -1.17
USP28-205ENST00000537706 SPERTQ8NA61 448 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 OR4F17Q8NGA8 305 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 SYNPRQ8TBG9 265 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 C11orf40Q8WZ69 217 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 ZNF385AQ96PM9 386 aaKnown RBP7.72□□□□□ -1.17
USP28-205ENST00000537706 OR4F4Q96R69 305 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 C20orf27Q9GZN8 174 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 TET2Q6N021 2002 aaPredicted RBP7.72□□□□□ -1.17
USP28-205ENST00000537706 ZNF816-ZNF321PA0A0X1KG74 233 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 G3V2L1 256 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 CSTAP01040 98 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 F13BP05160 661 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 ZNF35P13682 527 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 CD33P20138 364 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 CD80P33681 288 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 SLC6A9P48067 706 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 ABCE1P61221 599 aaKnown RBP7.72□□□□□ -1.17
USP28-205ENST00000537706 GNB2P62879 340 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 RAE1P78406 368 aaKnown RBP7.72□□□□□ -1.17
USP28-205ENST00000537706 TMEM155Q4W5P6 130 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 PGBD2Q6P3X8 592 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 ZYG11AQ6WRX3 759 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 MUC7Q8TAX7 377 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 SORT1Q99523 831 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 CCDC106Q9BWC9 280 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 OR11A1Q9GZK7 315 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 NELFAQ9H3P2 528 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 PIGUQ9H490 435 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 TMEM165Q9HC07 324 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 MARCOQ9UEW3 520 aaPredicted RBP7.72□□□□□ -1.17
USP28-205ENST00000537706 EGFL7Q9UHF1 273 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 HAO1Q9UJM8 370 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 TRIM33Q9UPN9 1127 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 LRCH1Q9Y2L9 728 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 GPR45Q9Y5Y3 372 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 STX16-NPEPL1H3BU86 382 aa7.71□□□□□ -1.18
USP28-205ENST00000537706 MANBAO00462 879 aa7.71□□□□□ -1.18
USP28-205ENST00000537706 STX16O14662 325 aa7.71□□□□□ -1.18
USP28-205ENST00000537706 ITM2AO43736 263 aa7.71□□□□□ -1.18
USP28-205ENST00000537706 CCDC22O60826 627 aa7.71□□□□□ -1.18
USP28-205ENST00000537706 SMIM24O75264 130 aa7.71□□□□□ -1.18
USP28-205ENST00000537706 LYPLA1O75608 230 aaPredicted RBP7.71□□□□□ -1.18
USP28-205ENST00000537706 VAMP5O95183 116 aa7.71□□□□□ -1.18
USP28-205ENST00000537706 ATP6V1G2O95670 118 aa7.71□□□□□ -1.18
USP28-205ENST00000537706 GPIP06744 558 aa7.71□□□□□ -1.18
USP28-205ENST00000537706 CCNA2P20248 432 aa7.71□□□□□ -1.18
USP28-205ENST00000537706 CALB2P22676 271 aa7.71□□□□□ -1.18
USP28-205ENST00000537706 HMOX2P30519 316 aa7.71□□□□□ -1.18
USP28-205ENST00000537706 AQP5P55064 265 aa7.71□□□□□ -1.18
USP28-205ENST00000537706 BTKQ06187 659 aa7.71□□□□□ -1.18
USP28-205ENST00000537706 DCST2Q5T1A1 773 aa7.71□□□□□ -1.18
USP28-205ENST00000537706 DDX59Q5T1V6 619 aaKnown RBP eCLIP7.71□□□□□ -1.18
USP28-205ENST00000537706 FRRS1Q6ZNA5 592 aa7.71□□□□□ -1.18
USP28-205ENST00000537706 EIF3MQ7L2H7 374 aaKnown RBP7.71□□□□□ -1.18
USP28-205ENST00000537706 ZNF551Q7Z340 670 aaPredicted RBP7.71□□□□□ -1.18
USP28-205ENST00000537706 CENPLQ8N0S6 344 aaPredicted RBP7.71□□□□□ -1.18
USP28-205ENST00000537706 ZIC4Q8N9L1 334 aa7.71□□□□□ -1.18
USP28-205ENST00000537706 CDS1Q92903 461 aa7.71□□□□□ -1.18
USP28-205ENST00000537706 SLC7A6OSQ96CW6 309 aaPredicted RBP7.71□□□□□ -1.18
USP28-205ENST00000537706 NEURL3Q96EH8 262 aa7.71□□□□□ -1.18
USP28-205ENST00000537706 TBX15Q96SF7 602 aa7.71□□□□□ -1.18
USP28-205ENST00000537706 TAPBPLQ9BX59 468 aa7.71□□□□□ -1.18
USP28-205ENST00000537706 PCTPQ9UKL6 214 aa7.71□□□□□ -1.18
USP28-205ENST00000537706 CACNG2Q9Y698 323 aa7.71□□□□□ -1.18
USP28-205ENST00000537706 GIMAP1-GIMAP5A0A087WTJ2 511 aa7.7□□□□□ -1.18
USP28-205ENST00000537706 RPL36A-HNRNPH2H7BZ11 118 aa7.7□□□□□ -1.18
USP28-205ENST00000537706 TRIM13O60858 407 aa7.7□□□□□ -1.18
USP28-205ENST00000537706 SLC43A1O75387 559 aa7.7□□□□□ -1.18
USP28-205ENST00000537706 UPK3AO75631 287 aa7.7□□□□□ -1.18
USP28-205ENST00000537706 TSPAN9O75954 239 aa7.7□□□□□ -1.18
USP28-205ENST00000537706 RSL1D1O76021 490 aaKnown RBP7.7□□□□□ -1.18
USP28-205ENST00000537706 KLHL2O95198 593 aa7.7□□□□□ -1.18
USP28-205ENST00000537706 SELENOPP49908 381 aa7.7□□□□□ -1.18
USP28-205ENST00000537706 MAP2K6P52564 334 aa7.7□□□□□ -1.18
USP28-205ENST00000537706 SKP2Q13309 424 aa7.7□□□□□ -1.18
USP28-205ENST00000537706 LIPMQ5VYY2 423 aa7.7□□□□□ -1.18
USP28-205ENST00000537706 FAM71E1Q6IPT2 247 aa7.7□□□□□ -1.18
USP28-205ENST00000537706 NOXRED1Q6NXP6 359 aa7.7□□□□□ -1.18
USP28-205ENST00000537706 STON2Q8WXE9 905 aa7.7□□□□□ -1.18
USP28-205ENST00000537706 RAB40AQ8WXH6 277 aa7.7□□□□□ -1.18
USP28-205ENST00000537706 PHF21BQ96EK2 531 aa7.7□□□□□ -1.18
USP28-205ENST00000537706 GIMAP5Q96F15 307 aa7.7□□□□□ -1.18
USP28-205ENST00000537706 OTUB1Q96FW1 271 aaPredicted RBP7.7□□□□□ -1.18
USP28-205ENST00000537706 PLEKHA8Q96JA3 519 aa7.7□□□□□ -1.18
USP28-205ENST00000537706 DCLRE1CQ96SD1 692 aaKnown RBP7.7□□□□□ -1.18
USP28-205ENST00000537706 ARL8BQ9NVJ2 186 aa7.7□□□□□ -1.18
USP28-205ENST00000537706 FAF1Q9UNN5 650 aaPredicted RBP7.7□□□□□ -1.18
USP28-205ENST00000537706 PLXNB1O43157 2135 aa7.7□□□□□ -1.18
USP28-205ENST00000537706 IGHV2-70DA0A0C4DH43 119 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms