RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 SEC23BQ15437 767 aa17.41■□□□□ 0.38
CPSF1-209ENST00000532725 DNAL1Q4LDG9 190 aa17.41■□□□□ 0.38
CPSF1-209ENST00000532725 C1QTNF12Q5T7M4 302 aa17.41■□□□□ 0.38
CPSF1-209ENST00000532725 RRM2BQ7LG56 351 aa17.41■□□□□ 0.38
CPSF1-209ENST00000532725 CDH24Q86UP0 819 aa17.41■□□□□ 0.38
CPSF1-209ENST00000532725 CDK20Q8IZL9 346 aa17.41■□□□□ 0.38
CPSF1-209ENST00000532725 OR52J3Q8NH60 311 aa17.41■□□□□ 0.38
CPSF1-209ENST00000532725 TNFRSF13CQ96RJ3 184 aa17.41■□□□□ 0.38
CPSF1-209ENST00000532725 SEPHS2Q99611 448 aa17.41■□□□□ 0.38
CPSF1-209ENST00000532725 CRLF2Q9HC73 371 aa17.41■□□□□ 0.38
CPSF1-209ENST00000532725 INIPQ9NRY2 104 aa17.41■□□□□ 0.38
CPSF1-209ENST00000532725 NPAP1Q9NZP6 1156 aa17.41■□□□□ 0.38
CPSF1-209ENST00000532725 EFCAB9A8MZ26 197 aa17.4■□□□□ 0.38
CPSF1-209ENST00000532725 BCL10O95999 233 aa17.4■□□□□ 0.38
CPSF1-209ENST00000532725 PLAUP00749 431 aa17.4■□□□□ 0.38
CPSF1-209ENST00000532725 SMIM11AP58511 58 aa17.4■□□□□ 0.38
CPSF1-209ENST00000532725 ARF1P84077 181 aaKnown RBP17.4■□□□□ 0.38
CPSF1-209ENST00000532725 TRAP1Q12931 704 aaKnown RBP17.4■□□□□ 0.38
CPSF1-209ENST00000532725 CEACAM16Q2WEN9 425 aa17.4■□□□□ 0.38
CPSF1-209ENST00000532725 ANKDD1AQ495B1 522 aa17.4■□□□□ 0.38
CPSF1-209ENST00000532725 HIKESHIQ53FT3 197 aa17.4■□□□□ 0.38
CPSF1-209ENST00000532725 ZDHHC21Q8IVQ6 265 aa17.4■□□□□ 0.38
CPSF1-209ENST00000532725 LRRC75AQ8NAA5 344 aa17.4■□□□□ 0.38
CPSF1-209ENST00000532725 TMEM54Q969K7 222 aa17.4■□□□□ 0.38
CPSF1-209ENST00000532725 SLC25A44Q96H78 314 aaPredicted RBP17.4■□□□□ 0.38
CPSF1-209ENST00000532725 ZNF347Q96SE7 839 aa17.4■□□□□ 0.38
CPSF1-209ENST00000532725 ST6GALNAC2Q9UJ37 374 aa17.4■□□□□ 0.38
CPSF1-209ENST00000532725 MYO9AB2RTY4 2548 aa17.39■□□□□ 0.37
CPSF1-209ENST00000532725 A0A1W2PRG6 482 aa17.39■□□□□ 0.37
CPSF1-209ENST00000532725 CDC42EP2O14613 210 aa17.39■□□□□ 0.37
CPSF1-209ENST00000532725 CLOCKO15516 846 aa17.39■□□□□ 0.37
CPSF1-209ENST00000532725 PTP4A3O75365 173 aa17.39■□□□□ 0.37
CPSF1-209ENST00000532725 SAGP10523 405 aaPredicted RBP17.39■□□□□ 0.37
CPSF1-209ENST00000532725 MAGEA2P43356 314 aa17.39■□□□□ 0.37
CPSF1-209ENST00000532725 OMPP47874 163 aa17.39■□□□□ 0.37
CPSF1-209ENST00000532725 SLC9A3P48764 834 aa17.39■□□□□ 0.37
CPSF1-209ENST00000532725 SH3BGRP55822 239 aaPredicted RBP17.39■□□□□ 0.37
CPSF1-209ENST00000532725 MELKQ14680 651 aa17.39■□□□□ 0.37
CPSF1-209ENST00000532725 ACKR1Q16570 336 aa17.39■□□□□ 0.37
CPSF1-209ENST00000532725 TBRG1Q3YBR2 411 aa17.39■□□□□ 0.37
CPSF1-209ENST00000532725 FGD3Q5JSP0 725 aa17.39■□□□□ 0.37
CPSF1-209ENST00000532725 ANKRD16Q6P6B7 361 aa17.39■□□□□ 0.37
CPSF1-209ENST00000532725 LRFN4Q6PJG9 635 aa17.39■□□□□ 0.37
CPSF1-209ENST00000532725 OAFQ86UD1 273 aa17.39■□□□□ 0.37
CPSF1-209ENST00000532725 OR6N1Q8NGY5 312 aa17.39■□□□□ 0.37
CPSF1-209ENST00000532725 OR51A7Q8NH64 312 aa17.39■□□□□ 0.37
CPSF1-209ENST00000532725 MAGEE2Q8TD90 523 aaPredicted RBP17.39■□□□□ 0.37
CPSF1-209ENST00000532725 CCDC124Q96CT7 223 aaKnown RBP17.39■□□□□ 0.37
CPSF1-209ENST00000532725 NELFAQ9H3P2 528 aa17.39■□□□□ 0.37
CPSF1-209ENST00000532725 ESRP2Q9H6T0 727 aaKnown RBP17.39■□□□□ 0.37
CPSF1-209ENST00000532725 AMDHD2Q9Y303 409 aa17.39■□□□□ 0.37
CPSF1-209ENST00000532725 TRAV27A0A087WT01 109 aa17.38■□□□□ 0.37
CPSF1-209ENST00000532725 SH3PXD2BA1X283 911 aa17.38■□□□□ 0.37
CPSF1-209ENST00000532725 GSC2O15499 205 aa17.38■□□□□ 0.37
CPSF1-209ENST00000532725 DNAJC8O75937 253 aaPredicted RBP17.38■□□□□ 0.37
CPSF1-209ENST00000532725 GADD45GO95257 159 aa17.38■□□□□ 0.37
CPSF1-209ENST00000532725 HOXB1P14653 301 aaPredicted RBP17.38■□□□□ 0.37
CPSF1-209ENST00000532725 GPR4P46093 362 aa17.38■□□□□ 0.37
CPSF1-209ENST00000532725 HMGA2P52926 109 aa17.38■□□□□ 0.37
CPSF1-209ENST00000532725 PRPS1P60891 318 aa17.38■□□□□ 0.37
CPSF1-209ENST00000532725 RUNX1T1Q06455 604 aa17.38■□□□□ 0.37
CPSF1-209ENST00000532725 BSPH1Q075Z2 132 aa17.38■□□□□ 0.37
CPSF1-209ENST00000532725 HIST3H3Q16695 136 aa17.38■□□□□ 0.37
CPSF1-209ENST00000532725 ALG10Q5BKT4 473 aa17.38■□□□□ 0.37
CPSF1-209ENST00000532725 ARMC4Q5T2S8 1044 aa17.38■□□□□ 0.37
CPSF1-209ENST00000532725 OR4K5Q8NGD3 323 aa17.38■□□□□ 0.37
CPSF1-209ENST00000532725 LILRB1Q8NHL6 650 aaPredicted RBP17.38■□□□□ 0.37
CPSF1-209ENST00000532725 ASB10Q8WXI3 467 aa17.38■□□□□ 0.37
CPSF1-209ENST00000532725 POP5Q969H6 163 aaKnown RBP17.38■□□□□ 0.37
CPSF1-209ENST00000532725 ZNF566Q969W8 418 aa17.38■□□□□ 0.37
CPSF1-209ENST00000532725 C1QTNF6Q9BXI9 259 aa17.38■□□□□ 0.37
CPSF1-209ENST00000532725 CADM1Q9BY67 442 aaKnown RBP17.38■□□□□ 0.37
CPSF1-209ENST00000532725 MRPL13Q9BYD1 178 aaKnown RBP17.38■□□□□ 0.37
CPSF1-209ENST00000532725 MAGIXQ9H6Y5 334 aa17.38■□□□□ 0.37
CPSF1-209ENST00000532725 OBP2BQ9NPH6 170 aa17.38■□□□□ 0.37
CPSF1-209ENST00000532725 B3GAT2Q9NPZ5 323 aa17.38■□□□□ 0.37
CPSF1-209ENST00000532725 GLTPQ9NZD2 209 aa17.38■□□□□ 0.37
CPSF1-209ENST00000532725 TMEM5Q9Y2B1 443 aa17.38■□□□□ 0.37
CPSF1-209ENST00000532725 A0A096LPE4 126 aa17.37■□□□□ 0.37
CPSF1-209ENST00000532725 A0A1W2PPZ6 126 aa17.37■□□□□ 0.37
CPSF1-209ENST00000532725 NPIPB13A6NJU9 1138 aa17.37■□□□□ 0.37
CPSF1-209ENST00000532725 ZNF99A8MXY4 864 aaPredicted RBP17.37■□□□□ 0.37
CPSF1-209ENST00000532725 NPIPB4C9JG80 1138 aa17.37■□□□□ 0.37
CPSF1-209ENST00000532725 CD3EP07766 207 aa17.37■□□□□ 0.37
CPSF1-209ENST00000532725 PGA4P0DJD7 388 aa17.37■□□□□ 0.37
CPSF1-209ENST00000532725 PGA3P0DJD8 388 aa17.37■□□□□ 0.37
CPSF1-209ENST00000532725 ZNF26P17031 533 aaPredicted RBP17.37■□□□□ 0.37
CPSF1-209ENST00000532725 RRM2P31350 389 aa17.37■□□□□ 0.37
CPSF1-209ENST00000532725 LIMS1P48059 325 aa17.37■□□□□ 0.37
CPSF1-209ENST00000532725 CSNK1A1P48729 337 aa17.37■□□□□ 0.37
CPSF1-209ENST00000532725 SPIBQ01892 262 aa17.37■□□□□ 0.37
CPSF1-209ENST00000532725 ZBED5Q49AG3 693 aa17.37■□□□□ 0.37
CPSF1-209ENST00000532725 ZNF704Q6ZNC4 412 aaPredicted RBP17.37■□□□□ 0.37
CPSF1-209ENST00000532725 ZNF627Q7L945 461 aa17.37■□□□□ 0.37
CPSF1-209ENST00000532725 OR13C2Q8NGS9 318 aa17.37■□□□□ 0.37
CPSF1-209ENST00000532725 NINJ1Q92982 152 aa17.37■□□□□ 0.37
CPSF1-209ENST00000532725 FAM46AQ96IP4 442 aaKnown RBP17.37■□□□□ 0.37
CPSF1-209ENST00000532725 GPA33Q99795 319 aa17.37■□□□□ 0.37
CPSF1-209ENST00000532725 TXNIPQ9H3M7 391 aa17.37■□□□□ 0.37
CPSF1-209ENST00000532725 ARPC4-TTLL3A0A0A6YYG9 625 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms