RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 SPAG7O75391 227 aa2.37□□□□□ -2.03
USP40-209ENST00000452724 MED6O75586 246 aa2.37□□□□□ -2.03
USP40-209ENST00000452724 UPK3AO75631 287 aa2.37□□□□□ -2.03
USP40-209ENST00000452724 OR7A10O76100 309 aa2.37□□□□□ -2.03
USP40-209ENST00000452724 TSPAN12O95859 305 aa2.37□□□□□ -2.03
USP40-209ENST00000452724 FGF1P05230 155 aa2.37□□□□□ -2.03
USP40-209ENST00000452724 PPIAL4FP0DN26 164 aa2.37□□□□□ -2.03
USP40-209ENST00000452724 NPBWR2P48146 333 aa2.37□□□□□ -2.03
USP40-209ENST00000452724 CEBPDP49716 269 aaPredicted RBP2.37□□□□□ -2.03
USP40-209ENST00000452724 MNAT1P51948 309 aa2.37□□□□□ -2.03
USP40-209ENST00000452724 ZNF136P52737 540 aa2.37□□□□□ -2.03
USP40-209ENST00000452724 AIF1P55008 147 aa2.37□□□□□ -2.03
USP40-209ENST00000452724 MRPL28Q13084 256 aaKnown RBP2.37□□□□□ -2.03
USP40-209ENST00000452724 CHIT1Q13231 466 aa2.37□□□□□ -2.03
USP40-209ENST00000452724 DEFB116Q30KQ4 102 aa2.37□□□□□ -2.03
USP40-209ENST00000452724 ZBED5Q49AG3 693 aa2.37□□□□□ -2.03
USP40-209ENST00000452724 TRIM40Q6P9F5 258 aa2.37□□□□□ -2.03
USP40-209ENST00000452724 H2AFVQ71UI9 128 aa2.37□□□□□ -2.03
USP40-209ENST00000452724 PCP2Q8IVA1 136 aa2.37□□□□□ -2.03
USP40-209ENST00000452724 H1FOOQ8IZA3 346 aaPredicted RBP2.37□□□□□ -2.03
USP40-209ENST00000452724 TPRX1Q8N7U7 411 aa2.37□□□□□ -2.03
USP40-209ENST00000452724 OR1L4Q8NGR5 311 aa2.37□□□□□ -2.03
USP40-209ENST00000452724 ACTRT1Q8TDG2 376 aa2.37□□□□□ -2.03
USP40-209ENST00000452724 CD300LFQ8TDQ1 290 aa2.37□□□□□ -2.03
USP40-209ENST00000452724 AURKBQ96GD4 344 aaPredicted RBP2.37□□□□□ -2.03
USP40-209ENST00000452724 OR8B4Q96RC9 309 aa2.37□□□□□ -2.03
USP40-209ENST00000452724 SORT1Q99523 831 aa2.37□□□□□ -2.03
USP40-209ENST00000452724 CCT7Q99832 543 aa2.37□□□□□ -2.03
USP40-209ENST00000452724 IFI27L2Q9H2X8 130 aa2.37□□□□□ -2.03
USP40-209ENST00000452724 TM9SF3Q9HD45 589 aa2.37□□□□□ -2.03
USP40-209ENST00000452724 PACSIN2Q9UNF0 486 aaPredicted RBP2.37□□□□□ -2.03
USP40-209ENST00000452724 CPLX1O14810 134 aa2.36□□□□□ -2.03
USP40-209ENST00000452724 AIREO43918 545 aa2.36□□□□□ -2.03
USP40-209ENST00000452724 MGRN1O60291 552 aa2.36□□□□□ -2.03
USP40-209ENST00000452724 IL1BP01584 269 aa2.36□□□□□ -2.03
USP40-209ENST00000452724 BGLAPP02818 100 aa2.36□□□□□ -2.03
USP40-209ENST00000452724 ZDHHC11BP0C7U3 371 aa2.36□□□□□ -2.03
USP40-209ENST00000452724 ZNF30P17039 623 aa2.36□□□□□ -2.03
USP40-209ENST00000452724 RORAP35398 523 aa2.36□□□□□ -2.03
USP40-209ENST00000452724 EPS15P42566 896 aa2.36□□□□□ -2.03
USP40-209ENST00000452724 GPR6P46095 362 aaPredicted RBP2.36□□□□□ -2.03
USP40-209ENST00000452724 YAP1P46937 504 aaKnown RBP2.36□□□□□ -2.03
USP40-209ENST00000452724 GYG1P46976 350 aa2.36□□□□□ -2.03
USP40-209ENST00000452724 UBE2AP49459 152 aa2.36□□□□□ -2.03
USP40-209ENST00000452724 ARFIP1P53367 373 aa2.36□□□□□ -2.03
USP40-209ENST00000452724 SUB1P53999 127 aaKnown RBP eCLIP2.36□□□□□ -2.03
USP40-209ENST00000452724 SEC61GP60059 68 aa2.36□□□□□ -2.03
USP40-209ENST00000452724 HMGCS1Q01581 520 aa2.36□□□□□ -2.03
USP40-209ENST00000452724 ENPEPQ07075 957 aa2.36□□□□□ -2.03
USP40-209ENST00000452724 SLAQ13239 276 aa2.36□□□□□ -2.03
USP40-209ENST00000452724 EIF4EBP1Q13541 118 aaPredicted RBP2.36□□□□□ -2.03
USP40-209ENST00000452724 OR2A2Q6IF42 318 aa2.36□□□□□ -2.03
USP40-209ENST00000452724 LYPD2Q6UXB3 125 aa2.36□□□□□ -2.03
USP40-209ENST00000452724 EFL1Q7Z2Z2 1120 aaKnown RBP2.36□□□□□ -2.03
USP40-209ENST00000452724 Q8N976 141 aa2.36□□□□□ -2.03
USP40-209ENST00000452724 ZNF557Q8N988 423 aaPredicted RBP2.36□□□□□ -2.03
USP40-209ENST00000452724 SDR42E1Q8WUS8 393 aa2.36□□□□□ -2.03
USP40-209ENST00000452724 EXOSC8Q96B26 276 aaKnown RBP2.36□□□□□ -2.03
USP40-209ENST00000452724 LRRC58Q96CX6 371 aa2.36□□□□□ -2.03
USP40-209ENST00000452724 PANX2Q96RD6 677 aa2.36□□□□□ -2.03
USP40-209ENST00000452724 CNN2Q99439 309 aaKnown RBP2.36□□□□□ -2.03
USP40-209ENST00000452724 FMO2Q99518 471 aa2.36□□□□□ -2.03
USP40-209ENST00000452724 SLC39A3Q9BRY0 314 aa2.36□□□□□ -2.03
USP40-209ENST00000452724 CRACR2AQ9BSW2 395 aa2.36□□□□□ -2.03
USP40-209ENST00000452724 ANKRD19PQ9H560 264 aa2.36□□□□□ -2.03
USP40-209ENST00000452724 SGK2Q9HBY8 427 aa2.36□□□□□ -2.03
USP40-209ENST00000452724 NECAP2Q9NVZ3 263 aa2.36□□□□□ -2.03
USP40-209ENST00000452724 F11RQ9Y624 299 aaKnown RBP2.36□□□□□ -2.03
USP40-209ENST00000452724 NFASCO94856 1347 aa2.36□□□□□ -2.03
USP40-209ENST00000452724 ZNFX1Q9P2E3 1918 aaKnown RBP2.35□□□□□ -2.03
USP40-209ENST00000452724 IGLV4-60A0A075B6I1 120 aa2.35□□□□□ -2.03
USP40-209ENST00000452724 IGKV1D-13A0A0B4J2D9 117 aa2.35□□□□□ -2.03
USP40-209ENST00000452724 CLRN2A0PK11 232 aa2.35□□□□□ -2.03
USP40-209ENST00000452724 PLAC8L1A1L4L8 177 aa2.35□□□□□ -2.03
USP40-209ENST00000452724 ERVV-1B6SEH8 477 aa2.35□□□□□ -2.03
USP40-209ENST00000452724 ANGPTL7O43827 346 aa2.35□□□□□ -2.03
USP40-209ENST00000452724 IGHV2-5P01817 119 aa2.35□□□□□ -2.03
USP40-209ENST00000452724 IGKV1-13P0DP09 117 aa2.35□□□□□ -2.03
USP40-209ENST00000452724 HSD17B2P37059 387 aa2.35□□□□□ -2.03
USP40-209ENST00000452724 AQP6Q13520 282 aa2.35□□□□□ -2.03
USP40-209ENST00000452724 IMMTQ16891 758 aaKnown RBP2.35□□□□□ -2.03
USP40-209ENST00000452724 KCTD21Q4G0X4 260 aa2.35□□□□□ -2.03
USP40-209ENST00000452724 LRRC31Q6UY01 552 aa2.35□□□□□ -2.03
USP40-209ENST00000452724 H2BFWTQ7Z2G1 175 aa2.35□□□□□ -2.03
USP40-209ENST00000452724 CYB561D1Q8N8Q1 229 aa2.35□□□□□ -2.03
USP40-209ENST00000452724 BHLHE23Q8NDY6 225 aa2.35□□□□□ -2.03
USP40-209ENST00000452724 SLC22A8Q8TCC7 542 aa2.35□□□□□ -2.03
USP40-209ENST00000452724 GEMIN6Q8WXD5 167 aaKnown RBP2.35□□□□□ -2.03
USP40-209ENST00000452724 SGK3Q96BR1 496 aa2.35□□□□□ -2.03
USP40-209ENST00000452724 PLEKHA8Q96JA3 519 aa2.35□□□□□ -2.03
USP40-209ENST00000452724 HSFY1Q96LI6 401 aa2.35□□□□□ -2.03
USP40-209ENST00000452724 TCEANC2Q96MN5 208 aa2.35□□□□□ -2.03
USP40-209ENST00000452724 TSNARE1Q96NA8 513 aa2.35□□□□□ -2.03
USP40-209ENST00000452724 GABARAPL3Q9BY60 117 aa2.35□□□□□ -2.03
USP40-209ENST00000452724 MFFQ9GZY8 342 aa2.35□□□□□ -2.03
USP40-209ENST00000452724 UGT1A7Q9HAW7 530 aa2.35□□□□□ -2.03
USP40-209ENST00000452724 UGT1A10Q9HAW8 530 aa2.35□□□□□ -2.03
USP40-209ENST00000452724 UGT1A8Q9HAW9 530 aa2.35□□□□□ -2.03
USP40-209ENST00000452724 CDHR2Q9BYE9 1310 aa2.35□□□□□ -2.03
USP40-209ENST00000452724 MSH6P52701 1360 aa2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms