RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 TMEM186Q96B77 213 aa11.45□□□□□ -0.58
HMGB3-204ENST00000448905 SLC41A3Q96GZ6 507 aa11.45□□□□□ -0.58
HMGB3-204ENST00000448905 EMC6Q9BV81 110 aa11.45□□□□□ -0.58
HMGB3-204ENST00000448905 ZNF416Q9BWM5 594 aa11.45□□□□□ -0.58
HMGB3-204ENST00000448905 PARD6BQ9BYG5 372 aa11.45□□□□□ -0.58
HMGB3-204ENST00000448905 MRPL37Q9BZE1 423 aaKnown RBP11.45□□□□□ -0.58
HMGB3-204ENST00000448905 METTL17Q9H7H0 456 aaPredicted RBP11.45□□□□□ -0.58
HMGB3-204ENST00000448905 HIF1ANQ9NWT6 349 aa11.45□□□□□ -0.58
HMGB3-204ENST00000448905 MRPL39Q9NYK5 338 aaKnown RBP11.45□□□□□ -0.58
HMGB3-204ENST00000448905 KLHL14Q9P2G3 628 aa11.45□□□□□ -0.58
HMGB3-204ENST00000448905 CORO2BQ9UQ03 480 aa11.45□□□□□ -0.58
HMGB3-204ENST00000448905 TMEM120BA0PK00 339 aa11.44□□□□□ -0.58
HMGB3-204ENST00000448905 EVPLLA8MZ36 301 aa11.44□□□□□ -0.58
HMGB3-204ENST00000448905 PPIHO43447 177 aaKnown RBP11.44□□□□□ -0.58
HMGB3-204ENST00000448905 TRAF3IP2O43734 574 aaPredicted RBP11.44□□□□□ -0.58
HMGB3-204ENST00000448905 FZD7O75084 574 aa11.44□□□□□ -0.58
HMGB3-204ENST00000448905 SEC14L2O76054 403 aa11.44□□□□□ -0.58
HMGB3-204ENST00000448905 PTHP01270 115 aa11.44□□□□□ -0.58
HMGB3-204ENST00000448905 MSMBP08118 114 aa11.44□□□□□ -0.58
HMGB3-204ENST00000448905 ZNF14P17017 642 aaPredicted RBP11.44□□□□□ -0.58
HMGB3-204ENST00000448905 SLC6A2P23975 617 aa11.44□□□□□ -0.58
HMGB3-204ENST00000448905 COL8A2P25067 703 aa11.44□□□□□ -0.58
HMGB3-204ENST00000448905 GIPRP48546 466 aa11.44□□□□□ -0.58
HMGB3-204ENST00000448905 SLC18A1P54219 525 aa11.44□□□□□ -0.58
HMGB3-204ENST00000448905 AQP5P55064 265 aa11.44□□□□□ -0.58
HMGB3-204ENST00000448905 CDK6Q00534 326 aa11.44□□□□□ -0.58
HMGB3-204ENST00000448905 PUDPQ08623 228 aa11.44□□□□□ -0.58
HMGB3-204ENST00000448905 MMEL1Q495T6 779 aa11.44□□□□□ -0.58
HMGB3-204ENST00000448905 GCNT6Q5T4J0 391 aa11.44□□□□□ -0.58
HMGB3-204ENST00000448905 FAHD2BQ6P2I3 314 aaPredicted RBP11.44□□□□□ -0.58
HMGB3-204ENST00000448905 SLC2A7Q6PXP3 512 aa11.44□□□□□ -0.58
HMGB3-204ENST00000448905 DEF8Q6ZN54 512 aa11.44□□□□□ -0.58
HMGB3-204ENST00000448905 MYPOPQ86VE0 399 aaPredicted RBP11.44□□□□□ -0.58
HMGB3-204ENST00000448905 RANBP3LQ86VV4 465 aaPredicted RBP11.44□□□□□ -0.58
HMGB3-204ENST00000448905 MEX3DQ86XN8 651 aaKnown RBP11.44□□□□□ -0.58
HMGB3-204ENST00000448905 OR51F2Q8NH61 342 aa11.44□□□□□ -0.58
HMGB3-204ENST00000448905 NFKBIDQ8NI38 313 aa11.44□□□□□ -0.58
HMGB3-204ENST00000448905 FAHD2AQ96GK7 314 aa11.44□□□□□ -0.58
HMGB3-204ENST00000448905 MS4A3Q96HJ5 214 aa11.44□□□□□ -0.58
HMGB3-204ENST00000448905 TXNDC15Q96J42 360 aa11.44□□□□□ -0.58
HMGB3-204ENST00000448905 FOXB1Q99853 325 aa11.44□□□□□ -0.58
HMGB3-204ENST00000448905 SYT3Q9BQG1 590 aa11.44□□□□□ -0.58
HMGB3-204ENST00000448905 PAIP1Q9H074 479 aaKnown RBP11.44□□□□□ -0.58
HMGB3-204ENST00000448905 ZNF385DQ9H6B1 395 aa11.44□□□□□ -0.58
HMGB3-204ENST00000448905 TESQ9UGI8 421 aaKnown RBP11.44□□□□□ -0.58
HMGB3-204ENST00000448905 A0A1W2PPW3 197 aa11.43□□□□□ -0.58
HMGB3-204ENST00000448905 ZNF503-AS2A6NEH8 195 aa11.43□□□□□ -0.58
HMGB3-204ENST00000448905 PLPP3O14495 311 aa11.43□□□□□ -0.58
HMGB3-204ENST00000448905 FARS2O95363 451 aaKnown RBP11.43□□□□□ -0.58
HMGB3-204ENST00000448905 MT-ATP6P00846 226 aa11.43□□□□□ -0.58
HMGB3-204ENST00000448905 MT-ND5P03915 603 aa11.43□□□□□ -0.58
HMGB3-204ENST00000448905 HIST1H2ABP04908 130 aa11.43□□□□□ -0.58
HMGB3-204ENST00000448905 SERPINA5P05154 406 aa11.43□□□□□ -0.58
HMGB3-204ENST00000448905 OR8G3PP0DMU2 310 aa11.43□□□□□ -0.58
HMGB3-204ENST00000448905 SAGP10523 405 aaPredicted RBP11.43□□□□□ -0.58
HMGB3-204ENST00000448905 HLA-DOBP13765 273 aa11.43□□□□□ -0.58
HMGB3-204ENST00000448905 B4GALT1P15291 398 aa11.43□□□□□ -0.58
HMGB3-204ENST00000448905 ALDH3B1P43353 468 aa11.43□□□□□ -0.58
HMGB3-204ENST00000448905 CSNK1A1P48729 337 aa11.43□□□□□ -0.58
HMGB3-204ENST00000448905 WDR4P57081 412 aaKnown RBP11.43□□□□□ -0.58
HMGB3-204ENST00000448905 RGS8P57771 180 aaPredicted RBP11.43□□□□□ -0.58
HMGB3-204ENST00000448905 MYBPC1Q00872 1141 aa11.43□□□□□ -0.58
HMGB3-204ENST00000448905 TEKQ02763 1124 aa11.43□□□□□ -0.58
HMGB3-204ENST00000448905 OR1Q1Q15612 314 aa11.43□□□□□ -0.58
HMGB3-204ENST00000448905 NKPD1Q17RQ9 610 aa11.43□□□□□ -0.58
HMGB3-204ENST00000448905 ELFN2Q5R3F8 820 aa11.43□□□□□ -0.58
HMGB3-204ENST00000448905 PHYHD1Q5SRE7 291 aa11.43□□□□□ -0.58
HMGB3-204ENST00000448905 SWT1Q5T5J6 900 aaKnown RBP11.43□□□□□ -0.58
HMGB3-204ENST00000448905 TMEM154Q6P9G4 183 aa11.43□□□□□ -0.58
HMGB3-204ENST00000448905 HIST3H2AQ7L7L0 130 aa11.43□□□□□ -0.58
HMGB3-204ENST00000448905 DPPA2Q7Z7J5 298 aa11.43□□□□□ -0.58
HMGB3-204ENST00000448905 CLDND2Q8NHS1 167 aa11.43□□□□□ -0.58
HMGB3-204ENST00000448905 HIST1H2ACQ93077 130 aa11.43□□□□□ -0.58
HMGB3-204ENST00000448905 JMJD8Q96S16 334 aa11.43□□□□□ -0.58
HMGB3-204ENST00000448905 TMEM43Q9BTV4 400 aa11.43□□□□□ -0.58
HMGB3-204ENST00000448905 LRMDAQ9H2I8 198 aa11.43□□□□□ -0.58
HMGB3-204ENST00000448905 MED29Q9NX70 200 aa11.43□□□□□ -0.58
HMGB3-204ENST00000448905 SLC7A8Q9UHI5 535 aa11.43□□□□□ -0.58
HMGB3-204ENST00000448905 MALRD1Q5VYJ5 2156 aa11.43□□□□□ -0.58
HMGB3-204ENST00000448905 NBEAL1Q6ZS30 2694 aa11.43□□□□□ -0.58
HMGB3-204ENST00000448905 NUP214P35658 2090 aaPredicted RBP11.42□□□□□ -0.58
HMGB3-204ENST00000448905 IGKV1D-42A0A075B6H8 117 aa11.42□□□□□ -0.58
HMGB3-204ENST00000448905 TRAV20A0A0B4J274 112 aa11.42□□□□□ -0.58
HMGB3-204ENST00000448905 TGDSO95455 350 aa11.42□□□□□ -0.58
HMGB3-204ENST00000448905 HPXP02790 462 aa11.42□□□□□ -0.58
HMGB3-204ENST00000448905 IGFBP1P08833 259 aaPredicted RBP11.42□□□□□ -0.58
HMGB3-204ENST00000448905 ADORA3P0DMS8 318 aa11.42□□□□□ -0.58
HMGB3-204ENST00000448905 HTR2AP28223 471 aa11.42□□□□□ -0.58
HMGB3-204ENST00000448905 RAD52P43351 418 aa11.42□□□□□ -0.58
HMGB3-204ENST00000448905 SEC24CP53992 1094 aa11.42□□□□□ -0.58
HMGB3-204ENST00000448905 RAB39AQ14964 217 aa11.42□□□□□ -0.58
HMGB3-204ENST00000448905 FXNQ16595 210 aa11.42□□□□□ -0.58
HMGB3-204ENST00000448905 PCGF3Q3KNV8 242 aa11.42□□□□□ -0.58
HMGB3-204ENST00000448905 ACSM5Q6NUN0 579 aa11.42□□□□□ -0.58
HMGB3-204ENST00000448905 TREML1Q86YW5 311 aa11.42□□□□□ -0.58
HMGB3-204ENST00000448905 ARMC8Q8IUR7 673 aa11.42□□□□□ -0.58
HMGB3-204ENST00000448905 C3orf56Q8N813 242 aa11.42□□□□□ -0.58
HMGB3-204ENST00000448905 OR9I1Q8NGQ6 314 aa11.42□□□□□ -0.58
HMGB3-204ENST00000448905 OR1J2Q8NGS2 313 aa11.42□□□□□ -0.58
HMGB3-204ENST00000448905 OR5J2Q8NH18 312 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms