RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 ZNF726A6NNF4 738 aa15.31■□□□□ 0.04
CCDC28B-202ENST00000421922 DBTP11182 482 aaKnown RBP15.31■□□□□ 0.04
CCDC28B-202ENST00000421922 HLA-DOBP13765 273 aa15.31■□□□□ 0.04
CCDC28B-202ENST00000421922 MTNR1AP48039 350 aa15.31■□□□□ 0.04
CCDC28B-202ENST00000421922 CDH15P55291 814 aa15.31■□□□□ 0.04
CCDC28B-202ENST00000421922 APOFQ13790 326 aa15.31■□□□□ 0.04
CCDC28B-202ENST00000421922 PLEKHN1Q494U1 663 aaPredicted RBP15.31■□□□□ 0.04
CCDC28B-202ENST00000421922 KLHL22Q53GT1 634 aa15.31■□□□□ 0.04
CCDC28B-202ENST00000421922 MESTQ5EB52 335 aa15.31■□□□□ 0.04
CCDC28B-202ENST00000421922 ARMC4Q5T2S8 1044 aa15.31■□□□□ 0.04
CCDC28B-202ENST00000421922 MEPCEQ7L2J0 689 aaKnown RBP15.31■□□□□ 0.04
CCDC28B-202ENST00000421922 ASB10Q8WXI3 467 aa15.31■□□□□ 0.04
CCDC28B-202ENST00000421922 SARAFQ96BY9 339 aa15.31■□□□□ 0.04
CCDC28B-202ENST00000421922 RNFT2Q96EX2 444 aa15.31■□□□□ 0.04
CCDC28B-202ENST00000421922 UCN2Q96RP3 112 aa15.31■□□□□ 0.04
CCDC28B-202ENST00000421922 RPRD1BQ9NQG5 326 aaKnown RBP15.31■□□□□ 0.04
CCDC28B-202ENST00000421922 LUZP4Q9P127 313 aa15.31■□□□□ 0.04
CCDC28B-202ENST00000421922 PSORS1C1Q9UIG5 152 aa15.31■□□□□ 0.04
CCDC28B-202ENST00000421922 GCN1Q92616 2671 aaKnown RBP15.3■□□□□ 0.04
CCDC28B-202ENST00000421922 H7C1C5 153 aa15.3■□□□□ 0.04
CCDC28B-202ENST00000421922 SMAD9O15198 467 aaKnown RBP15.3■□□□□ 0.04
CCDC28B-202ENST00000421922 HTR1FP30939 366 aa15.3■□□□□ 0.04
CCDC28B-202ENST00000421922 P2RY4P51582 365 aa15.3■□□□□ 0.04
CCDC28B-202ENST00000421922 BIDP55957 195 aa15.3■□□□□ 0.04
CCDC28B-202ENST00000421922 LCN6P62502 163 aa15.3■□□□□ 0.04
CCDC28B-202ENST00000421922 H3F3AP84243 136 aa15.3■□□□□ 0.04
CCDC28B-202ENST00000421922 TMED1Q13445 227 aa15.3■□□□□ 0.04
CCDC28B-202ENST00000421922 AADACL4Q5VUY2 407 aa15.3■□□□□ 0.04
CCDC28B-202ENST00000421922 DNM1P34Q6PK57 102 aa15.3■□□□□ 0.04
CCDC28B-202ENST00000421922 ZNF773Q6PK81 442 aa15.3■□□□□ 0.04
CCDC28B-202ENST00000421922 FCRLAQ7L513 359 aa15.3■□□□□ 0.04
CCDC28B-202ENST00000421922 PM20D2Q8IYS1 436 aa15.3■□□□□ 0.04
CCDC28B-202ENST00000421922 SVOPQ8N4V2 548 aa15.3■□□□□ 0.04
CCDC28B-202ENST00000421922 NPEPL1Q8NDH3 523 aa15.3■□□□□ 0.04
CCDC28B-202ENST00000421922 BBS1Q8NFJ9 593 aa15.3■□□□□ 0.04
CCDC28B-202ENST00000421922 OR9K2Q8NGE7 335 aa15.3■□□□□ 0.04
CCDC28B-202ENST00000421922 OR9Q1Q8NGQ5 310 aa15.3■□□□□ 0.04
CCDC28B-202ENST00000421922 OR2T4Q8NH00 348 aa15.3■□□□□ 0.04
CCDC28B-202ENST00000421922 ZNF519Q8TB69 540 aa15.3■□□□□ 0.04
CCDC28B-202ENST00000421922 GGHQ92820 318 aa15.3■□□□□ 0.04
CCDC28B-202ENST00000421922 SNX18Q96RF0 628 aa15.3■□□□□ 0.04
CCDC28B-202ENST00000421922 SF3B5Q9BWJ5 86 aaKnown RBP15.3■□□□□ 0.04
CCDC28B-202ENST00000421922 RERGLQ9H628 205 aa15.3■□□□□ 0.04
CCDC28B-202ENST00000421922 MED29Q9NX70 200 aa15.3■□□□□ 0.04
CCDC28B-202ENST00000421922 SPRR3Q9UBC9 169 aa15.3■□□□□ 0.04
CCDC28B-202ENST00000421922 WARS2Q9UGM6 360 aaKnown RBP15.3■□□□□ 0.04
CCDC28B-202ENST00000421922 SETXQ7Z333 2677 aaKnown RBP15.29■□□□□ 0.04
CCDC28B-202ENST00000421922 LOC102725191A0A1B0GVB3 256 aa15.29■□□□□ 0.04
CCDC28B-202ENST00000421922 ZNF814B7Z6K7 855 aa15.29■□□□□ 0.04
CCDC28B-202ENST00000421922 AQP7O14520 342 aa15.29■□□□□ 0.04
CCDC28B-202ENST00000421922 MRPS14O60783 128 aaKnown RBP15.29■□□□□ 0.04
CCDC28B-202ENST00000421922 CLPTM1O96005 669 aa15.29■□□□□ 0.04
CCDC28B-202ENST00000421922 IGHG1P01857 330 aa15.29■□□□□ 0.04
CCDC28B-202ENST00000421922 PIPP12273 146 aaPredicted RBP15.29■□□□□ 0.04
CCDC28B-202ENST00000421922 NR2C1P13056 603 aa15.29■□□□□ 0.04
CCDC28B-202ENST00000421922 CDKN2AP42771 156 aaKnown RBP15.29■□□□□ 0.04
CCDC28B-202ENST00000421922 SLC25A1P53007 311 aa15.29■□□□□ 0.04
CCDC28B-202ENST00000421922 CLRN1P58418 232 aa15.29■□□□□ 0.04
CCDC28B-202ENST00000421922 SLC35A2P78381 396 aa15.29■□□□□ 0.04
CCDC28B-202ENST00000421922 PON3Q15166 354 aa15.29■□□□□ 0.04
CCDC28B-202ENST00000421922 POU4F3Q15319 338 aa15.29■□□□□ 0.04
CCDC28B-202ENST00000421922 MCEMP1Q8IX19 187 aa15.29■□□□□ 0.04
CCDC28B-202ENST00000421922 TEX19Q8NA77 164 aa15.29■□□□□ 0.04
CCDC28B-202ENST00000421922 PROKR2Q8NFJ6 384 aa15.29■□□□□ 0.04
CCDC28B-202ENST00000421922 OR6K6Q8NGW6 343 aa15.29■□□□□ 0.04
CCDC28B-202ENST00000421922 ROBO4Q8WZ75 1007 aa15.29■□□□□ 0.04
CCDC28B-202ENST00000421922 ZNF845Q96IR2 970 aaPredicted RBP15.29■□□□□ 0.04
CCDC28B-202ENST00000421922 ADAD1Q96M93 576 aaKnown RBP15.29■□□□□ 0.04
CCDC28B-202ENST00000421922 TAAR6Q96RI8 345 aa15.29■□□□□ 0.04
CCDC28B-202ENST00000421922 TIMP4Q99727 224 aa15.29■□□□□ 0.04
CCDC28B-202ENST00000421922 B3GAT1Q9P2W7 334 aa15.29■□□□□ 0.04
CCDC28B-202ENST00000421922 LAMA5O15230 3695 aa15.29■□□□□ 0.04
CCDC28B-202ENST00000421922 PRSS37A4D1T9 235 aa15.28■□□□□ 0.04
CCDC28B-202ENST00000421922 TRAF3IP2O43734 574 aaPredicted RBP15.28■□□□□ 0.04
CCDC28B-202ENST00000421922 RAB36O95755 333 aa15.28■□□□□ 0.04
CCDC28B-202ENST00000421922 FADS2O95864 444 aaKnown RBP15.28■□□□□ 0.04
CCDC28B-202ENST00000421922 GYPBP06028 91 aa15.28■□□□□ 0.04
CCDC28B-202ENST00000421922 CPN1P15169 458 aa15.28■□□□□ 0.04
CCDC28B-202ENST00000421922 SPI1P17947 270 aa15.28■□□□□ 0.04
CCDC28B-202ENST00000421922 KLK2P20151 261 aa15.28■□□□□ 0.04
CCDC28B-202ENST00000421922 CLDN17P56750 224 aa15.28■□□□□ 0.04
CCDC28B-202ENST00000421922 TUBA4AP68366 448 aa15.28■□□□□ 0.04
CCDC28B-202ENST00000421922 ST3GAL4Q11206 333 aa15.28■□□□□ 0.04
CCDC28B-202ENST00000421922 RAB40BQ12829 278 aa15.28■□□□□ 0.04
CCDC28B-202ENST00000421922 POU4F2Q12837 409 aa15.28■□□□□ 0.04
CCDC28B-202ENST00000421922 C3AR1Q16581 482 aa15.28■□□□□ 0.04
CCDC28B-202ENST00000421922 NADK2Q4G0N4 442 aa15.28■□□□□ 0.04
CCDC28B-202ENST00000421922 SOWAHCQ53LP3 525 aaPredicted RBP15.28■□□□□ 0.04
CCDC28B-202ENST00000421922 SLC35D3Q5M8T2 416 aa15.28■□□□□ 0.04
CCDC28B-202ENST00000421922 GTF2IRD2BQ6EKJ0 949 aa15.28■□□□□ 0.04
CCDC28B-202ENST00000421922 GTF2IRD2Q86UP8 949 aa15.28■□□□□ 0.04
CCDC28B-202ENST00000421922 SYT4Q9H2B2 425 aa15.28■□□□□ 0.04
CCDC28B-202ENST00000421922 DUSP21Q9H596 190 aa15.28■□□□□ 0.04
CCDC28B-202ENST00000421922 CHCHD3Q9NX63 227 aaKnown RBP15.28■□□□□ 0.04
CCDC28B-202ENST00000421922 ERVK-18Q9QC07 812 aa15.28■□□□□ 0.04
CCDC28B-202ENST00000421922 TNFRSF10DQ9UBN6 386 aa15.28■□□□□ 0.04
CCDC28B-202ENST00000421922 LOC400499M0QZD8 3231 aa15.28■□□□□ 0.04
CCDC28B-202ENST00000421922 IGSF10Q6WRI0 2623 aa15.28■□□□□ 0.04
CCDC28B-202ENST00000421922 A0A1B0GVC2 190 aa15.27■□□□□ 0.04
CCDC28B-202ENST00000421922 OR6C68A6NDL8 312 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms