RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 SLC25A25Q6KCM7 469 aa12.6□□□□□ -0.39
GPNMB-203ENST00000409458 GALNTL5Q7Z4T8 443 aa12.6□□□□□ -0.39
GPNMB-203ENST00000409458 KLHL36Q8N4N3 616 aa12.6□□□□□ -0.39
GPNMB-203ENST00000409458 ACBD7Q8N6N7 88 aa12.6□□□□□ -0.39
GPNMB-203ENST00000409458 ZNF248Q8NDW4 579 aa12.6□□□□□ -0.39
GPNMB-203ENST00000409458 GATAD2BQ8WXI9 593 aa12.6□□□□□ -0.39
GPNMB-203ENST00000409458 TM9SF4Q92544 642 aa12.6□□□□□ -0.39
GPNMB-203ENST00000409458 CNN2Q99439 309 aaKnown RBP12.6□□□□□ -0.39
GPNMB-203ENST00000409458 ALG12Q9BV10 488 aa12.6□□□□□ -0.39
GPNMB-203ENST00000409458 TTTY12Q9BZ98 90 aa12.6□□□□□ -0.39
GPNMB-203ENST00000409458 RNF32Q9H0A6 362 aa12.6□□□□□ -0.39
GPNMB-203ENST00000409458 RACGAP1Q9H0H5 632 aa12.6□□□□□ -0.39
GPNMB-203ENST00000409458 TRAPPC4Q9Y296 219 aa12.6□□□□□ -0.39
GPNMB-203ENST00000409458 MRPS18CQ9Y3D5 142 aaKnown RBP12.6□□□□□ -0.39
GPNMB-203ENST00000409458 DCHS1Q96JQ0 3298 aa12.6□□□□□ -0.39
GPNMB-203ENST00000409458 PRSS37A4D1T9 235 aa12.59□□□□□ -0.39
GPNMB-203ENST00000409458 TRIM64BA6NI03 449 aa12.59□□□□□ -0.39
GPNMB-203ENST00000409458 NPIPB13A6NJU9 1138 aa12.59□□□□□ -0.39
GPNMB-203ENST00000409458 AQP7P3A6NL99 342 aa12.59□□□□□ -0.39
GPNMB-203ENST00000409458 NPIPB4C9JG80 1138 aa12.59□□□□□ -0.39
GPNMB-203ENST00000409458 NPIPA5E9PKD4 350 aa12.59□□□□□ -0.39
GPNMB-203ENST00000409458 TNFSF11O14788 317 aa12.59□□□□□ -0.39
GPNMB-203ENST00000409458 EFSO43281 561 aa12.59□□□□□ -0.39
GPNMB-203ENST00000409458 TLX3O43711 291 aaPredicted RBP12.59□□□□□ -0.39
GPNMB-203ENST00000409458 RAMP1O60894 148 aa12.59□□□□□ -0.39
GPNMB-203ENST00000409458 GADD45AP24522 165 aa12.59□□□□□ -0.39
GPNMB-203ENST00000409458 DAP3P51398 398 aaKnown RBP12.59□□□□□ -0.39
GPNMB-203ENST00000409458 SLC35A1P78382 337 aa12.59□□□□□ -0.39
GPNMB-203ENST00000409458 ZNF85Q03923 595 aa12.59□□□□□ -0.39
GPNMB-203ENST00000409458 MLLT11Q13015 90 aaPredicted RBP12.59□□□□□ -0.39
GPNMB-203ENST00000409458 ZNF239Q16600 458 aaKnown RBP12.59□□□□□ -0.39
GPNMB-203ENST00000409458 SLC35D2Q76EJ3 337 aa12.59□□□□□ -0.39
GPNMB-203ENST00000409458 PXKQ7Z7A4 578 aa12.59□□□□□ -0.39
GPNMB-203ENST00000409458 OR6V1Q8N148 313 aa12.59□□□□□ -0.39
GPNMB-203ENST00000409458 RFLNBQ8N5W9 214 aa12.59□□□□□ -0.39
GPNMB-203ENST00000409458 POMGNT2Q8NAT1 580 aa12.59□□□□□ -0.39
GPNMB-203ENST00000409458 SPRYD4Q8WW59 207 aaPredicted RBP12.59□□□□□ -0.39
GPNMB-203ENST00000409458 KCNE4Q8WWG9 221 aa12.59□□□□□ -0.39
GPNMB-203ENST00000409458 RPL3LQ92901 407 aaKnown RBP12.59□□□□□ -0.39
GPNMB-203ENST00000409458 KLHL15Q96M94 604 aa12.59□□□□□ -0.39
GPNMB-203ENST00000409458 SFXN2Q96NB2 322 aa12.59□□□□□ -0.39
GPNMB-203ENST00000409458 SNX18Q96RF0 628 aa12.59□□□□□ -0.39
GPNMB-203ENST00000409458 TIMP4Q99727 224 aa12.59□□□□□ -0.39
GPNMB-203ENST00000409458 ALG8Q9BVK2 526 aa12.59□□□□□ -0.39
GPNMB-203ENST00000409458 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.59□□□□□ -0.39
GPNMB-203ENST00000409458 SRA1Q9HD15 236 aaKnown RBP12.59□□□□□ -0.39
GPNMB-203ENST00000409458 INPP5EQ9NRR6 644 aa12.59□□□□□ -0.39
GPNMB-203ENST00000409458 MED29Q9NX70 200 aa12.59□□□□□ -0.39
GPNMB-203ENST00000409458 VSX1Q9NZR4 365 aaPredicted RBP12.59□□□□□ -0.39
GPNMB-203ENST00000409458 NPIPA1Q9UND3 350 aa12.59□□□□□ -0.39
GPNMB-203ENST00000409458 KLF13Q9Y2Y9 288 aaPredicted RBP12.59□□□□□ -0.39
GPNMB-203ENST00000409458 AKAP13Q12802 2813 aa12.58□□□□□ -0.39
GPNMB-203ENST00000409458 A0A0J9YW62 118 aa12.58□□□□□ -0.4
GPNMB-203ENST00000409458 A0A1W2PPW3 197 aa12.58□□□□□ -0.4
GPNMB-203ENST00000409458 A0A1W2PQL4 384 aaPredicted RBP12.58□□□□□ -0.4
GPNMB-203ENST00000409458 DAPL1A0PJW8 107 aa12.58□□□□□ -0.4
GPNMB-203ENST00000409458 FAM166BA8MTA8 275 aa12.58□□□□□ -0.4
GPNMB-203ENST00000409458 H0YC42 278 aa12.58□□□□□ -0.4
GPNMB-203ENST00000409458 CCRL2O00421 344 aa12.58□□□□□ -0.4
GPNMB-203ENST00000409458 CELA3AP09093 270 aa12.58□□□□□ -0.4
GPNMB-203ENST00000409458 MEOX1P50221 254 aa12.58□□□□□ -0.4
GPNMB-203ENST00000409458 HCCSP53701 268 aa12.58□□□□□ -0.4
GPNMB-203ENST00000409458 LSM3P62310 102 aaKnown RBP12.58□□□□□ -0.4
GPNMB-203ENST00000409458 SPCS2Q15005 226 aa12.58□□□□□ -0.4
GPNMB-203ENST00000409458 EEF1A1P5Q5VTE0 462 aa12.58□□□□□ -0.4
GPNMB-203ENST00000409458 ZNF322Q6U7Q0 402 aaPredicted RBP12.58□□□□□ -0.4
GPNMB-203ENST00000409458 NHLRC1Q6VVB1 395 aa12.58□□□□□ -0.4
GPNMB-203ENST00000409458 SSX6Q7RTT6 188 aa12.58□□□□□ -0.4
GPNMB-203ENST00000409458 ATCAYQ86WG3 371 aa12.58□□□□□ -0.4
GPNMB-203ENST00000409458 SLC35F2Q8IXU6 374 aa12.58□□□□□ -0.4
GPNMB-203ENST00000409458 OR2T4Q8NH00 348 aa12.58□□□□□ -0.4
GPNMB-203ENST00000409458 OR52N1Q8NH53 320 aa12.58□□□□□ -0.4
GPNMB-203ENST00000409458 HAS2Q92819 552 aa12.58□□□□□ -0.4
GPNMB-203ENST00000409458 SCMH1Q96GD3 660 aa12.58□□□□□ -0.4
GPNMB-203ENST00000409458 TXNDC15Q96J42 360 aa12.58□□□□□ -0.4
GPNMB-203ENST00000409458 ARHGAP9Q9BRR9 750 aa12.58□□□□□ -0.4
GPNMB-203ENST00000409458 DCUN1D5Q9BTE7 237 aa12.58□□□□□ -0.4
GPNMB-203ENST00000409458 SCNM1Q9BWG6 230 aa12.58□□□□□ -0.4
GPNMB-203ENST00000409458 SRXN1Q9BYN0 137 aa12.58□□□□□ -0.4
GPNMB-203ENST00000409458 NUAK2Q9H093 628 aa12.58□□□□□ -0.4
GPNMB-203ENST00000409458 ISG20L2Q9H9L3 353 aaKnown RBP12.58□□□□□ -0.4
GPNMB-203ENST00000409458 B4GALT7Q9UBV7 327 aa12.58□□□□□ -0.4
GPNMB-203ENST00000409458 CSAG2Q9Y5P2 127 aa12.58□□□□□ -0.4
GPNMB-203ENST00000409458 SLC22A23A1A5C7 686 aa12.57□□□□□ -0.4
GPNMB-203ENST00000409458 A6NIZ1 184 aa12.57□□□□□ -0.4
GPNMB-203ENST00000409458 GJE1A6NN92 205 aa12.57□□□□□ -0.4
GPNMB-203ENST00000409458 KLK10O43240 276 aa12.57□□□□□ -0.4
GPNMB-203ENST00000409458 TRAF3IP2O43734 574 aaPredicted RBP12.57□□□□□ -0.4
GPNMB-203ENST00000409458 GLSO94925 669 aaPredicted RBP12.57□□□□□ -0.4
GPNMB-203ENST00000409458 BCL10O95999 233 aa12.57□□□□□ -0.4
GPNMB-203ENST00000409458 LALBAP00709 142 aa12.57□□□□□ -0.4
GPNMB-203ENST00000409458 HPNP05981 417 aa12.57□□□□□ -0.4
GPNMB-203ENST00000409458 CD46P15529 392 aa12.57□□□□□ -0.4
GPNMB-203ENST00000409458 MAGEA5P43359 124 aa12.57□□□□□ -0.4
GPNMB-203ENST00000409458 GFRA1P56159 465 aa12.57□□□□□ -0.4
GPNMB-203ENST00000409458 CLDN20P56880 219 aa12.57□□□□□ -0.4
GPNMB-203ENST00000409458 RAP1BP61224 184 aa12.57□□□□□ -0.4
GPNMB-203ENST00000409458 RAP1AP62834 184 aa12.57□□□□□ -0.4
GPNMB-203ENST00000409458 ACTC1P68032 377 aa12.57□□□□□ -0.4
GPNMB-203ENST00000409458 ACTA1P68133 377 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms