RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 ATG16L2Q8NAA4 619 aa19.56■□□□□ 0.72
SHMT1-203ENST00000354098 OR6X1Q8NH79 312 aa19.56■□□□□ 0.72
SHMT1-203ENST00000354098 ASB10Q8WXI3 467 aa19.56■□□□□ 0.72
SHMT1-203ENST00000354098 TSPAN32Q96QS1 320 aa19.56■□□□□ 0.72
SHMT1-203ENST00000354098 POLDIP3Q9BY77 421 aaKnown RBP19.56■□□□□ 0.72
SHMT1-203ENST00000354098 PLA2G12AQ9BZM1 189 aa19.56■□□□□ 0.72
SHMT1-203ENST00000354098 AKAP8O43823 692 aaKnown RBP19.56■□□□□ 0.72
SHMT1-203ENST00000354098 SLC43A1O75387 559 aa19.56■□□□□ 0.72
SHMT1-203ENST00000354098 SOX14O95416 240 aa19.56■□□□□ 0.72
SHMT1-203ENST00000354098 BAG2O95816 211 aa19.56■□□□□ 0.72
SHMT1-203ENST00000354098 CD14P08571 375 aa19.56■□□□□ 0.72
SHMT1-203ENST00000354098 DAPP51397 102 aa19.56■□□□□ 0.72
SHMT1-203ENST00000354098 FAPQ12884 760 aa19.56■□□□□ 0.72
SHMT1-203ENST00000354098 SNTB1Q13884 538 aaKnown RBP19.56■□□□□ 0.72
SHMT1-203ENST00000354098 CD300LDQ6UXZ3 194 aa19.56■□□□□ 0.72
SHMT1-203ENST00000354098 LINGO2Q7L985 606 aa19.56■□□□□ 0.72
SHMT1-203ENST00000354098 RNASE6Q93091 150 aaKnown RBP19.56■□□□□ 0.72
SHMT1-203ENST00000354098 SMURF2Q9HAU4 748 aa19.56■□□□□ 0.72
SHMT1-203ENST00000354098 NRIP3Q9NQ35 241 aa19.56■□□□□ 0.72
SHMT1-203ENST00000354098 REV1Q9UBZ9 1251 aa19.56■□□□□ 0.72
SHMT1-203ENST00000354098 UTP20O75691 2785 aaKnown RBP19.55■□□□□ 0.72
SHMT1-203ENST00000354098 PDLIM1O00151 329 aa19.55■□□□□ 0.72
SHMT1-203ENST00000354098 IGHMP01871 453 aa19.55■□□□□ 0.72
SHMT1-203ENST00000354098 ANXA8P13928 327 aa19.55■□□□□ 0.72
SHMT1-203ENST00000354098 GSTM3P21266 225 aa19.55■□□□□ 0.72
SHMT1-203ENST00000354098 DAP3P51398 398 aaKnown RBP19.55■□□□□ 0.72
SHMT1-203ENST00000354098 RPL27P61353 136 aaKnown RBP19.55■□□□□ 0.72
SHMT1-203ENST00000354098 TSC22D1Q15714 1073 aa19.55■□□□□ 0.72
SHMT1-203ENST00000354098 FAHD1Q6P587 224 aa19.55■□□□□ 0.72
SHMT1-203ENST00000354098 FAM122BQ7Z309 247 aa19.55■□□□□ 0.72
SHMT1-203ENST00000354098 CXorf67Q86X51 503 aaPredicted RBP19.55■□□□□ 0.72
SHMT1-203ENST00000354098 PQLC1Q8N2U9 271 aa19.55■□□□□ 0.72
SHMT1-203ENST00000354098 SVOPLQ8N434 492 aa19.55■□□□□ 0.72
SHMT1-203ENST00000354098 OR8D4Q8NGM9 314 aa19.55■□□□□ 0.72
SHMT1-203ENST00000354098 Q96M85 177 aa19.55■□□□□ 0.72
SHMT1-203ENST00000354098 ADAD1Q96M93 576 aaKnown RBP19.55■□□□□ 0.72
SHMT1-203ENST00000354098 GPX7Q96SL4 187 aaPredicted RBP19.55■□□□□ 0.72
SHMT1-203ENST00000354098 IL20Q9NYY1 176 aa19.55■□□□□ 0.72
SHMT1-203ENST00000354098 UPB1Q9UBR1 384 aa19.55■□□□□ 0.72
SHMT1-203ENST00000354098 MALT1Q9UDY8 824 aa19.55■□□□□ 0.72
SHMT1-203ENST00000354098 CDH10Q9Y6N8 788 aa19.55■□□□□ 0.72
SHMT1-203ENST00000354098 CACNA1CQ13936 2221 aa19.55■□□□□ 0.72
SHMT1-203ENST00000354098 ALPK2Q86TB3 2170 aa19.54■□□□□ 0.72
SHMT1-203ENST00000354098 NPIPB13A6NJU9 1138 aa19.54■□□□□ 0.72
SHMT1-203ENST00000354098 NPIPB4C9JG80 1138 aa19.54■□□□□ 0.72
SHMT1-203ENST00000354098 PPP1R3DO95685 299 aa19.54■□□□□ 0.72
SHMT1-203ENST00000354098 CD79BP40259 229 aa19.54■□□□□ 0.72
SHMT1-203ENST00000354098 COX10Q12887 443 aa19.54■□□□□ 0.72
SHMT1-203ENST00000354098 TAF11Q15544 211 aa19.54■□□□□ 0.72
SHMT1-203ENST00000354098 CLEC12AQ5QGZ9 265 aa19.54■□□□□ 0.72
SHMT1-203ENST00000354098 C9orf135Q5VTT2 229 aa19.54■□□□□ 0.72
SHMT1-203ENST00000354098 DPY19L2P2Q6ZN68 376 aa19.54■□□□□ 0.72
SHMT1-203ENST00000354098 C20orf196Q8IYI0 205 aa19.54■□□□□ 0.72
SHMT1-203ENST00000354098 POMGNT2Q8NAT1 580 aa19.54■□□□□ 0.72
SHMT1-203ENST00000354098 SLC25A44Q96H78 314 aaPredicted RBP19.54■□□□□ 0.72
SHMT1-203ENST00000354098 PSMG3-AS1Q96PY0 264 aa19.54■□□□□ 0.72
SHMT1-203ENST00000354098 ALKBH3Q96Q83 286 aaPredicted RBP19.54■□□□□ 0.72
SHMT1-203ENST00000354098 ZNF556Q9HAH1 456 aa19.54■□□□□ 0.72
SHMT1-203ENST00000354098 ASB6Q9NWX5 421 aa19.54■□□□□ 0.72
SHMT1-203ENST00000354098 ELOVL5Q9NYP7 299 aa19.54■□□□□ 0.72
SHMT1-203ENST00000354098 FOXD3Q9UJU5 478 aaPredicted RBP19.54■□□□□ 0.72
SHMT1-203ENST00000354098 IER3IP1Q9Y5U9 82 aa19.54■□□□□ 0.72
SHMT1-203ENST00000354098 KLF2Q9Y5W3 355 aaPredicted RBP19.54■□□□□ 0.72
SHMT1-203ENST00000354098 PRSS44E7EML9 344 aa19.53■□□□□ 0.72
SHMT1-203ENST00000354098 M0R3G1 203 aa19.53■□□□□ 0.72
SHMT1-203ENST00000354098 KRT33AO76009 404 aa19.53■□□□□ 0.72
SHMT1-203ENST00000354098 CNOT4O95628 575 aaKnown RBP19.53■□□□□ 0.72
SHMT1-203ENST00000354098 PGA4P0DJD7 388 aa19.53■□□□□ 0.72
SHMT1-203ENST00000354098 PGA3P0DJD8 388 aa19.53■□□□□ 0.72
SHMT1-203ENST00000354098 IGHV1-2P23083 117 aa19.53■□□□□ 0.72
SHMT1-203ENST00000354098 ACVR1BP36896 505 aa19.53■□□□□ 0.72
SHMT1-203ENST00000354098 RCN1Q15293 331 aa19.53■□□□□ 0.72
SHMT1-203ENST00000354098 STAC2Q6ZMT1 411 aa19.53■□□□□ 0.72
SHMT1-203ENST00000354098 CLDN22Q8N7P3 220 aa19.53■□□□□ 0.72
SHMT1-203ENST00000354098 SYT14Q8NB59 555 aa19.53■□□□□ 0.72
SHMT1-203ENST00000354098 ZNF519Q8TB69 540 aa19.53■□□□□ 0.72
SHMT1-203ENST00000354098 HDAC2Q92769 488 aaKnown RBP19.53■□□□□ 0.72
SHMT1-203ENST00000354098 ZNF566Q969W8 418 aa19.53■□□□□ 0.72
SHMT1-203ENST00000354098 IFT27Q9BW83 186 aa19.53■□□□□ 0.72
SHMT1-203ENST00000354098 GABARAPL1Q9H0R8 117 aa19.53■□□□□ 0.72
SHMT1-203ENST00000354098 KIF17Q9P2E2 1029 aa19.53■□□□□ 0.72
SHMT1-203ENST00000354098 GRHPRQ9UBQ7 328 aa19.53■□□□□ 0.72
SHMT1-203ENST00000354098 RRP9O43818 475 aaKnown RBP19.52■□□□□ 0.72
SHMT1-203ENST00000354098 TRMUO75648 421 aaKnown RBP19.52■□□□□ 0.72
SHMT1-203ENST00000354098 ACADSP16219 412 aa19.52■□□□□ 0.72
SHMT1-203ENST00000354098 SLC6A6P31641 620 aa19.52■□□□□ 0.72
SHMT1-203ENST00000354098 SLC36A3Q495N2 470 aa19.52■□□□□ 0.72
SHMT1-203ENST00000354098 OR6N1Q8NGY5 312 aa19.52■□□□□ 0.72
SHMT1-203ENST00000354098 RASD2Q96D21 266 aa19.52■□□□□ 0.72
SHMT1-203ENST00000354098 ZNF837Q96EG3 531 aaPredicted RBP19.52■□□□□ 0.72
SHMT1-203ENST00000354098 CIB1Q99828 191 aa19.52■□□□□ 0.72
SHMT1-203ENST00000354098 MRPL13Q9BYD1 178 aaKnown RBP19.52■□□□□ 0.72
SHMT1-203ENST00000354098 LINC00470Q9BZP3 86 aa19.52■□□□□ 0.72
SHMT1-203ENST00000354098 NDEL1Q9GZM8 345 aa19.52■□□□□ 0.72
SHMT1-203ENST00000354098 ADGRG4Q8IZF6 3080 aa19.52■□□□□ 0.72
SHMT1-203ENST00000354098 HCFC1P51610 2035 aa19.52■□□□□ 0.72
SHMT1-203ENST00000354098 TEX13CA0A0J9YWL9 993 aa19.52■□□□□ 0.71
SHMT1-203ENST00000354098 LYZL6O75951 148 aa19.52■□□□□ 0.71
SHMT1-203ENST00000354098 ITGA5P08648 1049 aa19.52■□□□□ 0.71
SHMT1-203ENST00000354098 CCKARP32238 428 aa19.52■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms