RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 FBXW5Q969U6 566 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 SERINC1Q9NRX5 453 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 CYSLTR2Q9NS75 346 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 ZNF629Q9UEG4 869 aaPredicted RBP14.15□□□□□ -0.14
SHH-201ENST00000297261 V9GYH0 126 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 OR5K4A6NMS3 321 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 DVL2O14641 736 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 SLC34A2O95436 690 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 SLC26A5P58743 744 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 FXYD4P59646 89 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 CDKN3Q16667 212 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 METRNLQ641Q3 311 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 KIAA0907Q7Z7F0 614 aaPredicted RBP14.14□□□□□ -0.15
SHH-201ENST00000297261 NANPQ8TBE9 248 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 SLC22A8Q8TCC7 542 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 C10orf90Q96M02 699 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 DERL3Q96Q80 235 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 BTBD2Q9BX70 525 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 BARHL1Q9BZE3 327 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 ULBP3Q9BZM4 244 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 TNFSF12-TNFSF13A0A0A6YY99 330 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 ZNF705GA8MUZ8 300 aaPredicted RBP14.14□□□□□ -0.15
SHH-201ENST00000297261 PRAMEF26H0Y7S4 382 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 ERVH48-1M5A8F1 160 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 TNFSF12O43508 249 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 ATG12O94817 140 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 PAPLNO95428 1278 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 RNH1P13489 461 aaKnown RBP14.14□□□□□ -0.15
SHH-201ENST00000297261 F3P13726 295 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 ZNF16P17020 682 aaPredicted RBP14.14□□□□□ -0.15
SHH-201ENST00000297261 CLDN6P56747 220 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 TMEM196Q5HYL7 178 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 AGBL4Q5VU57 503 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 COX15Q7KZN9 410 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 SLC16A9Q7RTY1 509 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 COMTD1Q86VU5 262 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 TBC1D20Q96BZ9 403 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 CCDC86Q9H6F5 360 aaKnown RBP14.14□□□□□ -0.15
SHH-201ENST00000297261 FGF22Q9HCT0 170 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 LRIT2A6NDA9 550 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 H0Y8X5 98 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 PHYHO14832 338 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 WNT3P56703 355 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 HHEXQ03014 270 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 SNTB1Q13884 538 aaKnown RBP14.14□□□□□ -0.15
SHH-201ENST00000297261 ZNF620Q6ZNG0 422 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 THAP3Q8WTV1 239 aaPredicted RBP14.14□□□□□ -0.15
SHH-201ENST00000297261 TMED6Q8WW62 240 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 FAM71F1Q96KD3 344 aaPredicted RBP14.14□□□□□ -0.15
SHH-201ENST00000297261 PARP12Q9H0J9 701 aaKnown RBP14.14□□□□□ -0.15
SHH-201ENST00000297261 HHLA2Q9UM44 414 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 RHBDD3Q9Y3P4 386 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 MYOFQ9NZM1 2061 aa14.14□□□□□ -0.15
SHH-201ENST00000297261 FCMRO60667 390 aa14.13□□□□□ -0.15
SHH-201ENST00000297261 SLC16A7O60669 478 aa14.13□□□□□ -0.15
SHH-201ENST00000297261 PTHLHP12272 177 aa14.13□□□□□ -0.15
SHH-201ENST00000297261 POU3F3P20264 500 aaPredicted RBP14.13□□□□□ -0.15
SHH-201ENST00000297261 ACHEP22303 614 aa14.13□□□□□ -0.15
SHH-201ENST00000297261 CDK2P24941 298 aa14.13□□□□□ -0.15
SHH-201ENST00000297261 TRA2BP62995 288 aaKnown RBP14.13□□□□□ -0.15
SHH-201ENST00000297261 GPR18Q14330 331 aa14.13□□□□□ -0.15
SHH-201ENST00000297261 ELOCQ15369 112 aa14.13□□□□□ -0.15
SHH-201ENST00000297261 ZNF79Q15937 498 aa14.13□□□□□ -0.15
SHH-201ENST00000297261 SGCAQ16586 387 aa14.13□□□□□ -0.15
SHH-201ENST00000297261 CARD17Q5XLA6 110 aa14.13□□□□□ -0.15
SHH-201ENST00000297261 TMEM225Q6GV28 225 aa14.13□□□□□ -0.15
SHH-201ENST00000297261 RNF113BQ8IZP6 322 aaKnown RBP14.13□□□□□ -0.15
SHH-201ENST00000297261 PFN4Q8NHR9 129 aa14.13□□□□□ -0.15
SHH-201ENST00000297261 PLEKHB1Q9UF11 243 aaPredicted RBP14.13□□□□□ -0.15
SHH-201ENST00000297261 FITM1A5D6W6 292 aa14.13□□□□□ -0.15
SHH-201ENST00000297261 SLC33A1O00400 549 aaPredicted RBP14.13□□□□□ -0.15
SHH-201ENST00000297261 CRTAPO75718 401 aaPredicted RBP14.13□□□□□ -0.15
SHH-201ENST00000297261 WISP3O95389 354 aaPredicted RBP14.13□□□□□ -0.15
SHH-201ENST00000297261 POU3F4P49335 361 aa14.13□□□□□ -0.15
SHH-201ENST00000297261 ST3GAL2Q16842 350 aa14.13□□□□□ -0.15
SHH-201ENST00000297261 PGAP1Q75T13 922 aa14.13□□□□□ -0.15
SHH-201ENST00000297261 CCDC71Q8IV32 467 aaPredicted RBP14.13□□□□□ -0.15
SHH-201ENST00000297261 FNDC9Q8TBE3 224 aa14.13□□□□□ -0.15
SHH-201ENST00000297261 C20orf24Q9BUV8 137 aa14.13□□□□□ -0.15
SHH-201ENST00000297261 PTDSS2Q9BVG9 487 aa14.13□□□□□ -0.15
SHH-201ENST00000297261 KLRF1Q9NZS2 232 aa14.13□□□□□ -0.15
SHH-201ENST00000297261 SERGEFQ9UGK8 458 aa14.13□□□□□ -0.15
SHH-201ENST00000297261 POM121BA6NF01 834 aa14.13□□□□□ -0.15
SHH-201ENST00000297261 SCGB1C1Q8TD33 95 aa14.13□□□□□ -0.15
SHH-201ENST00000297261 WDR89Q96FK6 387 aaPredicted RBP14.13□□□□□ -0.15
SHH-201ENST00000297261 CLCC1Q96S66 551 aa14.13□□□□□ -0.15
SHH-201ENST00000297261 SSX3Q99909 188 aa14.13□□□□□ -0.15
SHH-201ENST00000297261 TRAF4Q9BUZ4 470 aaPredicted RBP14.13□□□□□ -0.15
SHH-201ENST00000297261 FGF20Q9NP95 211 aaPredicted RBP14.13□□□□□ -0.15
SHH-201ENST00000297261 ISYNA1Q9NPH2 558 aa14.13□□□□□ -0.15
SHH-201ENST00000297261 CXCL3P19876 107 aa14.13□□□□□ -0.15
SHH-201ENST00000297261 SLC22A6Q4U2R8 563 aa14.13□□□□□ -0.15
SHH-201ENST00000297261 MAMDC2Q7Z304 686 aaPredicted RBP14.13□□□□□ -0.15
SHH-201ENST00000297261 A0A1B0GWA3 101 aa14.12□□□□□ -0.15
SHH-201ENST00000297261 TRIM64A6NGJ6 449 aa14.12□□□□□ -0.15
SHH-201ENST00000297261 TRIM64BA6NI03 449 aa14.12□□□□□ -0.15
SHH-201ENST00000297261 TSTD3H0UI37 97 aa14.12□□□□□ -0.15
SHH-201ENST00000297261 SELENOFO60613 162 aa14.12□□□□□ -0.15
SHH-201ENST00000297261 SERPINA5P05154 406 aa14.12□□□□□ -0.15
SHH-201ENST00000297261 MRPL19P49406 292 aaKnown RBP14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms