RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 HIF3AQ9Y2N7 669 aa11.73□□□□□ -0.53
VPS28-201ENST00000292510 AKAP9Q99996 3911 aa11.73□□□□□ -0.53
VPS28-201ENST00000292510 ROS1P08922 2347 aa11.72□□□□□ -0.53
VPS28-201ENST00000292510 A0A096LPE4 126 aa11.72□□□□□ -0.53
VPS28-201ENST00000292510 A0A1W2PPZ6 126 aa11.72□□□□□ -0.53
VPS28-201ENST00000292510 SEC14L2O76054 403 aa11.72□□□□□ -0.53
VPS28-201ENST00000292510 STAMBPO95630 424 aa11.72□□□□□ -0.53
VPS28-201ENST00000292510 BCL10O95999 233 aa11.72□□□□□ -0.53
VPS28-201ENST00000292510 PLAUP00749 431 aa11.72□□□□□ -0.53
VPS28-201ENST00000292510 MAGEA2P43356 314 aa11.72□□□□□ -0.53
VPS28-201ENST00000292510 OMPP47874 163 aa11.72□□□□□ -0.53
VPS28-201ENST00000292510 RPS4XP62701 263 aaKnown RBP11.72□□□□□ -0.53
VPS28-201ENST00000292510 ARF1P84077 181 aaKnown RBP11.72□□□□□ -0.53
VPS28-201ENST00000292510 TGFBR3Q03167 851 aa11.72□□□□□ -0.53
VPS28-201ENST00000292510 RUNX1T1Q06455 604 aa11.72□□□□□ -0.53
VPS28-201ENST00000292510 TRAP1Q12931 704 aaKnown RBP11.72□□□□□ -0.53
VPS28-201ENST00000292510 PPP1R8Q12972 351 aaKnown RBP11.72□□□□□ -0.53
VPS28-201ENST00000292510 TOP3AQ13472 1001 aaPredicted RBP11.72□□□□□ -0.53
VPS28-201ENST00000292510 ACKR1Q16570 336 aa11.72□□□□□ -0.53
VPS28-201ENST00000292510 ALG10Q5BKT4 473 aa11.72□□□□□ -0.53
VPS28-201ENST00000292510 OR7E24Q6IFN5 339 aa11.72□□□□□ -0.53
VPS28-201ENST00000292510 TMPRSS11FQ6ZWK6 438 aa11.72□□□□□ -0.53
VPS28-201ENST00000292510 PIWIL3Q7Z3Z3 882 aaKnown RBP11.72□□□□□ -0.53
VPS28-201ENST00000292510 OAFQ86UD1 273 aa11.72□□□□□ -0.53
VPS28-201ENST00000292510 WDR31Q8NA23 367 aa11.72□□□□□ -0.53
VPS28-201ENST00000292510 OR1K1Q8NGR3 316 aa11.72□□□□□ -0.53
VPS28-201ENST00000292510 OR6N1Q8NGY5 312 aa11.72□□□□□ -0.53
VPS28-201ENST00000292510 OR6X1Q8NH79 312 aa11.72□□□□□ -0.53
VPS28-201ENST00000292510 MUCL1Q96DR8 90 aa11.72□□□□□ -0.53
VPS28-201ENST00000292510 GPA33Q99795 319 aa11.72□□□□□ -0.53
VPS28-201ENST00000292510 USB1Q9BQ65 265 aaKnown RBP11.72□□□□□ -0.53
VPS28-201ENST00000292510 C1QTNF6Q9BXI9 259 aa11.72□□□□□ -0.53
VPS28-201ENST00000292510 NELFAQ9H3P2 528 aa11.72□□□□□ -0.53
VPS28-201ENST00000292510 SLC17A5Q9NRA2 495 aa11.72□□□□□ -0.53
VPS28-201ENST00000292510 SLC25A15Q9Y619 301 aa11.72□□□□□ -0.53
VPS28-201ENST00000292510 A0A1W2PRG6 482 aa11.71□□□□□ -0.53
VPS28-201ENST00000292510 SH3PXD2BA1X283 911 aa11.71□□□□□ -0.53
VPS28-201ENST00000292510 HTR3EA5X5Y0 456 aa11.71□□□□□ -0.53
VPS28-201ENST00000292510 MCIDASD6RGH6 385 aa11.71□□□□□ -0.53
VPS28-201ENST00000292510 RPL36A-HNRNPH2H7BZ11 118 aa11.71□□□□□ -0.53
VPS28-201ENST00000292510 GOSR1O95249 250 aa11.71□□□□□ -0.53
VPS28-201ENST00000292510 ZNF26P17031 533 aaPredicted RBP11.71□□□□□ -0.53
VPS28-201ENST00000292510 LIMS1P48059 325 aa11.71□□□□□ -0.53
VPS28-201ENST00000292510 CSNK1A1P48729 337 aa11.71□□□□□ -0.53
VPS28-201ENST00000292510 ZNF83P51522 516 aa11.71□□□□□ -0.53
VPS28-201ENST00000292510 SMIM11AP58511 58 aa11.71□□□□□ -0.53
VPS28-201ENST00000292510 TUBA1BP68363 451 aa11.71□□□□□ -0.53
VPS28-201ENST00000292510 TUBA4AP68366 448 aa11.71□□□□□ -0.53
VPS28-201ENST00000292510 CBX1P83916 185 aa11.71□□□□□ -0.53
VPS28-201ENST00000292510 CHRNB3Q05901 458 aa11.71□□□□□ -0.53
VPS28-201ENST00000292510 FLOT2Q14254 428 aa11.71□□□□□ -0.53
VPS28-201ENST00000292510 TBRG1Q3YBR2 411 aa11.71□□□□□ -0.53
VPS28-201ENST00000292510 FAM98BQ52LJ0 330 aaKnown RBP11.71□□□□□ -0.53
VPS28-201ENST00000292510 TUBA1AQ71U36 451 aa11.71□□□□□ -0.53
VPS28-201ENST00000292510 P2RY8Q86VZ1 359 aa11.71□□□□□ -0.53
VPS28-201ENST00000292510 ADGRG5Q8IZF4 528 aa11.71□□□□□ -0.53
VPS28-201ENST00000292510 CDK20Q8IZL9 346 aa11.71□□□□□ -0.53
VPS28-201ENST00000292510 LRRC75AQ8NAA5 344 aa11.71□□□□□ -0.53
VPS28-201ENST00000292510 C1orf162Q8NEQ5 155 aaPredicted RBP11.71□□□□□ -0.53
VPS28-201ENST00000292510 CANT1Q8WVQ1 401 aa11.71□□□□□ -0.53
VPS28-201ENST00000292510 ASB10Q8WXI3 467 aa11.71□□□□□ -0.53
VPS28-201ENST00000292510 TMEM54Q969K7 222 aa11.71□□□□□ -0.53
VPS28-201ENST00000292510 SLC25A44Q96H78 314 aaPredicted RBP11.71□□□□□ -0.53
VPS28-201ENST00000292510 LRR1Q96L50 414 aa11.71□□□□□ -0.53
VPS28-201ENST00000292510 ADAD1Q96M93 576 aaKnown RBP11.71□□□□□ -0.53
VPS28-201ENST00000292510 ALPK1Q96QP1 1244 aa11.71□□□□□ -0.53
VPS28-201ENST00000292510 ZNF347Q96SE7 839 aa11.71□□□□□ -0.53
VPS28-201ENST00000292510 ULBP2Q9BZM5 246 aa11.71□□□□□ -0.53
VPS28-201ENST00000292510 TRIM15Q9C019 465 aa11.71□□□□□ -0.53
VPS28-201ENST00000292510 MAGIXQ9H6Y5 334 aa11.71□□□□□ -0.53
VPS28-201ENST00000292510 PLEKHF2Q9H8W4 249 aa11.71□□□□□ -0.53
VPS28-201ENST00000292510 VNN3Q9NY84 501 aa11.71□□□□□ -0.53
VPS28-201ENST00000292510 SLC7A8Q9UHI5 535 aa11.71□□□□□ -0.53
VPS28-201ENST00000292510 ZNF346Q9UL40 294 aaKnown RBP11.71□□□□□ -0.53
VPS28-201ENST00000292510 AURKCQ9UQB9 309 aa11.71□□□□□ -0.53
VPS28-201ENST00000292510 POMPQ9Y244 141 aa11.71□□□□□ -0.53
VPS28-201ENST00000292510 TMEM5Q9Y2B1 443 aa11.71□□□□□ -0.53
VPS28-201ENST00000292510 DPRXA6NFQ7 191 aa11.7□□□□□ -0.54
VPS28-201ENST00000292510 AQP12BA6NM10 295 aa11.7□□□□□ -0.54
VPS28-201ENST00000292510 OR10H3O60404 316 aa11.7□□□□□ -0.54
VPS28-201ENST00000292510 ATP5HO75947 161 aa11.7□□□□□ -0.54
VPS28-201ENST00000292510 PGA4P0DJD7 388 aa11.7□□□□□ -0.54
VPS28-201ENST00000292510 PGA3P0DJD8 388 aa11.7□□□□□ -0.54
VPS28-201ENST00000292510 HOXC12P31275 282 aa11.7□□□□□ -0.54
VPS28-201ENST00000292510 SLC9A3P48764 834 aa11.7□□□□□ -0.54
VPS28-201ENST00000292510 DAP3P51398 398 aaKnown RBP11.7□□□□□ -0.54
VPS28-201ENST00000292510 CTXN1P60606 82 aa11.7□□□□□ -0.54
VPS28-201ENST00000292510 MYBPC1Q00872 1141 aa11.7□□□□□ -0.54
VPS28-201ENST00000292510 BSPH1Q075Z2 132 aa11.7□□□□□ -0.54
VPS28-201ENST00000292510 NCMAPQ5T1S8 102 aa11.7□□□□□ -0.54
VPS28-201ENST00000292510 ZER1Q7Z7L7 766 aa11.7□□□□□ -0.54
VPS28-201ENST00000292510 CDH24Q86UP0 819 aa11.7□□□□□ -0.54
VPS28-201ENST00000292510 SPATA24Q86W54 205 aa11.7□□□□□ -0.54
VPS28-201ENST00000292510 AQP12AQ8IXF9 295 aa11.7□□□□□ -0.54
VPS28-201ENST00000292510 C17orf78Q8N4C9 275 aa11.7□□□□□ -0.54
VPS28-201ENST00000292510 SYT14Q8NB59 555 aa11.7□□□□□ -0.54
VPS28-201ENST00000292510 BCL2L2Q92843 193 aaPredicted RBP11.7□□□□□ -0.54
VPS28-201ENST00000292510 ZNF566Q969W8 418 aa11.7□□□□□ -0.54
VPS28-201ENST00000292510 TSPAN32Q96QS1 320 aa11.7□□□□□ -0.54
VPS28-201ENST00000292510 B3GAT2Q9NPZ5 323 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms