RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 RIMS3Q9UJD0 308 aa12.56□□□□□ -0.4
HMGN3-201ENST00000275036 ATP23Q9Y6H3 246 aa12.56□□□□□ -0.4
HMGN3-201ENST00000275036 ABCA2Q9BZC7 2435 aa12.56□□□□□ -0.4
HMGN3-201ENST00000275036 HIVEP2P31629 2446 aa12.55□□□□□ -0.4
HMGN3-201ENST00000275036 ZNF99A8MXY4 864 aaPredicted RBP12.55□□□□□ -0.4
HMGN3-201ENST00000275036 INAFM1C9JVW0 142 aa12.55□□□□□ -0.4
HMGN3-201ENST00000275036 OR5F1O95221 314 aa12.55□□□□□ -0.4
HMGN3-201ENST00000275036 IGLV1-44P01699 117 aa12.55□□□□□ -0.4
HMGN3-201ENST00000275036 CELA3BP08861 270 aa12.55□□□□□ -0.4
HMGN3-201ENST00000275036 CECR9P0C854 216 aa12.55□□□□□ -0.4
HMGN3-201ENST00000275036 IFNGR1P15260 489 aa12.55□□□□□ -0.4
HMGN3-201ENST00000275036 DRD4P21917 467 aa12.55□□□□□ -0.4
HMGN3-201ENST00000275036 PCSK6P29122 969 aa12.55□□□□□ -0.4
HMGN3-201ENST00000275036 FABP6P51161 128 aa12.55□□□□□ -0.4
HMGN3-201ENST00000275036 SLC7A2P52569 658 aa12.55□□□□□ -0.4
HMGN3-201ENST00000275036 GYS2P54840 703 aa12.55□□□□□ -0.4
HMGN3-201ENST00000275036 BIDP55957 195 aa12.55□□□□□ -0.4
HMGN3-201ENST00000275036 TAS2R41P59536 307 aa12.55□□□□□ -0.4
HMGN3-201ENST00000275036 UBE2NP61088 152 aaKnown RBP12.55□□□□□ -0.4
HMGN3-201ENST00000275036 SELENOWP63302 87 aa12.55□□□□□ -0.4
HMGN3-201ENST00000275036 LIPEQ05469 1076 aa12.55□□□□□ -0.4
HMGN3-201ENST00000275036 ZP4Q12836 540 aa12.55□□□□□ -0.4
HMGN3-201ENST00000275036 ARPINQ7Z6K5 226 aa12.55□□□□□ -0.4
HMGN3-201ENST00000275036 DEPDC4Q8N2C3 294 aa12.55□□□□□ -0.4
HMGN3-201ENST00000275036 TPD52L3Q96J77 140 aa12.55□□□□□ -0.4
HMGN3-201ENST00000275036 CBLN4Q9NTU7 201 aa12.55□□□□□ -0.4
HMGN3-201ENST00000275036 C20orf141Q9NUB4 165 aa12.55□□□□□ -0.4
HMGN3-201ENST00000275036 ZNF229Q9UJW7 825 aa12.55□□□□□ -0.4
HMGN3-201ENST00000275036 IFNA14P01570 189 aa12.54□□□□□ -0.4
HMGN3-201ENST00000275036 IGKV3-15P01624 115 aa12.54□□□□□ -0.4
HMGN3-201ENST00000275036 MT-ND1P03886 318 aa12.54□□□□□ -0.4
HMGN3-201ENST00000275036 HOXB1P14653 301 aaPredicted RBP12.54□□□□□ -0.4
HMGN3-201ENST00000275036 CALCRP30988 508 aa12.54□□□□□ -0.4
HMGN3-201ENST00000275036 GSK3BP49841 420 aa12.54□□□□□ -0.4
HMGN3-201ENST00000275036 LSM11P83369 360 aaKnown RBP eCLIP12.54□□□□□ -0.42e-7■■□□□ 11.8
HMGN3-201ENST00000275036 NAAAQ02083 359 aa12.54□□□□□ -0.4
HMGN3-201ENST00000275036 MELKQ14680 651 aa12.54□□□□□ -0.4
HMGN3-201ENST00000275036 ETFDHQ16134 617 aa12.54□□□□□ -0.4
HMGN3-201ENST00000275036 ZNF544Q6NX49 715 aa12.54□□□□□ -0.4
HMGN3-201ENST00000275036 SLC35D2Q76EJ3 337 aa12.54□□□□□ -0.4
HMGN3-201ENST00000275036 VTCN1Q7Z7D3 282 aa12.54□□□□□ -0.4
HMGN3-201ENST00000275036 PRIMA1Q86XR5 153 aa12.54□□□□□ -0.4
HMGN3-201ENST00000275036 FBXL14Q8N1E6 418 aa12.54□□□□□ -0.4
HMGN3-201ENST00000275036 POLR2J2Q9GZM3 115 aaKnown RBP12.54□□□□□ -0.4
HMGN3-201ENST00000275036 FAM107BQ9H098 131 aa12.54□□□□□ -0.4
HMGN3-201ENST00000275036 POLR2J3Q9H1A7 115 aaKnown RBP12.54□□□□□ -0.4
HMGN3-201ENST00000275036 EFCAB1Q9HAE3 211 aa12.54□□□□□ -0.4
HMGN3-201ENST00000275036 NOX3Q9HBY0 568 aa12.54□□□□□ -0.4
HMGN3-201ENST00000275036 A4GNTQ9UNA3 340 aa12.54□□□□□ -0.4
HMGN3-201ENST00000275036 SNX13Q9Y5W8 968 aa12.54□□□□□ -0.4
HMGN3-201ENST00000275036 CUBNO60494 3623 aa12.54□□□□□ -0.4
HMGN3-201ENST00000275036 IGHV4-30-2A0A087WSY4 118 aa12.53□□□□□ -0.4
HMGN3-201ENST00000275036 A0A096LNT2 108 aa12.53□□□□□ -0.4
HMGN3-201ENST00000275036 ZNF726A6NNF4 738 aa12.53□□□□□ -0.4
HMGN3-201ENST00000275036 CXCR6O00574 342 aa12.53□□□□□ -0.4
HMGN3-201ENST00000275036 RNF13O43567 381 aa12.53□□□□□ -0.4
HMGN3-201ENST00000275036 SSX4O60224 188 aa12.53□□□□□ -0.4
HMGN3-201ENST00000275036 PIP5K1CO60331 668 aa12.53□□□□□ -0.4
HMGN3-201ENST00000275036 SNX3O60493 162 aa12.53□□□□□ -0.4
HMGN3-201ENST00000275036 OR6A2O95222 327 aa12.53□□□□□ -0.4
HMGN3-201ENST00000275036 UMPSP11172 480 aa12.53□□□□□ -0.4
HMGN3-201ENST00000275036 CBR1P16152 277 aa12.53□□□□□ -0.4
HMGN3-201ENST00000275036 APOBEC3AP31941 199 aaPredicted RBP12.53□□□□□ -0.4
HMGN3-201ENST00000275036 LSP1P33241 339 aa12.53□□□□□ -0.4
HMGN3-201ENST00000275036 RBM34P42696 430 aaKnown RBP12.53□□□□□ -0.4
HMGN3-201ENST00000275036 NUDT2P50583 147 aa12.53□□□□□ -0.4
HMGN3-201ENST00000275036 MST1LQ2TV78 715 aa12.53□□□□□ -0.4
HMGN3-201ENST00000275036 C3orf36Q3SXR2 165 aa12.53□□□□□ -0.4
HMGN3-201ENST00000275036 HACD2Q6Y1H2 254 aa12.53□□□□□ -0.4
HMGN3-201ENST00000275036 ZNF627Q7L945 461 aa12.53□□□□□ -0.4
HMGN3-201ENST00000275036 NANOGNBQ7Z5D8 188 aa12.53□□□□□ -0.4
HMGN3-201ENST00000275036 MDP1Q86V88 176 aa12.53□□□□□ -0.4
HMGN3-201ENST00000275036 FAM169BQ8N8A8 192 aa12.53□□□□□ -0.4
HMGN3-201ENST00000275036 OR6N1Q8NGY5 312 aa12.53□□□□□ -0.4
HMGN3-201ENST00000275036 OR6X1Q8NH79 312 aa12.53□□□□□ -0.4
HMGN3-201ENST00000275036 TMEM239Q8WW34 195 aa12.53□□□□□ -0.4
HMGN3-201ENST00000275036 TMEM54Q969K7 222 aa12.53□□□□□ -0.4
HMGN3-201ENST00000275036 HOPXQ9BPY8 73 aaPredicted RBP12.53□□□□□ -0.4
HMGN3-201ENST00000275036 KATNB1Q9BVA0 655 aa12.53□□□□□ -0.4
HMGN3-201ENST00000275036 REG4Q9BYZ8 158 aa12.53□□□□□ -0.4
HMGN3-201ENST00000275036 ULBP2Q9BZM5 246 aa12.53□□□□□ -0.4
HMGN3-201ENST00000275036 B3GNT2Q9NY97 397 aa12.53□□□□□ -0.4
HMGN3-201ENST00000275036 ZNF224Q9NZL3 707 aa12.53□□□□□ -0.4
HMGN3-201ENST00000275036 AP3M1Q9Y2T2 418 aa12.53□□□□□ -0.4
HMGN3-201ENST00000275036 JMJD1CQ15652 2540 aa12.52□□□□□ -0.4
HMGN3-201ENST00000275036 BLOC1S5-TXNDC5H3BN57 136 aa12.52□□□□□ -0.41
HMGN3-201ENST00000275036 J3KTA2 159 aa12.52□□□□□ -0.41
HMGN3-201ENST00000275036 FFAR1O14842 300 aa12.52□□□□□ -0.41
HMGN3-201ENST00000275036 OR7A10O76100 309 aa12.52□□□□□ -0.41
HMGN3-201ENST00000275036 IGF2P01344 180 aa12.52□□□□□ -0.41
HMGN3-201ENST00000275036 HLA-HP01893 362 aa12.52□□□□□ -0.41
HMGN3-201ENST00000275036 TSPAN19P0C672 248 aa12.52□□□□□ -0.41
HMGN3-201ENST00000275036 THRBP10828 461 aa12.52□□□□□ -0.41
HMGN3-201ENST00000275036 B4GALT1P15291 398 aa12.52□□□□□ -0.41
HMGN3-201ENST00000275036 FUT1P19526 365 aa12.52□□□□□ -0.41
HMGN3-201ENST00000275036 YAP1P46937 504 aaKnown RBP12.52□□□□□ -0.41
HMGN3-201ENST00000275036 CSNK1A1P48729 337 aa12.52□□□□□ -0.41
HMGN3-201ENST00000275036 IDH3GP51553 393 aaPredicted RBP12.52□□□□□ -0.41
HMGN3-201ENST00000275036 RPL18Q07020 188 aaKnown RBP12.52□□□□□ -0.41
HMGN3-201ENST00000275036 CBLL1Q75N03 491 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms