RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 CDK20Q8IZL9 346 aa16.1■□□□□ 0.17
CLN3-259ENST00000637551 OR6X1Q8NH79 312 aa16.1■□□□□ 0.17
CLN3-259ENST00000637551 NINJ1Q92982 152 aa16.1■□□□□ 0.17
CLN3-259ENST00000637551 BPIFA2Q96DR5 249 aa16.1■□□□□ 0.17
CLN3-259ENST00000637551 MUCL1Q96DR8 90 aa16.1■□□□□ 0.17
CLN3-259ENST00000637551 TRIM15Q9C019 465 aa16.1■□□□□ 0.17
CLN3-259ENST00000637551 NDEL1Q9GZM8 345 aa16.1■□□□□ 0.17
CLN3-259ENST00000637551 MMADHCQ9H3L0 296 aaPredicted RBP16.1■□□□□ 0.17
CLN3-259ENST00000637551 HIF3AQ9Y2N7 669 aa16.1■□□□□ 0.17
CLN3-259ENST00000637551 AMDHD2Q9Y303 409 aa16.1■□□□□ 0.17
CLN3-259ENST00000637551 PRR14LQ5THK1 2151 aa16.09■□□□□ 0.17
CLN3-259ENST00000637551 GYG2O15488 501 aa16.09■□□□□ 0.17
CLN3-259ENST00000637551 MGRN1O60291 552 aa16.09■□□□□ 0.17
CLN3-259ENST00000637551 TMCC2O75069 709 aa16.09■□□□□ 0.17
CLN3-259ENST00000637551 KRT36O76013 467 aa16.09■□□□□ 0.17
CLN3-259ENST00000637551 FABP3P05413 133 aa16.09■□□□□ 0.17
CLN3-259ENST00000637551 THBDP07204 575 aa16.09■□□□□ 0.17
CLN3-259ENST00000637551 ITGA5P08648 1049 aa16.09■□□□□ 0.17
CLN3-259ENST00000637551 EDNRAP25101 427 aa16.09■□□□□ 0.17
CLN3-259ENST00000637551 CLDN17P56750 224 aa16.09■□□□□ 0.17
CLN3-259ENST00000637551 VLDLRP98155 873 aa16.09■□□□□ 0.17
CLN3-259ENST00000637551 POU3F1Q03052 451 aaPredicted RBP16.09■□□□□ 0.17
CLN3-259ENST00000637551 FAPQ12884 760 aa16.09■□□□□ 0.17
CLN3-259ENST00000637551 BNIP1Q12981 228 aa16.09■□□□□ 0.17
CLN3-259ENST00000637551 FAM205BPQ63HN1 556 aa16.09■□□□□ 0.17
CLN3-259ENST00000637551 NIPAL3Q6P499 406 aa16.09■□□□□ 0.17
CLN3-259ENST00000637551 TMPRSS11FQ6ZWK6 438 aa16.09■□□□□ 0.17
CLN3-259ENST00000637551 TSEN54Q7Z6J9 526 aaKnown RBP16.09■□□□□ 0.17
CLN3-259ENST00000637551 ZNF775Q96BV0 537 aaPredicted RBP16.09■□□□□ 0.17
CLN3-259ENST00000637551 OR2M2Q96R28 347 aa16.09■□□□□ 0.17
CLN3-259ENST00000637551 BTBD10Q9BSF8 475 aa16.09■□□□□ 0.17
CLN3-259ENST00000637551 POLDIP3Q9BY77 421 aaKnown RBP16.09■□□□□ 0.17
CLN3-259ENST00000637551 B3GAT2Q9NPZ5 323 aa16.09■□□□□ 0.17
CLN3-259ENST00000637551 TAS2R5Q9NYW4 299 aa16.09■□□□□ 0.17
CLN3-259ENST00000637551 SEC14L4Q9UDX3 406 aa16.09■□□□□ 0.17
CLN3-259ENST00000637551 PLCE1Q9P212 2302 aa16.08■□□□□ 0.17
CLN3-259ENST00000637551 A0A087WUU8 490 aa16.08■□□□□ 0.16
CLN3-259ENST00000637551 HPRP00739 348 aa16.08■□□□□ 0.16
CLN3-259ENST00000637551 FUT1P19526 365 aa16.08■□□□□ 0.16
CLN3-259ENST00000637551 SELENOPP49908 381 aa16.08■□□□□ 0.16
CLN3-259ENST00000637551 DAP3P51398 398 aaKnown RBP16.08■□□□□ 0.16
CLN3-259ENST00000637551 PRPS1P60891 318 aa16.08■□□□□ 0.16
CLN3-259ENST00000637551 TAB1Q15750 504 aa16.08■□□□□ 0.16
CLN3-259ENST00000637551 GABRA6Q16445 453 aa16.08■□□□□ 0.16
CLN3-259ENST00000637551 C3orf36Q3SXR2 165 aa16.08■□□□□ 0.16
CLN3-259ENST00000637551 PGM2L1Q6PCE3 622 aa16.08■□□□□ 0.16
CLN3-259ENST00000637551 ZNF730Q6ZMV8 503 aa16.08■□□□□ 0.16
CLN3-259ENST00000637551 RRM2BQ7LG56 351 aa16.08■□□□□ 0.16
CLN3-259ENST00000637551 LINC00471Q8N535 108 aa16.08■□□□□ 0.16
CLN3-259ENST00000637551 FAM169BQ8N8A8 192 aa16.08■□□□□ 0.16
CLN3-259ENST00000637551 FNDC8Q8TC99 324 aa16.08■□□□□ 0.16
CLN3-259ENST00000637551 SLC7A13Q8TCU3 470 aa16.08■□□□□ 0.16
CLN3-259ENST00000637551 SEPHS2Q99611 448 aa16.08■□□□□ 0.16
CLN3-259ENST00000637551 ESRP2Q9H6T0 727 aaKnown RBP16.08■□□□□ 0.16
CLN3-259ENST00000637551 ROS1P08922 2347 aa16.08■□□□□ 0.16
CLN3-259ENST00000637551 CADP27708 2225 aa16.07■□□□□ 0.16
CLN3-259ENST00000637551 A0A1W2PRG6 482 aa16.07■□□□□ 0.16
CLN3-259ENST00000637551 CIB4A0PJX0 185 aa16.07■□□□□ 0.16
CLN3-259ENST00000637551 AQP12BA6NM10 295 aa16.07■□□□□ 0.16
CLN3-259ENST00000637551 KPNA4O00629 521 aaPredicted RBP16.07■□□□□ 0.16
CLN3-259ENST00000637551 KLF4O43474 513 aa16.07■□□□□ 0.16
CLN3-259ENST00000637551 LYZL6O75951 148 aa16.07■□□□□ 0.16
CLN3-259ENST00000637551 KRT33AO76009 404 aa16.07■□□□□ 0.16
CLN3-259ENST00000637551 IGHMP01871 453 aa16.07■□□□□ 0.16
CLN3-259ENST00000637551 UMPSP11172 480 aa16.07■□□□□ 0.16
CLN3-259ENST00000637551 HOXC12P31275 282 aa16.07■□□□□ 0.16
CLN3-259ENST00000637551 DNAJA1P31689 397 aaKnown RBP16.07■□□□□ 0.16
CLN3-259ENST00000637551 PPA1Q15181 289 aa16.07■□□□□ 0.16
CLN3-259ENST00000637551 NRN1LQ496H8 165 aa16.07■□□□□ 0.16
CLN3-259ENST00000637551 SEZ6L2Q6UXD5 910 aa16.07■□□□□ 0.16
CLN3-259ENST00000637551 AQP12AQ8IXF9 295 aa16.07■□□□□ 0.16
CLN3-259ENST00000637551 NRMQ8IXM6 262 aa16.07■□□□□ 0.16
CLN3-259ENST00000637551 C20orf196Q8IYI0 205 aa16.07■□□□□ 0.16
CLN3-259ENST00000637551 GPR137CQ8N3F9 429 aa16.07■□□□□ 0.16
CLN3-259ENST00000637551 FAM86B1Q8N7N1 296 aa16.07■□□□□ 0.16
CLN3-259ENST00000637551 PFN4Q8NHR9 129 aa16.07■□□□□ 0.16
CLN3-259ENST00000637551 SLC7A6OSQ96CW6 309 aaPredicted RBP16.07■□□□□ 0.16
CLN3-259ENST00000637551 SLC25A44Q96H78 314 aaPredicted RBP16.07■□□□□ 0.16
CLN3-259ENST00000637551 RADILQ96JH8 1075 aa16.07■□□□□ 0.16
CLN3-259ENST00000637551 TMEM204Q9BSN7 226 aa16.07■□□□□ 0.16
CLN3-259ENST00000637551 FUZQ9BT04 418 aa16.07■□□□□ 0.16
CLN3-259ENST00000637551 C20orf141Q9NUB4 165 aa16.07■□□□□ 0.16
CLN3-259ENST00000637551 DNHD1Q96M86 4753 aa16.06■□□□□ 0.16
CLN3-259ENST00000637551 ARPC4-TTLL3A0A0A6YYG9 625 aa16.06■□□□□ 0.16
CLN3-259ENST00000637551 TCRBV5S2A0A599 114 aa16.06■□□□□ 0.16
CLN3-259ENST00000637551 ZNF726A6NNF4 738 aa16.06■□□□□ 0.16
CLN3-259ENST00000637551 LRRN3E7EW58 273 aa16.06■□□□□ 0.16
CLN3-259ENST00000637551 J3KTA2 159 aa16.06■□□□□ 0.16
CLN3-259ENST00000637551 RNF13O43567 381 aa16.06■□□□□ 0.16
CLN3-259ENST00000637551 DNAJC8O75937 253 aaPredicted RBP16.06■□□□□ 0.16
CLN3-259ENST00000637551 WNT11O96014 354 aa16.06■□□□□ 0.16
CLN3-259ENST00000637551 IFI30P13284 250 aa16.06■□□□□ 0.16
CLN3-259ENST00000637551 AHCYP23526 432 aa16.06■□□□□ 0.16
CLN3-259ENST00000637551 IFNGR2P38484 337 aa16.06■□□□□ 0.16
CLN3-259ENST00000637551 HMGA2P52926 109 aa16.06■□□□□ 0.16
CLN3-259ENST00000637551 IL1RL1Q01638 556 aa16.06■□□□□ 0.16
CLN3-259ENST00000637551 RPL18Q07020 188 aaKnown RBP16.06■□□□□ 0.16
CLN3-259ENST00000637551 SNTB1Q13884 538 aaKnown RBP16.06■□□□□ 0.16
CLN3-259ENST00000637551 FAM98BQ52LJ0 330 aaKnown RBP16.06■□□□□ 0.16
CLN3-259ENST00000637551 HMBOX1Q6NT76 420 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms