RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 SSX1Q16384 188 aa15.15■□□□□ 0.02
CLN3-252ENST00000636907 SLC35D3Q5M8T2 416 aa15.15■□□□□ 0.02
CLN3-252ENST00000636907 LCN1P1Q5VSP4 162 aa15.15■□□□□ 0.02
CLN3-252ENST00000636907 ERI1Q8IV48 349 aaKnown RBP15.15■□□□□ 0.02
CLN3-252ENST00000636907 ACBD7Q8N6N7 88 aa15.15■□□□□ 0.02
CLN3-252ENST00000636907 GATAD2BQ8WXI9 593 aa15.15■□□□□ 0.02
CLN3-252ENST00000636907 SMPDL3BQ92485 455 aa15.15■□□□□ 0.02
CLN3-252ENST00000636907 SLC39A7Q92504 469 aa15.15■□□□□ 0.02
CLN3-252ENST00000636907 RPL3LQ92901 407 aaKnown RBP15.15■□□□□ 0.02
CLN3-252ENST00000636907 C5orf34Q96MH7 638 aa15.15■□□□□ 0.02
CLN3-252ENST00000636907 TSSK2Q96PF2 358 aa15.15■□□□□ 0.02
CLN3-252ENST00000636907 TBX5Q99593 518 aa15.15■□□□□ 0.02
CLN3-252ENST00000636907 DCUN1D5Q9BTE7 237 aa15.15■□□□□ 0.02
CLN3-252ENST00000636907 HES7Q9BYE0 225 aa15.15■□□□□ 0.02
CLN3-252ENST00000636907 B3GALT5Q9Y2C3 310 aa15.15■□□□□ 0.02
CLN3-252ENST00000636907 HDGFL3Q9Y3E1 203 aa15.15■□□□□ 0.02
CLN3-252ENST00000636907 TRABD2BA6NFA1 517 aa15.14■□□□□ 0.01
CLN3-252ENST00000636907 GFRA3O60609 400 aa15.14■□□□□ 0.01
CLN3-252ENST00000636907 RENP00797 406 aa15.14■□□□□ 0.01
CLN3-252ENST00000636907 GADD45AP24522 165 aa15.14■□□□□ 0.01
CLN3-252ENST00000636907 PYCR1P32322 319 aa15.14■□□□□ 0.01
CLN3-252ENST00000636907 SOX8P57073 446 aa15.14■□□□□ 0.01
CLN3-252ENST00000636907 OR2B6P58173 313 aa15.14■□□□□ 0.01
CLN3-252ENST00000636907 B3GALT5-AS1P59052 145 aa15.14■□□□□ 0.01
CLN3-252ENST00000636907 LSM3P62310 102 aaKnown RBP15.14■□□□□ 0.01
CLN3-252ENST00000636907 FOXO1Q12778 655 aa15.14■□□□□ 0.01
CLN3-252ENST00000636907 POU4F2Q12837 409 aa15.14■□□□□ 0.01
CLN3-252ENST00000636907 MLLT11Q13015 90 aaPredicted RBP15.14■□□□□ 0.01
CLN3-252ENST00000636907 GGTLC2Q14390 218 aa15.14■□□□□ 0.01
CLN3-252ENST00000636907 MELKQ14680 651 aa15.14■□□□□ 0.01
CLN3-252ENST00000636907 RSPO4Q2I0M5 234 aaPredicted RBP15.14■□□□□ 0.01
CLN3-252ENST00000636907 YRDCQ86U90 279 aaKnown RBP15.14■□□□□ 0.01
CLN3-252ENST00000636907 KLHL36Q8N4N3 616 aa15.14■□□□□ 0.01
CLN3-252ENST00000636907 ZNF485Q8NCK3 441 aa15.14■□□□□ 0.01
CLN3-252ENST00000636907 ZNF248Q8NDW4 579 aa15.14■□□□□ 0.01
CLN3-252ENST00000636907 OR10H4Q8NGA5 316 aa15.14■□□□□ 0.01
CLN3-252ENST00000636907 SMAP2Q8WU79 429 aaPredicted RBP15.14■□□□□ 0.01
CLN3-252ENST00000636907 BCL7BQ9BQE9 202 aa15.14■□□□□ 0.01
CLN3-252ENST00000636907 ZFP64Q9NPA5 681 aa15.14■□□□□ 0.01
CLN3-252ENST00000636907 A0A1W2PRG6 482 aa15.13■□□□□ 0.01
CLN3-252ENST00000636907 DCDC2BA2VCK2 349 aa15.13■□□□□ 0.01
CLN3-252ENST00000636907 FAM171A2A8MVW0 826 aa15.13■□□□□ 0.01
CLN3-252ENST00000636907 DCTN6O00399 190 aa15.13■□□□□ 0.01
CLN3-252ENST00000636907 CCRL2O00421 344 aa15.13■□□□□ 0.01
CLN3-252ENST00000636907 XKRYO14609 159 aa15.13■□□□□ 0.01
CLN3-252ENST00000636907 GLCEO94923 617 aa15.13■□□□□ 0.01
CLN3-252ENST00000636907 TFP02787 698 aa15.13■□□□□ 0.01
CLN3-252ENST00000636907 NFATC3Q12968 1075 aa15.13■□□□□ 0.01
CLN3-252ENST00000636907 SPCS2Q15005 226 aa15.13■□□□□ 0.01
CLN3-252ENST00000636907 LINC01590Q5TEZ4 76 aa15.13■□□□□ 0.01
CLN3-252ENST00000636907 AGAP7PQ5VUJ5 663 aa15.13■□□□□ 0.01
CLN3-252ENST00000636907 C19orf48Q6RUI8 117 aa15.13■□□□□ 0.01
CLN3-252ENST00000636907 ATCAYQ86WG3 371 aa15.13■□□□□ 0.01
CLN3-252ENST00000636907 PM20D2Q8IYS1 436 aa15.13■□□□□ 0.01
CLN3-252ENST00000636907 OR2M7Q8NG81 312 aa15.13■□□□□ 0.01
CLN3-252ENST00000636907 OR6K6Q8NGW6 343 aa15.13■□□□□ 0.01
CLN3-252ENST00000636907 TM9SF4Q92544 642 aa15.13■□□□□ 0.01
CLN3-252ENST00000636907 MIB2Q96AX9 1013 aa15.13■□□□□ 0.01
CLN3-252ENST00000636907 AGAP4Q96P64 663 aa15.13■□□□□ 0.01
CLN3-252ENST00000636907 CNN2Q99439 309 aaKnown RBP15.13■□□□□ 0.01
CLN3-252ENST00000636907 FAM173AQ9BQD7 235 aa15.13■□□□□ 0.01
CLN3-252ENST00000636907 PIGQQ9BRB3 760 aa15.13■□□□□ 0.01
CLN3-252ENST00000636907 SYT4Q9H2B2 425 aa15.13■□□□□ 0.01
CLN3-252ENST00000636907 SRA1Q9HD15 236 aaKnown RBP15.13■□□□□ 0.01
CLN3-252ENST00000636907 FANCFQ9NPI8 374 aa15.13■□□□□ 0.01
CLN3-252ENST00000636907 TRAPPC4Q9Y296 219 aa15.13■□□□□ 0.01
CLN3-252ENST00000636907 NCKAP5O14513 1909 aa15.13■□□□□ 0.01
CLN3-252ENST00000636907 DAPL1A0PJW8 107 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 NAA10P41227 235 aaPredicted RBP15.12■□□□□ 0.01
CLN3-252ENST00000636907 P2RY4P51582 365 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 VBP1P61758 197 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 POU3F1Q03052 451 aaPredicted RBP15.12■□□□□ 0.01
CLN3-252ENST00000636907 TBC1D25Q3MII6 688 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 LYPD4Q6UWN0 246 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 TMPPEQ6ZT21 453 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 ADCK1Q86TW2 530 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 POMGNT2Q8NAT1 580 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 ADPRHL1Q8NDY3 354 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 FAM83FQ8NEG4 500 aaPredicted RBP15.12■□□□□ 0.01
CLN3-252ENST00000636907 OR52N1Q8NH53 320 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 OR14L1PQ8NHC6 308 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 SPRYD4Q8WW59 207 aaPredicted RBP15.12■□□□□ 0.01
CLN3-252ENST00000636907 SNX18Q96RF0 628 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 ARHGAP9Q9BRR9 750 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 ALG12Q9BV10 488 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 ALG8Q9BVK2 526 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 OR51E2Q9H255 320 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 INPP5EQ9NRR6 644 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 B3GAT1Q9P2W7 334 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 BOKQ9UMX3 212 aaPredicted RBP15.12■□□□□ 0.01
CLN3-252ENST00000636907 A0A1W2PNV4 684 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 PRSS37A4D1T9 235 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 ZNF814B7Z6K7 855 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 SULT2B1O00204 365 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 AIREO43918 545 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 SELENOFO60613 162 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 TRAPPC6AO75865 159 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 IFNGR1P15260 489 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 HCCSP53701 268 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 NCS1P62166 190 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms