RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 DRAXINQ8NBI3 349 aaPredicted RBP3.7□□□□□ -1.82
LINC00540-201ENST00000611481 NFAM1Q8NET5 270 aaPredicted RBP3.7□□□□□ -1.82
LINC00540-201ENST00000611481 ZNF671Q8TAW3 534 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 MIPOL1Q8TD10 442 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 SYN2Q92777 582 aaPredicted RBP3.7□□□□□ -1.82
LINC00540-201ENST00000611481 FAM46BQ96A09 425 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 TMIGD2Q96BF3 282 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 ORAI1Q96D31 301 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 C16orf58Q96GQ5 468 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 COL21A1Q96P44 957 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 RBM14Q96PK6 669 aaKnown RBP3.7□□□□□ -1.82
LINC00540-201ENST00000611481 CSPG4P5Q96PW8 444 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 RASL10BQ96S79 203 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 ACTR6Q9GZN1 396 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 STMN4Q9H169 189 aaPredicted RBP3.7□□□□□ -1.82
LINC00540-201ENST00000611481 DHX35Q9H5Z1 703 aaKnown RBP3.7□□□□□ -1.82
LINC00540-201ENST00000611481 CDH20Q9HBT6 801 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 TCF7L2Q9NQB0 619 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 FAM114A2Q9NRY5 505 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 HOMER3Q9NSC5 361 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 CBLN4Q9NTU7 201 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 QPCTLQ9NXS2 382 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 ZMAT5Q9UDW3 170 aaKnown RBP3.7□□□□□ -1.82
LINC00540-201ENST00000611481 GAGE2DQ9UEU5 116 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 ZDHHC2Q9UIJ5 367 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 ZNF223Q9UK11 482 aaPredicted RBP3.7□□□□□ -1.82
LINC00540-201ENST00000611481 GRIP1Q9Y3R0 1128 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 LYSTQ99698 3801 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 TRBV5-7A0A0A0MS05 114 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 NCF1BA6NI72 391 aaPredicted RBP3.69□□□□□ -1.82
LINC00540-201ENST00000611481 NCF1CA8MVU1 366 aaPredicted RBP3.69□□□□□ -1.82
LINC00540-201ENST00000611481 H0YIG0 161 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 H7C417 338 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 GFYI3L273 518 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 J3QR06 171 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 K7EQM0 130 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 SLC28A1O00337 649 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 P2RX6O15547 441 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 PRAF2O60831 178 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 RAMP1O60894 148 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 VPS26AO75436 327 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 CIB2O75838 187 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 RGS11O94810 467 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 NDUFB4O95168 129 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 AP2A1O95782 977 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 IGHV2-70P01814 119 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 FHP07954 510 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 CLUP10909 449 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 FCGR1AP12314 374 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 CPA3P15088 417 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 ARSBP15848 533 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 IL1RNP18510 177 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 MAOAP21397 527 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 DRD5P21918 477 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 CD9P21926 228 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 HRH2P25021 359 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 CDH5P33151 784 aaPredicted RBP3.69□□□□□ -1.82
LINC00540-201ENST00000611481 NSFP46459 744 aaKnown RBP3.69□□□□□ -1.82
LINC00540-201ENST00000611481 MAPK12P53778 367 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 AIF1P55008 147 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 CDH11P55287 796 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 KRTAP10-3P60369 221 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 ACTR3P61158 418 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 SEC61A1P61619 476 aaKnown RBP3.69□□□□□ -1.82
LINC00540-201ENST00000611481 ABATP80404 500 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 HSF2Q03933 536 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 BSPH1Q075Z2 132 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 LCP2Q13094 533 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 MAD2L1Q13257 205 aaPredicted RBP3.69□□□□□ -1.82
LINC00540-201ENST00000611481 CUL3Q13618 768 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 ITGA9Q13797 1035 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 FAM53BQ14153 422 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 PIGHQ14442 188 aaPredicted RBP3.69□□□□□ -1.82
LINC00540-201ENST00000611481 EFTUD2Q15029 972 aaKnown RBP eCLIP3.69□□□□□ -1.82
LINC00540-201ENST00000611481 RCN1Q15293 331 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 ZNHIT3Q15649 155 aaPredicted RBP3.69□□□□□ -1.82
LINC00540-201ENST00000611481 PDK4Q16654 411 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 NDUFA9Q16795 377 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 TAF3Q5VWG9 929 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 PRAMEF7Q5VXH5 474 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 FAHD2BQ6P2I3 314 aaPredicted RBP3.69□□□□□ -1.82
LINC00540-201ENST00000611481 FAM173BQ6P4H8 233 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 ENPP6Q6UWR7 440 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 SLC16A12Q6ZSM3 486 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 CREB3L2Q70SY1 520 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 P4HA3Q7Z4N8 544 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 LUZP1Q86V48 1076 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 MISPQ8IVT2 679 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 LAX1Q8IWV1 398 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 ARHGAP24Q8N264 748 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 TEX26Q8N6G2 289 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 SIGLECL1Q8N7X8 197 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 GBP7Q8N8V2 638 aaPredicted RBP3.69□□□□□ -1.82
LINC00540-201ENST00000611481 MINDY2Q8NBR6 621 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 APCDD1LQ8NCL9 501 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 BBOF1Q8ND07 529 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 B3GNT7Q8NFL0 401 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 OR2AJ1Q8NGZ0 328 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 OR5K2Q8NHB8 316 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 MUC7Q8TAX7 377 aa3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms