RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 RSPO3Q9BXY4 272 aaPredicted RBP12.4□□□□□ -0.42
LIG1-218ENST00000599322 SEC14L4Q9UDX3 406 aa12.4□□□□□ -0.42
LIG1-218ENST00000599322 RIMS3Q9UJD0 308 aa12.4□□□□□ -0.42
LIG1-218ENST00000599322 MED31Q9Y3C7 131 aa12.4□□□□□ -0.42
LIG1-218ENST00000599322 C11orf98E9PRG8 122 aa12.39□□□□□ -0.43
LIG1-218ENST00000599322 MS4A18H0YCH9 400 aa12.39□□□□□ -0.43
LIG1-218ENST00000599322 RPL36A-HNRNPH2H7BZ11 118 aa12.39□□□□□ -0.43
LIG1-218ENST00000599322 M0R3G1 203 aa12.39□□□□□ -0.43
LIG1-218ENST00000599322 CXCR6O00574 342 aa12.39□□□□□ -0.43
LIG1-218ENST00000599322 SNX3O60493 162 aa12.39□□□□□ -0.43
LIG1-218ENST00000599322 DCTN3O75935 186 aa12.39□□□□□ -0.43
LIG1-218ENST00000599322 CRYAAP02489 173 aa12.39□□□□□ -0.43
LIG1-218ENST00000599322 FABP6P51161 128 aa12.39□□□□□ -0.43
LIG1-218ENST00000599322 FOXG1P55316 489 aaPredicted RBP12.39□□□□□ -0.43
LIG1-218ENST00000599322 CHRNB3Q05901 458 aa12.39□□□□□ -0.43
LIG1-218ENST00000599322 ETFDHQ16134 617 aa12.39□□□□□ -0.43
LIG1-218ENST00000599322 ZNF74Q16587 644 aa12.39□□□□□ -0.43
LIG1-218ENST00000599322 CEACAM16Q2WEN9 425 aa12.39□□□□□ -0.43
LIG1-218ENST00000599322 MS4A18Q3C1V0 323 aa12.39□□□□□ -0.43
LIG1-218ENST00000599322 HIKESHIQ53FT3 197 aa12.39□□□□□ -0.43
LIG1-218ENST00000599322 RRM2BQ7LG56 351 aa12.39□□□□□ -0.43
LIG1-218ENST00000599322 CDK20Q8IZL9 346 aa12.39□□□□□ -0.43
LIG1-218ENST00000599322 WDR31Q8NA23 367 aa12.39□□□□□ -0.43
LIG1-218ENST00000599322 WFDC11Q8NEX6 87 aa12.39□□□□□ -0.43
LIG1-218ENST00000599322 NANOS1Q8WY41 292 aaKnown RBP12.39□□□□□ -0.43
LIG1-218ENST00000599322 SGTBQ96EQ0 304 aa12.39□□□□□ -0.43
LIG1-218ENST00000599322 MOGAT1Q96PD6 335 aa12.39□□□□□ -0.43
LIG1-218ENST00000599322 OR2M2Q96R28 347 aa12.39□□□□□ -0.43
LIG1-218ENST00000599322 DHRS9Q9BPW9 319 aa12.39□□□□□ -0.43
LIG1-218ENST00000599322 ULBP2Q9BZM5 246 aa12.39□□□□□ -0.43
LIG1-218ENST00000599322 GSX1Q9H4S2 264 aaPredicted RBP12.39□□□□□ -0.43
LIG1-218ENST00000599322 BARX1Q9HBU1 254 aaPredicted RBP12.39□□□□□ -0.43
LIG1-218ENST00000599322 CRLF2Q9HC73 371 aa12.39□□□□□ -0.43
LIG1-218ENST00000599322 GPR35Q9HC97 309 aa12.39□□□□□ -0.43
LIG1-218ENST00000599322 DLL4Q9NR61 685 aa12.39□□□□□ -0.43
LIG1-218ENST00000599322 CMTM6Q9NX76 183 aa12.39□□□□□ -0.43
LIG1-218ENST00000599322 ADA2Q9NZK5 511 aa12.39□□□□□ -0.43
LIG1-218ENST00000599322 NPAP1Q9NZP6 1156 aa12.39□□□□□ -0.43
LIG1-218ENST00000599322 B3GAT1Q9P2W7 334 aa12.39□□□□□ -0.43
LIG1-218ENST00000599322 STX18Q9P2W9 335 aaKnown RBP12.39□□□□□ -0.43
LIG1-218ENST00000599322 RPS6KA6Q9UK32 745 aa12.39□□□□□ -0.43
LIG1-218ENST00000599322 A0A096LPE4 126 aa12.38□□□□□ -0.43
LIG1-218ENST00000599322 A0A1W2PPZ6 126 aa12.38□□□□□ -0.43
LIG1-218ENST00000599322 A0A1W2PRG6 482 aa12.38□□□□□ -0.43
LIG1-218ENST00000599322 SLC35F4A4IF30 521 aa12.38□□□□□ -0.43
LIG1-218ENST00000599322 MCIDASD6RGH6 385 aa12.38□□□□□ -0.43
LIG1-218ENST00000599322 BLOC1S5-TXNDC5H3BN57 136 aa12.38□□□□□ -0.43
LIG1-218ENST00000599322 TRAF3IP2O43734 574 aaPredicted RBP12.38□□□□□ -0.43
LIG1-218ENST00000599322 ZNF432O94892 652 aa12.38□□□□□ -0.43
LIG1-218ENST00000599322 BCL10O95999 233 aa12.38□□□□□ -0.43
LIG1-218ENST00000599322 MT-ND1P03886 318 aa12.38□□□□□ -0.43
LIG1-218ENST00000599322 OR1E2P47887 323 aa12.38□□□□□ -0.43
LIG1-218ENST00000599322 CSNK1A1P48729 337 aa12.38□□□□□ -0.43
LIG1-218ENST00000599322 PSME3P61289 254 aa12.38□□□□□ -0.43
LIG1-218ENST00000599322 ARF1P84077 181 aaKnown RBP12.38□□□□□ -0.43
LIG1-218ENST00000599322 LTBQ06643 244 aa12.38□□□□□ -0.43
LIG1-218ENST00000599322 ZP4Q12836 540 aa12.38□□□□□ -0.43
LIG1-218ENST00000599322 IFI44LQ53G44 452 aa12.38□□□□□ -0.43
LIG1-218ENST00000599322 ZNF544Q6NX49 715 aa12.38□□□□□ -0.43
LIG1-218ENST00000599322 SLC35D2Q76EJ3 337 aa12.38□□□□□ -0.43
LIG1-218ENST00000599322 C20orf196Q8IYI0 205 aa12.38□□□□□ -0.43
LIG1-218ENST00000599322 OR4D11Q8NGI4 311 aa12.38□□□□□ -0.43
LIG1-218ENST00000599322 TMEM239Q8WW34 195 aa12.38□□□□□ -0.43
LIG1-218ENST00000599322 GEMIN6Q8WXD5 167 aaKnown RBP12.38□□□□□ -0.43
LIG1-218ENST00000599322 BCL2L2Q92843 193 aaPredicted RBP12.38□□□□□ -0.43
LIG1-218ENST00000599322 BOD1Q96IK1 185 aa12.38□□□□□ -0.43
LIG1-218ENST00000599322 C18orf12Q96KH6 178 aa12.38□□□□□ -0.43
LIG1-218ENST00000599322 LRRC37BQ96QE4 947 aa12.38□□□□□ -0.43
LIG1-218ENST00000599322 EMC6Q9BV81 110 aa12.38□□□□□ -0.43
LIG1-218ENST00000599322 FNDC11Q9BVV2 318 aa12.38□□□□□ -0.43
LIG1-218ENST00000599322 NDEL1Q9GZM8 345 aa12.38□□□□□ -0.43
LIG1-218ENST00000599322 SPAG4Q9NPE6 437 aa12.38□□□□□ -0.43
LIG1-218ENST00000599322 ZNF701Q9NV72 531 aaPredicted RBP12.38□□□□□ -0.43
LIG1-218ENST00000599322 NDE1Q9NXR1 346 aa12.38□□□□□ -0.43
LIG1-218ENST00000599322 USP22Q9UPT9 525 aa12.38□□□□□ -0.43
LIG1-218ENST00000599322 ARL2BPQ9Y2Y0 163 aa12.38□□□□□ -0.43
LIG1-218ENST00000599322 FAM32AQ9Y421 112 aaKnown RBP12.38□□□□□ -0.43
LIG1-218ENST00000599322 PMF1-BGLAPU3KQ54 211 aa12.38□□□□□ -0.43
LIG1-218ENST00000599322 DSCAMO60469 2012 aa12.38□□□□□ -0.43
LIG1-218ENST00000599322 ARPC4-TTLL3A0A0A6YYG9 625 aa12.37□□□□□ -0.43
LIG1-218ENST00000599322 ZNF99A8MXY4 864 aaPredicted RBP12.37□□□□□ -0.43
LIG1-218ENST00000599322 SHISA9B4DS77 424 aa12.37□□□□□ -0.43
LIG1-218ENST00000599322 LRRN3E7EW58 273 aa12.37□□□□□ -0.43
LIG1-218ENST00000599322 SHOX2O60902 331 aaPredicted RBP12.37□□□□□ -0.43
LIG1-218ENST00000599322 NR2C1P13056 603 aa12.37□□□□□ -0.43
LIG1-218ENST00000599322 IFNGR1P15260 489 aa12.37□□□□□ -0.43
LIG1-218ENST00000599322 PAX1P15863 534 aa12.37□□□□□ -0.43
LIG1-218ENST00000599322 FUT1P19526 365 aa12.37□□□□□ -0.43
LIG1-218ENST00000599322 TNFRSF1BP20333 461 aa12.37□□□□□ -0.43
LIG1-218ENST00000599322 DRD4P21917 467 aa12.37□□□□□ -0.43
LIG1-218ENST00000599322 ARR3P36575 388 aa12.37□□□□□ -0.43
LIG1-218ENST00000599322 GSK3BP49841 420 aa12.37□□□□□ -0.43
LIG1-218ENST00000599322 MNAT1P51948 309 aa12.37□□□□□ -0.43
LIG1-218ENST00000599322 BIDP55957 195 aa12.37□□□□□ -0.43
LIG1-218ENST00000599322 MXRA7P84157 204 aa12.37□□□□□ -0.43
LIG1-218ENST00000599322 PIN1Q13526 163 aaPredicted RBP12.37□□□□□ -0.43
LIG1-218ENST00000599322 CAMK2DQ13557 499 aa12.37□□□□□ -0.43
LIG1-218ENST00000599322 TAF11Q15544 211 aa12.37□□□□□ -0.43
LIG1-218ENST00000599322 C3orf36Q3SXR2 165 aa12.37□□□□□ -0.43
LIG1-218ENST00000599322 SEZ6L2Q6UXD5 910 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms