RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 RBM45Q8IUH3 476 aaKnown RBP15.52■□□□□ 0.08
SHKBP1-204ENST00000594862 FBXL14Q8N1E6 418 aa15.52■□□□□ 0.08
SHKBP1-204ENST00000594862 OR4D11Q8NGI4 311 aa15.52■□□□□ 0.08
SHKBP1-204ENST00000594862 BCL2L2Q92843 193 aaPredicted RBP15.52■□□□□ 0.08
SHKBP1-204ENST00000594862 HIST1H2ACQ93077 130 aa15.52■□□□□ 0.08
SHKBP1-204ENST00000594862 Q96MF0 132 aa15.52■□□□□ 0.08
SHKBP1-204ENST00000594862 HS6ST2Q96MM7 605 aa15.52■□□□□ 0.08
SHKBP1-204ENST00000594862 TRAF4Q9BUZ4 470 aaPredicted RBP15.52■□□□□ 0.08
SHKBP1-204ENST00000594862 GPR35Q9HC97 309 aa15.52■□□□□ 0.08
SHKBP1-204ENST00000594862 PRR14LQ5THK1 2151 aa15.52■□□□□ 0.07
SHKBP1-204ENST00000594862 ROS1P08922 2347 aa15.51■□□□□ 0.07
SHKBP1-204ENST00000594862 LYPD3O95274 346 aa15.51■□□□□ 0.07
SHKBP1-204ENST00000594862 PRDX6P30041 224 aa15.51■□□□□ 0.07
SHKBP1-204ENST00000594862 SLC25A3Q00325 362 aa15.51■□□□□ 0.07
SHKBP1-204ENST00000594862 LTBQ06643 244 aa15.51■□□□□ 0.07
SHKBP1-204ENST00000594862 ZP4Q12836 540 aa15.51■□□□□ 0.07
SHKBP1-204ENST00000594862 PGGHGQ32M88 737 aa15.51■□□□□ 0.07
SHKBP1-204ENST00000594862 DEF8Q6ZN54 512 aa15.51■□□□□ 0.07
SHKBP1-204ENST00000594862 HDDC2Q7Z4H3 204 aa15.51■□□□□ 0.07
SHKBP1-204ENST00000594862 LSRQ86X29 649 aaPredicted RBP15.51■□□□□ 0.07
SHKBP1-204ENST00000594862 NEUROG1Q92886 237 aa15.51■□□□□ 0.07
SHKBP1-204ENST00000594862 SLC38A2Q96QD8 506 aa15.51■□□□□ 0.07
SHKBP1-204ENST00000594862 ELAC2Q9BQ52 826 aaKnown RBP15.51■□□□□ 0.07
SHKBP1-204ENST00000594862 KATNB1Q9BVA0 655 aa15.51■□□□□ 0.07
SHKBP1-204ENST00000594862 CRLF2Q9HC73 371 aa15.51■□□□□ 0.07
SHKBP1-204ENST00000594862 ARID1AO14497 2285 aa15.51■□□□□ 0.07
SHKBP1-204ENST00000594862 ZNF99A8MXY4 864 aaPredicted RBP15.5■□□□□ 0.07
SHKBP1-204ENST00000594862 CH25HO95992 272 aa15.5■□□□□ 0.07
SHKBP1-204ENST00000594862 HPRP00739 348 aa15.5■□□□□ 0.07
SHKBP1-204ENST00000594862 CRYAAP02489 173 aa15.5■□□□□ 0.07
SHKBP1-204ENST00000594862 INHBBP09529 407 aa15.5■□□□□ 0.07
SHKBP1-204ENST00000594862 UMPSP11172 480 aa15.5■□□□□ 0.07
SHKBP1-204ENST00000594862 TTKP33981 857 aa15.5■□□□□ 0.07
SHKBP1-204ENST00000594862 NUDT2P50583 147 aa15.5■□□□□ 0.07
SHKBP1-204ENST00000594862 SELENOWP63302 87 aa15.5■□□□□ 0.07
SHKBP1-204ENST00000594862 LIPEQ05469 1076 aa15.5■□□□□ 0.07
SHKBP1-204ENST00000594862 LGALS3BPQ08380 585 aa15.5■□□□□ 0.07
SHKBP1-204ENST00000594862 CEACAM16Q2WEN9 425 aa15.5■□□□□ 0.07
SHKBP1-204ENST00000594862 WDR88Q6ZMY6 472 aa15.5■□□□□ 0.07
SHKBP1-204ENST00000594862 LINGO2Q7L985 606 aa15.5■□□□□ 0.07
SHKBP1-204ENST00000594862 NANOGNBQ7Z5D8 188 aa15.5■□□□□ 0.07
SHKBP1-204ENST00000594862 CPLX4Q7Z7G2 160 aa15.5■□□□□ 0.07
SHKBP1-204ENST00000594862 SLC15A3Q8IY34 581 aa15.5■□□□□ 0.07
SHKBP1-204ENST00000594862 C20orf196Q8IYI0 205 aa15.5■□□□□ 0.07
SHKBP1-204ENST00000594862 OR6N1Q8NGY5 312 aa15.5■□□□□ 0.07
SHKBP1-204ENST00000594862 COX4I2Q96KJ9 171 aa15.5■□□□□ 0.07
SHKBP1-204ENST00000594862 C1QTNF6Q9BXI9 259 aa15.5■□□□□ 0.07
SHKBP1-204ENST00000594862 CBLN4Q9NTU7 201 aa15.5■□□□□ 0.07
SHKBP1-204ENST00000594862 CMTM6Q9NX76 183 aa15.5■□□□□ 0.07
SHKBP1-204ENST00000594862 CRNNQ9UBG3 495 aaPredicted RBP15.5■□□□□ 0.07
SHKBP1-204ENST00000594862 RIMS3Q9UJD0 308 aa15.5■□□□□ 0.07
SHKBP1-204ENST00000594862 FLNAP21333 2647 aaKnown RBP15.5■□□□□ 0.07
SHKBP1-204ENST00000594862 SLC35F4A4IF30 521 aa15.49■□□□□ 0.07
SHKBP1-204ENST00000594862 KPNA4O00629 521 aaPredicted RBP15.49■□□□□ 0.07
SHKBP1-204ENST00000594862 GSTA4O15217 222 aa15.49■□□□□ 0.07
SHKBP1-204ENST00000594862 MT-ND1P03886 318 aa15.49■□□□□ 0.07
SHKBP1-204ENST00000594862 THY1P04216 161 aa15.49■□□□□ 0.07
SHKBP1-204ENST00000594862 LSP1P33241 339 aa15.49■□□□□ 0.07
SHKBP1-204ENST00000594862 SLC7A2P52569 658 aa15.49■□□□□ 0.07
SHKBP1-204ENST00000594862 ARF1P84077 181 aaKnown RBP15.49■□□□□ 0.07
SHKBP1-204ENST00000594862 SPOCK1Q08629 439 aa15.49■□□□□ 0.07
SHKBP1-204ENST00000594862 ST3GAL3Q11203 375 aa15.49■□□□□ 0.07
SHKBP1-204ENST00000594862 MUC15Q8N387 334 aa15.49■□□□□ 0.07
SHKBP1-204ENST00000594862 NANOS1Q8WY41 292 aaKnown RBP15.49■□□□□ 0.07
SHKBP1-204ENST00000594862 TPD52L3Q96J77 140 aa15.49■□□□□ 0.07
SHKBP1-204ENST00000594862 PRRC1Q96M27 445 aa15.49■□□□□ 0.07
SHKBP1-204ENST00000594862 PRSS27Q9BQR3 290 aa15.49■□□□□ 0.07
SHKBP1-204ENST00000594862 ULBP2Q9BZM5 246 aa15.49■□□□□ 0.07
SHKBP1-204ENST00000594862 MYLK2Q9H1R3 596 aa15.49■□□□□ 0.07
SHKBP1-204ENST00000594862 STX18Q9P2W9 335 aaKnown RBP15.49■□□□□ 0.07
SHKBP1-204ENST00000594862 USP22Q9UPT9 525 aa15.49■□□□□ 0.07
SHKBP1-204ENST00000594862 MED31Q9Y3C7 131 aa15.49■□□□□ 0.07
SHKBP1-204ENST00000594862 ATP23Q9Y6H3 246 aa15.49■□□□□ 0.07
SHKBP1-204ENST00000594862 GMNCA6NCL1 334 aa15.48■□□□□ 0.07
SHKBP1-204ENST00000594862 E7EQL1 145 aa15.48■□□□□ 0.07
SHKBP1-204ENST00000594862 LRRN3E7EW58 273 aa15.48■□□□□ 0.07
SHKBP1-204ENST00000594862 M0R3G1 203 aa15.48■□□□□ 0.07
SHKBP1-204ENST00000594862 RNF13O43567 381 aa15.48■□□□□ 0.07
SHKBP1-204ENST00000594862 SNX3O60493 162 aa15.48■□□□□ 0.07
SHKBP1-204ENST00000594862 IFNW1P05000 195 aa15.48■□□□□ 0.07
SHKBP1-204ENST00000594862 ASAH2BP0C7U1 165 aa15.48■□□□□ 0.07
SHKBP1-204ENST00000594862 HLA-DOBP13765 273 aa15.48■□□□□ 0.07
SHKBP1-204ENST00000594862 PTNP21246 168 aa15.48■□□□□ 0.07
SHKBP1-204ENST00000594862 ARR3P36575 388 aa15.48■□□□□ 0.07
SHKBP1-204ENST00000594862 CSNK1A1P48729 337 aa15.48■□□□□ 0.07
SHKBP1-204ENST00000594862 FABP6P51161 128 aa15.48■□□□□ 0.07
SHKBP1-204ENST00000594862 CHRNB3Q05901 458 aa15.48■□□□□ 0.07
SHKBP1-204ENST00000594862 C8orf82Q6P1X6 216 aaPredicted RBP15.48■□□□□ 0.07
SHKBP1-204ENST00000594862 SLC35D2Q76EJ3 337 aa15.48■□□□□ 0.07
SHKBP1-204ENST00000594862 ZNF627Q7L945 461 aa15.48■□□□□ 0.07
SHKBP1-204ENST00000594862 IL17RDQ8NFM7 739 aa15.48■□□□□ 0.07
SHKBP1-204ENST00000594862 OR6X1Q8NH79 312 aa15.48■□□□□ 0.07
SHKBP1-204ENST00000594862 TMEM239Q8WW34 195 aa15.48■□□□□ 0.07
SHKBP1-204ENST00000594862 GEMIN6Q8WXD5 167 aaKnown RBP15.48■□□□□ 0.07
SHKBP1-204ENST00000594862 FAM107BQ9H098 131 aa15.48■□□□□ 0.07
SHKBP1-204ENST00000594862 NELFAQ9H3P2 528 aa15.48■□□□□ 0.07
SHKBP1-204ENST00000594862 MED29Q9NX70 200 aa15.48■□□□□ 0.07
SHKBP1-204ENST00000594862 FBXO9Q9UK97 447 aaPredicted RBP15.48■□□□□ 0.07
SHKBP1-204ENST00000594862 FBXL3Q9UKT7 428 aa15.48■□□□□ 0.07
SHKBP1-204ENST00000594862 POFUT2Q9Y2G5 429 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms