RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 GALNT9Q9HCQ5 603 aa8.98□□□□□ -0.97
LIG3-216ENST00000593099 C5orf51A6NDU8 294 aa8.98□□□□□ -0.97
LIG3-216ENST00000593099 FAM183AA6NL82 134 aa8.98□□□□□ -0.97
LIG3-216ENST00000593099 MT-ND2P03891 347 aa8.98□□□□□ -0.97
LIG3-216ENST00000593099 ARL3P36405 182 aa8.98□□□□□ -0.97
LIG3-216ENST00000593099 WNT3P56703 355 aa8.98□□□□□ -0.97
LIG3-216ENST00000593099 FOXF1Q12946 379 aa8.98□□□□□ -0.97
LIG3-216ENST00000593099 WIPI1Q5MNZ9 446 aaPredicted RBP8.98□□□□□ -0.97
LIG3-216ENST00000593099 NKAIN4Q8IVV8 208 aa8.98□□□□□ -0.97
LIG3-216ENST00000593099 MAML2Q8IZL2 1156 aaPredicted RBP8.98□□□□□ -0.97
LIG3-216ENST00000593099 TMEM163Q8TC26 289 aa8.98□□□□□ -0.97
LIG3-216ENST00000593099 RASL10BQ96S79 203 aa8.98□□□□□ -0.97
LIG3-216ENST00000593099 SLC19A3Q9BZV2 496 aa8.98□□□□□ -0.97
LIG3-216ENST00000593099 MED17Q9NVC6 651 aa8.98□□□□□ -0.97
LIG3-216ENST00000593099 PEX16Q9Y5Y5 336 aa8.98□□□□□ -0.97
LIG3-216ENST00000593099 ASCC3Q8N3C0 2202 aaKnown RBP8.98□□□□□ -0.97
LIG3-216ENST00000593099 PRAMEF27A3QJZ7 478 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 SLC22A20A6NK97 555 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 CLDN24A6NM45 220 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 ZNF814B7Z6K7 855 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 FXYD1O00168 92 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 SYT7O43581 403 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 MRPL19P49406 292 aaKnown RBP8.97□□□□□ -0.97
LIG3-216ENST00000593099 FGFBP1Q14512 234 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 SEC23BQ15437 767 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 BATFQ16520 125 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 ZNF791Q3KP31 576 aaPredicted RBP8.97□□□□□ -0.97
LIG3-216ENST00000593099 OR4C3Q8NH37 302 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 TM4SF19Q96DZ7 209 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 ERVK-18Q9QC07 812 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 COMMD3Q9UBI1 195 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 MOKQ9UQ07 419 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 ANK1P16157 1881 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 IGKV1-8A0A0C4DH67 115 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 A0A1W2PPW3 197 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 ACOT8O14734 319 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 PAHP00439 452 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 CT62P0C5K7 136 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 CHMP24386 653 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 CD40LGP29965 261 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 HTR5AP47898 357 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 EMDP50402 254 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 TSPAN5P62079 268 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 GRK1Q15835 563 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 Q3ZCU0 254 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 OR2A2Q6IF42 318 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 C16orf47Q6ZP98 133 aaPredicted RBP8.97□□□□□ -0.97
LIG3-216ENST00000593099 MEPCEQ7L2J0 689 aaKnown RBP8.97□□□□□ -0.97
LIG3-216ENST00000593099 ZNF627Q7L945 461 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 PTOV1Q86YD1 416 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 OR13C3Q8NGS6 347 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 MGLLQ99685 303 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 GPATCH2Q9NW75 528 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 KCNE3Q9Y6H6 103 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 PDCD11Q14690 1871 aaKnown RBP8.97□□□□□ -0.97
LIG3-216ENST00000593099 OR14I1A6ND48 311 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 ALG1L2C9J202 215 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 NPIPB8E9PQR5 432 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 BOLA2-SMG1P6H3BVE0 249 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 SLC1A7O00341 560 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 DVL2O14641 736 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 SLC22A1O15245 554 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 GMDSO60547 372 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 SCGNO76038 276 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 CNR1P21554 472 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 POU3F4P49335 361 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 HNRNPFP52597 415 aaKnown RBP8.97□□□□□ -0.97
LIG3-216ENST00000593099 KDM8Q8N371 416 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 BOLLQ8N9W6 283 aaKnown RBP8.97□□□□□ -0.97
LIG3-216ENST00000593099 TMEM41AQ96HV5 264 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 GNRHR2Q96P88 292 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 FKRPQ9H9S5 495 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 MMP25Q9NPA2 562 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 RNF6Q9Y252 685 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 B3GALT5Q9Y2C3 310 aa8.97□□□□□ -0.97
LIG3-216ENST00000593099 CDHR4A6H8M9 788 aa8.96□□□□□ -0.97
LIG3-216ENST00000593099 CLCA1A8K7I4 914 aa8.96□□□□□ -0.97
LIG3-216ENST00000593099 OR3A3P47888 321 aa8.96□□□□□ -0.97
LIG3-216ENST00000593099 OR3A2P47893 321 aa8.96□□□□□ -0.97
LIG3-216ENST00000593099 C21orf58P58505 322 aa8.96□□□□□ -0.97
LIG3-216ENST00000593099 MZT1Q08AG7 82 aa8.96□□□□□ -0.97
LIG3-216ENST00000593099 ECH1Q13011 328 aa8.96□□□□□ -0.97
LIG3-216ENST00000593099 RNASE12Q5GAN4 147 aaKnown RBP8.96□□□□□ -0.97
LIG3-216ENST00000593099 C1QTNF12Q5T7M4 302 aa8.96□□□□□ -0.97
LIG3-216ENST00000593099 FAM219BQ5XKK7 198 aa8.96□□□□□ -0.97
LIG3-216ENST00000593099 ZNF322Q6U7Q0 402 aaPredicted RBP8.96□□□□□ -0.97
LIG3-216ENST00000593099 SLC7A13Q8TCU3 470 aa8.96□□□□□ -0.97
LIG3-216ENST00000593099 STK35Q8TDR2 534 aa8.96□□□□□ -0.97
LIG3-216ENST00000593099 UTP4Q969X6 686 aaKnown RBP8.96□□□□□ -0.97
LIG3-216ENST00000593099 LRFN5Q96NI6 719 aa8.96□□□□□ -0.97
LIG3-216ENST00000593099 FOXN4Q96NZ1 517 aa8.96□□□□□ -0.97
LIG3-216ENST00000593099 OR51B6Q9H340 312 aa8.96□□□□□ -0.97
LIG3-216ENST00000593099 ANKRD30BLA7E2S9 258 aa8.96□□□□□ -0.97
LIG3-216ENST00000593099 H7C1C5 153 aa8.96□□□□□ -0.97
LIG3-216ENST00000593099 M0R036 132 aa8.96□□□□□ -0.97
LIG3-216ENST00000593099 PLATP00750 562 aa8.96□□□□□ -0.97
LIG3-216ENST00000593099 THBS2P35442 1172 aa8.96□□□□□ -0.97
LIG3-216ENST00000593099 LCN6P62502 163 aa8.96□□□□□ -0.97
LIG3-216ENST00000593099 HSF1Q00613 529 aa8.96□□□□□ -0.97
LIG3-216ENST00000593099 INSM1Q01101 510 aaPredicted RBP8.96□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms