RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 CDK20Q8IZL9 346 aa11.94□□□□□ -0.5
CLK3-218ENST00000566926 CADM2Q8N3J6 435 aa11.94□□□□□ -0.5
CLK3-218ENST00000566926 SETD9Q8NE22 299 aa11.94□□□□□ -0.5
CLK3-218ENST00000566926 TMEM239Q8WW34 195 aa11.94□□□□□ -0.5
CLK3-218ENST00000566926 NR1H4Q96RI1 486 aaPredicted RBP11.94□□□□□ -0.5
CLK3-218ENST00000566926 NAA11Q9BSU3 229 aaPredicted RBP11.94□□□□□ -0.5
CLK3-218ENST00000566926 POLDIP3Q9BY77 421 aaKnown RBP11.94□□□□□ -0.5
CLK3-218ENST00000566926 POTEKPQ9BYX7 375 aa11.94□□□□□ -0.5
CLK3-218ENST00000566926 TOR3AQ9H497 397 aa11.94□□□□□ -0.5
CLK3-218ENST00000566926 C12orf49Q9H741 205 aa11.94□□□□□ -0.5
CLK3-218ENST00000566926 BCO1Q9HAY6 547 aa11.94□□□□□ -0.5
CLK3-218ENST00000566926 RASSF1Q9NS23 344 aa11.94□□□□□ -0.5
CLK3-218ENST00000566926 ZNF226Q9NYT6 803 aa11.94□□□□□ -0.5
CLK3-218ENST00000566926 EMC3Q9P0I2 261 aa11.94□□□□□ -0.5
CLK3-218ENST00000566926 MED31Q9Y3C7 131 aa11.94□□□□□ -0.5
CLK3-218ENST00000566926 HSPE1-MOB4S4R3N1 261 aa11.94□□□□□ -0.5
CLK3-218ENST00000566926 TACC2O95359 2948 aa11.93□□□□□ -0.5
CLK3-218ENST00000566926 A0A087WUJ7 227 aa11.93□□□□□ -0.5
CLK3-218ENST00000566926 A0A087WUU8 490 aa11.93□□□□□ -0.5
CLK3-218ENST00000566926 IGHV3-15A0A0B4J1V0 119 aa11.93□□□□□ -0.5
CLK3-218ENST00000566926 TMEM72A0PK05 275 aa11.93□□□□□ -0.5
CLK3-218ENST00000566926 FAM221AA4D161 298 aa11.93□□□□□ -0.5
CLK3-218ENST00000566926 ENO4A6NNW6 628 aa11.93□□□□□ -0.5
CLK3-218ENST00000566926 ZNF724A8MTY0 619 aa11.93□□□□□ -0.5
CLK3-218ENST00000566926 GPR171O14626 319 aa11.93□□□□□ -0.5
CLK3-218ENST00000566926 SMAD9O15198 467 aaKnown RBP11.93□□□□□ -0.5
CLK3-218ENST00000566926 PPP3CBP16298 524 aa11.93□□□□□ -0.5
CLK3-218ENST00000566926 CCNA2P20248 432 aa11.93□□□□□ -0.5
CLK3-218ENST00000566926 UGT2B10P36537 528 aa11.93□□□□□ -0.5
CLK3-218ENST00000566926 OR2B6P58173 313 aa11.93□□□□□ -0.5
CLK3-218ENST00000566926 ADARB1P78563 741 aaKnown RBP11.93□□□□□ -0.5
CLK3-218ENST00000566926 TSPAN31Q12999 210 aa11.93□□□□□ -0.5
CLK3-218ENST00000566926 LAPTM4AQ15012 233 aa11.93□□□□□ -0.5
CLK3-218ENST00000566926 PDK3Q15120 406 aa11.93□□□□□ -0.5
CLK3-218ENST00000566926 RPL13AP3Q6NVV1 102 aa11.93□□□□□ -0.5
CLK3-218ENST00000566926 LINC00114Q6XXX2 140 aa11.93□□□□□ -0.5
CLK3-218ENST00000566926 OR9Q2Q8NGE9 314 aa11.93□□□□□ -0.5
CLK3-218ENST00000566926 GNPDA2Q8TDQ7 276 aa11.93□□□□□ -0.5
CLK3-218ENST00000566926 CYGBQ8WWM9 190 aa11.93□□□□□ -0.5
CLK3-218ENST00000566926 ARL5BQ96KC2 179 aa11.93□□□□□ -0.5
CLK3-218ENST00000566926 APOL4Q9BPW4 351 aa11.93□□□□□ -0.5
CLK3-218ENST00000566926 PRSS27Q9BQR3 290 aa11.93□□□□□ -0.5
CLK3-218ENST00000566926 TMEM43Q9BTV4 400 aa11.93□□□□□ -0.5
CLK3-218ENST00000566926 MED18Q9BUE0 208 aa11.93□□□□□ -0.5
CLK3-218ENST00000566926 HDHD5Q9BXW7 423 aa11.93□□□□□ -0.5
CLK3-218ENST00000566926 GRIP2Q9C0E4 1043 aa11.93□□□□□ -0.5
CLK3-218ENST00000566926 OR10A4Q9H209 315 aa11.93□□□□□ -0.5
CLK3-218ENST00000566926 FAM118AQ9NWS6 357 aa11.93□□□□□ -0.5
CLK3-218ENST00000566926 LOC100130705A0A1B0GUX0 176 aa11.92□□□□□ -0.5
CLK3-218ENST00000566926 ELOA3DA6NLF2 546 aaPredicted RBP11.92□□□□□ -0.5
CLK3-218ENST00000566926 A8MVM7 634 aa11.92□□□□□ -0.5
CLK3-218ENST00000566926 LYPD3O95274 346 aa11.92□□□□□ -0.5
CLK3-218ENST00000566926 GASTP01350 101 aa11.92□□□□□ -0.5
CLK3-218ENST00000566926 THY1P04216 161 aa11.92□□□□□ -0.5
CLK3-218ENST00000566926 OSMP13725 252 aa11.92□□□□□ -0.5
CLK3-218ENST00000566926 MYF6P23409 242 aa11.92□□□□□ -0.5
CLK3-218ENST00000566926 IDUAP35475 653 aa11.92□□□□□ -0.5
CLK3-218ENST00000566926 KRTAP10-9P60411 292 aa11.92□□□□□ -0.5
CLK3-218ENST00000566926 PRKCDQ05655 676 aa11.92□□□□□ -0.5
CLK3-218ENST00000566926 NPRL3Q12980 569 aa11.92□□□□□ -0.5
CLK3-218ENST00000566926 ELOA3BQ3SY89 546 aa11.92□□□□□ -0.5
CLK3-218ENST00000566926 C6orf52Q5T4I8 152 aa11.92□□□□□ -0.5
CLK3-218ENST00000566926 KRT80Q6KB66 452 aa11.92□□□□□ -0.5
CLK3-218ENST00000566926 TTC33Q6PID6 262 aaPredicted RBP11.92□□□□□ -0.5
CLK3-218ENST00000566926 GALNT5Q7Z7M9 940 aa11.92□□□□□ -0.5
CLK3-218ENST00000566926 NRMQ8IXM6 262 aa11.92□□□□□ -0.5
CLK3-218ENST00000566926 CLDN22Q8N7P3 220 aa11.92□□□□□ -0.5
CLK3-218ENST00000566926 ELOA3Q8NG57 546 aa11.92□□□□□ -0.5
CLK3-218ENST00000566926 C3orf49Q96BT1 292 aa11.92□□□□□ -0.5
CLK3-218ENST00000566926 USB1Q9BQ65 265 aaKnown RBP11.92□□□□□ -0.5
CLK3-218ENST00000566926 PRR14Q9BWN1 585 aa11.92□□□□□ -0.5
CLK3-218ENST00000566926 TAPBPLQ9BX59 468 aa11.92□□□□□ -0.5
CLK3-218ENST00000566926 TEX12Q9BXU0 123 aa11.92□□□□□ -0.5
CLK3-218ENST00000566926 OR11A1Q9GZK7 315 aa11.92□□□□□ -0.5
CLK3-218ENST00000566926 CLEC4MQ9H2X3 399 aaPredicted RBP11.92□□□□□ -0.5
CLK3-218ENST00000566926 RIBC2Q9H4K1 309 aa11.92□□□□□ -0.5
CLK3-218ENST00000566926 GPR52Q9Y2T5 361 aa11.92□□□□□ -0.5
CLK3-218ENST00000566926 POLQO75417 2590 aa11.92□□□□□ -0.5
CLK3-218ENST00000566926 FBN2P35556 2912 aa11.92□□□□□ -0.5
CLK3-218ENST00000566926 MYO9AB2RTY4 2548 aa11.92□□□□□ -0.5
CLK3-218ENST00000566926 CCDC168Q8NDH2 2452 aa11.91□□□□□ -0.5
CLK3-218ENST00000566926 IGKV3D-15A0A087WSY6 115 aa11.91□□□□□ -0.5
CLK3-218ENST00000566926 OMPP47874 163 aa11.91□□□□□ -0.5
CLK3-218ENST00000566926 GSSP48637 474 aa11.91□□□□□ -0.5
CLK3-218ENST00000566926 IL1RL1Q01638 556 aa11.91□□□□□ -0.5
CLK3-218ENST00000566926 ABLIM2Q6H8Q1 611 aa11.91□□□□□ -0.5
CLK3-218ENST00000566926 TFAP2EQ6VUC0 442 aa11.91□□□□□ -0.5
CLK3-218ENST00000566926 TMPRSS11FQ6ZWK6 438 aa11.91□□□□□ -0.5
CLK3-218ENST00000566926 USP51Q70EK9 711 aa11.91□□□□□ -0.5
CLK3-218ENST00000566926 NUFIP2Q7Z417 695 aaKnown RBP11.91□□□□□ -0.5
CLK3-218ENST00000566926 ZER1Q7Z7L7 766 aa11.91□□□□□ -0.5
CLK3-218ENST00000566926 ATG4DQ86TL0 474 aaPredicted RBP11.91□□□□□ -0.5
CLK3-218ENST00000566926 CDH24Q86UP0 819 aa11.91□□□□□ -0.5
CLK3-218ENST00000566926 NKAIN4Q8IVV8 208 aa11.91□□□□□ -0.5
CLK3-218ENST00000566926 C8orf59Q8N0T1 100 aaPredicted RBP11.91□□□□□ -0.5
CLK3-218ENST00000566926 DEPDC4Q8N2C3 294 aa11.91□□□□□ -0.5
CLK3-218ENST00000566926 STEAP2Q8NFT2 490 aa11.91□□□□□ -0.5
CLK3-218ENST00000566926 RNF217Q8TC41 542 aa11.91□□□□□ -0.5
CLK3-218ENST00000566926 STK35Q8TDR2 534 aa11.91□□□□□ -0.5
CLK3-218ENST00000566926 TMEM255BQ8WV15 326 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms