RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 CSRP2Q16527 193 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 PCGF3Q3KNV8 242 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 ZNF776Q68DI1 518 aaPredicted RBP12.05□□□□□ -0.48
CLN3-210ENST00000563874 SPICQ8N5J4 248 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 OR51A4Q8NGJ6 313 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 OR4C3Q8NH37 302 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 SIPA1Q96FS4 1042 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 PPA2Q9H2U2 334 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 C12orf10Q9HB07 376 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 ZNF275Q9NSD4 429 aaPredicted RBP12.05□□□□□ -0.48
CLN3-210ENST00000563874 RXFP3Q9NSD7 469 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 KIF25Q9UIL4 384 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 SPTBN5Q9NRC6 3674 aaKnown RBP12.05□□□□□ -0.48
CLN3-210ENST00000563874 TRAV8-7A0A075B6U6 113 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 OR2M5A3KFT3 312 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 TRIM77I1YAP6 450 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 ACOT7O00154 380 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 GALR3O60755 368 aaPredicted RBP12.05□□□□□ -0.48
CLN3-210ENST00000563874 NDUFB6O95139 128 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 FCARP24071 287 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 NUP62P37198 522 aaPredicted RBP12.05□□□□□ -0.48
CLN3-210ENST00000563874 RAP2BP61225 183 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 GUCA2AQ02747 115 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 HLXQ14774 488 aaPredicted RBP12.05□□□□□ -0.48
CLN3-210ENST00000563874 LINC01590Q5TEZ4 76 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 GLB1L2Q8IW92 636 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 SLC35F3Q8IY50 421 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 CA13Q8N1Q1 262 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 OR6M1Q8NGM8 313 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 OR9A4Q8NGU2 314 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 HERVK_113Q902F9 699 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 CTHRC1Q96CG8 243 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 GPN1Q9HCN4 374 aaPredicted RBP12.05□□□□□ -0.48
CLN3-210ENST00000563874 LYRM4Q9HD34 91 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 FRRS1LQ9P0K9 344 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 ING1Q9UK53 422 aaPredicted RBP12.05□□□□□ -0.48
CLN3-210ENST00000563874 IKZF2Q9UKS7 526 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 MPDZO75970 2070 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 LINC01553A4QN01 128 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 MFSD2BA6NFX1 497 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 DCTN6O00399 190 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 F13BP05160 661 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 FBXO45P0C2W1 286 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 ZNF35P13682 527 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 CPN1P15169 458 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 EPHA4P54764 986 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 ERV3-1Q14264 604 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 OLFML2AQ68BL7 652 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 ZCCHC12Q6PEW1 402 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 LINC00114Q6XXX2 140 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 DPY19L2P2Q6ZN68 376 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 HDDC2Q7Z4H3 204 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 DND1Q8IYX4 353 aaKnown RBP12.05□□□□□ -0.48
CLN3-210ENST00000563874 RCBTB1Q8NDN9 531 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 OR5AK2Q8NH90 309 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 ADAD1Q96M93 576 aaKnown RBP12.05□□□□□ -0.48
CLN3-210ENST00000563874 CMTM3Q96MX0 182 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 KXD1Q9BQD3 176 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 MYO9BQ13459 2157 aa12.04□□□□□ -0.48
CLN3-210ENST00000563874 GPANK1O95872 356 aa12.04□□□□□ -0.48
CLN3-210ENST00000563874 CSTAP01040 98 aa12.04□□□□□ -0.48
CLN3-210ENST00000563874 APODP05090 189 aa12.04□□□□□ -0.48
CLN3-210ENST00000563874 SEC61A1P61619 476 aaKnown RBP12.04□□□□□ -0.48
CLN3-210ENST00000563874 DCAF12L2Q5VW00 463 aa12.04□□□□□ -0.48
CLN3-210ENST00000563874 OR4C16Q8NGL9 310 aa12.04□□□□□ -0.48
CLN3-210ENST00000563874 MIB2Q96AX9 1013 aa12.04□□□□□ -0.48
CLN3-210ENST00000563874 DMRTA2Q96SC8 542 aa12.04□□□□□ -0.48
CLN3-210ENST00000563874 GAL3ST1Q99999 423 aa12.04□□□□□ -0.48
CLN3-210ENST00000563874 CERS4Q9HA82 394 aa12.04□□□□□ -0.48
CLN3-210ENST00000563874 MRM2Q9UI43 246 aaKnown RBP12.04□□□□□ -0.48
CLN3-210ENST00000563874 ANXA2P2A6NMY6 339 aa12.04□□□□□ -0.48
CLN3-210ENST00000563874 GOSR2O14653 212 aa12.04□□□□□ -0.48
CLN3-210ENST00000563874 SMAD9O15198 467 aaKnown RBP12.04□□□□□ -0.48
CLN3-210ENST00000563874 PLRG1O43660 514 aaKnown RBP12.04□□□□□ -0.48
CLN3-210ENST00000563874 GMFGO60234 142 aa12.04□□□□□ -0.48
CLN3-210ENST00000563874 RAD1O60671 282 aa12.04□□□□□ -0.48
CLN3-210ENST00000563874 ANXA2P07355 339 aaKnown RBP12.04□□□□□ -0.48
CLN3-210ENST00000563874 RAB40ALP0C0E4 278 aa12.04□□□□□ -0.48
CLN3-210ENST00000563874 C4BPBP20851 252 aa12.04□□□□□ -0.48
CLN3-210ENST00000563874 S100A11P31949 105 aa12.04□□□□□ -0.48
CLN3-210ENST00000563874 CCR4P51679 360 aa12.04□□□□□ -0.48
CLN3-210ENST00000563874 EFNB2P52799 333 aa12.04□□□□□ -0.48
CLN3-210ENST00000563874 LTBQ06643 244 aa12.04□□□□□ -0.48
CLN3-210ENST00000563874 ILF3Q12906 894 aaKnown RBP eCLIP12.04□□□□□ -0.48
CLN3-210ENST00000563874 ZNHIT3Q15649 155 aaPredicted RBP12.04□□□□□ -0.48
CLN3-210ENST00000563874 Q499Y3 187 aa12.04□□□□□ -0.48
CLN3-210ENST00000563874 RGS7BPQ6MZT1 257 aaPredicted RBP12.04□□□□□ -0.48
CLN3-210ENST00000563874 KCTD20Q7Z5Y7 419 aa12.04□□□□□ -0.48
CLN3-210ENST00000563874 CSNK1A1LQ8N752 337 aa12.04□□□□□ -0.48
CLN3-210ENST00000563874 OR8S1Q8NH09 359 aa12.04□□□□□ -0.48
CLN3-210ENST00000563874 RAB40AQ8WXH6 277 aa12.04□□□□□ -0.48
CLN3-210ENST00000563874 DVL3Q92997 716 aaPredicted RBP12.04□□□□□ -0.48
CLN3-210ENST00000563874 NMNAT2Q9BZQ4 307 aa12.04□□□□□ -0.48
CLN3-210ENST00000563874 SLITRK2Q9H156 845 aa12.04□□□□□ -0.48
CLN3-210ENST00000563874 TTYH1Q9H313 450 aaPredicted RBP12.04□□□□□ -0.48
CLN3-210ENST00000563874 TMEM138Q9NPI0 162 aa12.04□□□□□ -0.48
CLN3-210ENST00000563874 FANCFQ9NPI8 374 aa12.04□□□□□ -0.48
CLN3-210ENST00000563874 GLCEO94923 617 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 OR2A4O95047 310 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 ZP3P21754 424 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms