RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 HNRNPRO43390 633 aaKnown RBP19.25■□□□□ 0.67
SNX1-210ENST00000560260 GASTP01350 101 aa19.25■□□□□ 0.67
SNX1-210ENST00000560260 IFNGR1P15260 489 aa19.25■□□□□ 0.67
SNX1-210ENST00000560260 GK3PQ14409 553 aa19.25■□□□□ 0.67
SNX1-210ENST00000560260 ZBED5Q49AG3 693 aa19.25■□□□□ 0.67
SNX1-210ENST00000560260 ALG10Q5BKT4 473 aa19.25■□□□□ 0.67
SNX1-210ENST00000560260 TSPO2Q5TGU0 170 aa19.25■□□□□ 0.67
SNX1-210ENST00000560260 ANKRD34AQ69YU3 496 aa19.25■□□□□ 0.67
SNX1-210ENST00000560260 NIPAL3Q6P499 406 aa19.25■□□□□ 0.67
SNX1-210ENST00000560260 THSD4Q6ZMP0 1018 aa19.25■□□□□ 0.67
SNX1-210ENST00000560260 TMEM123Q8N131 208 aa19.25■□□□□ 0.67
SNX1-210ENST00000560260 ANKK1Q8NFD2 765 aa19.25■□□□□ 0.67
SNX1-210ENST00000560260 GNPDA2Q8TDQ7 276 aa19.25■□□□□ 0.67
SNX1-210ENST00000560260 APH1AQ96BI3 265 aa19.25■□□□□ 0.67
SNX1-210ENST00000560260 PSMG3-AS1Q96PY0 264 aa19.25■□□□□ 0.67
SNX1-210ENST00000560260 OR2M2Q96R28 347 aa19.25■□□□□ 0.67
SNX1-210ENST00000560260 EMC6Q9BV81 110 aa19.25■□□□□ 0.67
SNX1-210ENST00000560260 RBM24Q9BX46 236 aaKnown RBP19.25■□□□□ 0.67
SNX1-210ENST00000560260 INIPQ9NRY2 104 aa19.25■□□□□ 0.67
SNX1-210ENST00000560260 RCE1Q9Y256 329 aa19.25■□□□□ 0.67
SNX1-210ENST00000560260 USP9YO00507 2555 aaPredicted RBP19.25■□□□□ 0.67
SNX1-210ENST00000560260 MCIDASD6RGH6 385 aa19.25■□□□□ 0.67
SNX1-210ENST00000560260 E2F6O75461 281 aa19.25■□□□□ 0.67
SNX1-210ENST00000560260 POU2F1P14859 743 aa19.25■□□□□ 0.67
SNX1-210ENST00000560260 FASP25445 335 aa19.25■□□□□ 0.67
SNX1-210ENST00000560260 CCKARP32238 428 aa19.25■□□□□ 0.67
SNX1-210ENST00000560260 FOXG1P55316 489 aaPredicted RBP19.25■□□□□ 0.67
SNX1-210ENST00000560260 TSPAN31Q12999 210 aa19.25■□□□□ 0.67
SNX1-210ENST00000560260 SLC35D2Q76EJ3 337 aa19.25■□□□□ 0.67
SNX1-210ENST00000560260 ZNF100Q8IYN0 542 aa19.25■□□□□ 0.67
SNX1-210ENST00000560260 GABRG1Q8N1C3 465 aa19.25■□□□□ 0.67
SNX1-210ENST00000560260 GIPC3Q8TF64 312 aa19.25■□□□□ 0.67
SNX1-210ENST00000560260 RNASE6Q93091 150 aaKnown RBP19.25■□□□□ 0.67
SNX1-210ENST00000560260 PKP2Q99959 881 aa19.25■□□□□ 0.67
SNX1-210ENST00000560260 SLC7A10Q9NS82 523 aa19.25■□□□□ 0.67
SNX1-210ENST00000560260 ARRDC5A6NEK1 342 aa19.24■□□□□ 0.67
SNX1-210ENST00000560260 FCGR1AP12314 374 aa19.24■□□□□ 0.67
SNX1-210ENST00000560260 IFNGR2P38484 337 aa19.24■□□□□ 0.67
SNX1-210ENST00000560260 ZFP1Q6P2D0 407 aa19.24■□□□□ 0.67
SNX1-210ENST00000560260 SHQ1Q6PI26 577 aaKnown RBP19.24■□□□□ 0.67
SNX1-210ENST00000560260 KIF18BQ86Y91 864 aa19.24■□□□□ 0.67
SNX1-210ENST00000560260 LINC00471Q8N535 108 aa19.24■□□□□ 0.67
SNX1-210ENST00000560260 GTPBP3Q969Y2 492 aaKnown RBP19.24■□□□□ 0.67
SNX1-210ENST00000560260 NIPSNAP1Q9BPW8 284 aa19.24■□□□□ 0.67
SNX1-210ENST00000560260 DGCR6LQ9BY27 220 aa19.24■□□□□ 0.67
SNX1-210ENST00000560260 S100A14Q9HCY8 104 aa19.24■□□□□ 0.67
SNX1-210ENST00000560260 PDP1Q9P0J1 537 aaPredicted RBP19.24■□□□□ 0.67
SNX1-210ENST00000560260 IL20RAQ9UHF4 553 aa19.24■□□□□ 0.67
SNX1-210ENST00000560260 KLF2Q9Y5W3 355 aaPredicted RBP19.24■□□□□ 0.67
SNX1-210ENST00000560260 SLC35F4A4IF30 521 aa19.23■□□□□ 0.67
SNX1-210ENST00000560260 PRSS44E7EML9 344 aa19.23■□□□□ 0.67
SNX1-210ENST00000560260 UPK3AO75631 287 aa19.23■□□□□ 0.67
SNX1-210ENST00000560260 PRKACGP22612 351 aa19.23■□□□□ 0.67
SNX1-210ENST00000560260 BIDP55957 195 aa19.23■□□□□ 0.67
SNX1-210ENST00000560260 RUNX1T1Q06455 604 aa19.23■□□□□ 0.67
SNX1-210ENST00000560260 FAM27E3Q08E93 113 aa19.23■□□□□ 0.67
SNX1-210ENST00000560260 SNTB1Q13884 538 aaKnown RBP19.23■□□□□ 0.67
SNX1-210ENST00000560260 ACKR1Q16570 336 aa19.23■□□□□ 0.67
SNX1-210ENST00000560260 ANKDD1AQ495B1 522 aa19.23■□□□□ 0.67
SNX1-210ENST00000560260 PHYHD1Q5SRE7 291 aa19.23■□□□□ 0.67
SNX1-210ENST00000560260 ZNF620Q6ZNG0 422 aa19.23■□□□□ 0.67
SNX1-210ENST00000560260 LINGO2Q7L985 606 aa19.23■□□□□ 0.67
SNX1-210ENST00000560260 FANK1Q8TC84 345 aa19.23■□□□□ 0.67
SNX1-210ENST00000560260 ASB10Q8WXI3 467 aa19.23■□□□□ 0.67
SNX1-210ENST00000560260 TSPAN32Q96QS1 320 aa19.23■□□□□ 0.67
SNX1-210ENST00000560260 FEVQ99581 238 aa19.23■□□□□ 0.67
SNX1-210ENST00000560260 SEMA6AQ9H2E6 1030 aa19.23■□□□□ 0.67
SNX1-210ENST00000560260 SLCO5A1Q9H2Y9 848 aa19.23■□□□□ 0.67
SNX1-210ENST00000560260 PARPBPQ9NWS1 579 aa19.23■□□□□ 0.67
SNX1-210ENST00000560260 MALT1Q9UDY8 824 aa19.23■□□□□ 0.67
SNX1-210ENST00000560260 MGAT4BQ9UQ53 548 aa19.23■□□□□ 0.67
SNX1-210ENST00000560260 ICE1Q9Y2F5 2266 aa19.23■□□□□ 0.67
SNX1-210ENST00000560260 ALPK2Q86TB3 2170 aa19.22■□□□□ 0.67
SNX1-210ENST00000560260 NDUFB2O95178 105 aa19.22■□□□□ 0.67
SNX1-210ENST00000560260 IGHMP01871 453 aa19.22■□□□□ 0.67
SNX1-210ENST00000560260 TP53P04637 393 aaPredicted RBP19.22■□□□□ 0.67
SNX1-210ENST00000560260 IGFBP1P08833 259 aaPredicted RBP19.22■□□□□ 0.67
SNX1-210ENST00000560260 CD79BP40259 229 aa19.22■□□□□ 0.67
SNX1-210ENST00000560260 CTXN1P60606 82 aa19.22■□□□□ 0.67
SNX1-210ENST00000560260 TOP3AQ13472 1001 aaPredicted RBP19.22■□□□□ 0.67
SNX1-210ENST00000560260 CAMK2DQ13557 499 aa19.22■□□□□ 0.67
SNX1-210ENST00000560260 ARMC4Q5T2S8 1044 aa19.22■□□□□ 0.67
SNX1-210ENST00000560260 CARD17Q5XLA6 110 aa19.22■□□□□ 0.67
SNX1-210ENST00000560260 FBXW9Q5XUX1 488 aa19.22■□□□□ 0.67
SNX1-210ENST00000560260 Q6ZT83 130 aa19.22■□□□□ 0.67
SNX1-210ENST00000560260 STK32CQ86UX6 486 aa19.22■□□□□ 0.67
SNX1-210ENST00000560260 OR5K1Q8NHB7 308 aa19.22■□□□□ 0.67
SNX1-210ENST00000560260 ALKBH3Q96Q83 286 aaPredicted RBP19.22■□□□□ 0.67
SNX1-210ENST00000560260 GPX7Q96SL4 187 aaPredicted RBP19.22■□□□□ 0.67
SNX1-210ENST00000560260 KATNB1Q9BVA0 655 aa19.22■□□□□ 0.67
SNX1-210ENST00000560260 OR52D1Q9H346 318 aa19.22■□□□□ 0.67
SNX1-210ENST00000560260 EGLN3Q9H6Z9 239 aa19.22■□□□□ 0.67
SNX1-210ENST00000560260 FOXD3Q9UJU5 478 aaPredicted RBP19.22■□□□□ 0.67
SNX1-210ENST00000560260 ADAM18Q9Y3Q7 739 aa19.22■□□□□ 0.67
SNX1-210ENST00000560260 NPIPB13A6NJU9 1138 aa19.21■□□□□ 0.67
SNX1-210ENST00000560260 NPIPB4C9JG80 1138 aa19.21■□□□□ 0.67
SNX1-210ENST00000560260 PDLIM1O00151 329 aa19.21■□□□□ 0.67
SNX1-210ENST00000560260 AKAP8O43823 692 aaKnown RBP19.21■□□□□ 0.67
SNX1-210ENST00000560260 SLC43A1O75387 559 aa19.21■□□□□ 0.67
SNX1-210ENST00000560260 ADAP00813 363 aa19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms