RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 APCP25054 2843 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 A0A1W2PRV1 198 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 FAM149AA5PLN7 773 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 MFSD2BA6NFX1 497 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 ZNF487B1APH4 448 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 LIN7AO14910 233 aaPredicted RBP3.51□□□□□ -1.85
PRPF39-209ENST00000556353 XPO1O14980 1071 aaKnown RBP3.51□□□□□ -1.85
PRPF39-209ENST00000556353 LRRTM2O43300 516 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 GATCO43716 136 aaKnown RBP3.51□□□□□ -1.85
PRPF39-209ENST00000556353 CALUO43852 315 aaPredicted RBP3.51□□□□□ -1.85
PRPF39-209ENST00000556353 IGLV3-25P01717 112 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 APOEP02649 317 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 RPS17P08708 135 aaKnown RBP3.51□□□□□ -1.85
PRPF39-209ENST00000556353 RALBP11234 206 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 PRKACAP17612 351 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 LBPP18428 481 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 SRD5A2P31213 254 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 TAGLN2P37802 199 aaKnown RBP3.51□□□□□ -1.85
PRPF39-209ENST00000556353 SYKP43405 635 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 CSNK1EP49674 416 aaKnown RBP3.51□□□□□ -1.85
PRPF39-209ENST00000556353 STK19P49842 368 aaPredicted RBP3.51□□□□□ -1.85
PRPF39-209ENST00000556353 SUCLG1P53597 346 aaKnown RBP3.51□□□□□ -1.85
PRPF39-209ENST00000556353 CASP9P55211 416 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 DAOAP59103 153 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 RPS14P62263 151 aaKnown RBP3.51□□□□□ -1.85
PRPF39-209ENST00000556353 RPS24P62847 133 aaKnown RBP3.51□□□□□ -1.85
PRPF39-209ENST00000556353 IL9RQ01113 521 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 ENPEPQ07075 957 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 SCN1BQ07699 218 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 NPRL3Q12980 569 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 FADDQ13158 208 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 XRCC4Q13426 336 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 PDK1Q15118 436 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 THEM4Q5T1C6 240 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 MPP7Q5T2T1 576 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 ATAD3BQ5T9A4 648 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 SPECC1LQ69YQ0 1117 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 TXNRD3NBQ6F5E7 133 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 CAVIN1Q6NZI2 390 aaKnown RBP3.51□□□□□ -1.85
PRPF39-209ENST00000556353 ZCCHC12Q6PEW1 402 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 TRAT1Q6PIZ9 186 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 LRRC31Q6UY01 552 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 TAC4Q86UU9 113 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 MEX3DQ86XN8 651 aaKnown RBP3.51□□□□□ -1.85
PRPF39-209ENST00000556353 ZNF677Q86XU0 584 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 CNTN4Q8IWV2 1026 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 ZNF679Q8IYX0 411 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 TMEM99Q8N816 258 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 CLEC1AQ8NC01 280 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 ZNRF1Q8ND25 227 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 FBXL13Q8NEE6 735 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 OR2T3Q8NH03 318 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 PSMA8Q8TAA3 256 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 C8orf46Q8TAG6 207 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 UBA3Q8TBC4 463 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 DQX1Q8TE96 717 aaKnown RBP3.51□□□□□ -1.85
PRPF39-209ENST00000556353 GTSF1Q8WW33 167 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 IFT81Q8WYA0 676 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 THRSPQ92748 146 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 NT5C3BQ969T7 300 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 CIDECQ96AQ7 238 aaPredicted RBP3.51□□□□□ -1.85
PRPF39-209ENST00000556353 SIPA1Q96FS4 1042 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 TRNT1Q96Q11 434 aaKnown RBP3.51□□□□□ -1.85
PRPF39-209ENST00000556353 XPO6Q96QU8 1125 aaKnown RBP3.51□□□□□ -1.85
PRPF39-209ENST00000556353 C19orf43Q9BQ61 176 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 DEFB126Q9BYW3 111 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 POLR1EQ9GZS1 481 aaKnown RBP3.51□□□□□ -1.85
PRPF39-209ENST00000556353 C6orf62Q9GZU0 229 aaPredicted RBP3.51□□□□□ -1.85
PRPF39-209ENST00000556353 PRSS16Q9NQE7 514 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 CENPMQ9NSP4 180 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 ABCB8Q9NUT2 735 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 ZNF446Q9NWS9 450 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 ELOVL2Q9NXB9 296 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 KLHL28Q9NXS3 571 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 IL17CQ9P0M4 197 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 RCOR3Q9P2K3 495 aaPredicted RBP3.51□□□□□ -1.85
PRPF39-209ENST00000556353 LEF1Q9UJU2 399 aaPredicted RBP3.51□□□□□ -1.85
PRPF39-209ENST00000556353 GGA2Q9UJY4 613 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 LSM7Q9UK45 103 aaKnown RBP3.51□□□□□ -1.85
PRPF39-209ENST00000556353 COQ4Q9Y3A0 265 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 DOPEY1Q5JWR5 2465 aa3.51□□□□□ -1.85
PRPF39-209ENST00000556353 PIKFYVEQ9Y2I7 2098 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 PDZD2O15018 2839 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 CCDC88CQ9P219 2028 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 A0A087WV48 116 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 MEI4A8MW99 385 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 M0QYV0 167 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 RASGRF2O14827 1237 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 P2RX6O15547 441 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 SCO2O43819 266 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 TRIM3O75382 744 aaPredicted RBP3.5□□□□□ -1.85
PRPF39-209ENST00000556353 CDK14O94921 469 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 SNAPINO95295 136 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 IL6P05231 212 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 FHP07954 510 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 VCLP18206 1134 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 CRABP2P29373 138 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 ALDH3A1P30838 453 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 MAT2AP31153 395 aaKnown RBP3.5□□□□□ -1.85
PRPF39-209ENST00000556353 GTF2H1P32780 548 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms