RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 TSPAN11A1L157 253 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 PRAMEF4O60810 478 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 GABRA1P14867 456 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 NR0B1P51843 470 aaKnown RBP13.13□□□□□ -0.31
LIMS1-215ENST00000544547 PDX1P52945 283 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 RAB30Q15771 203 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 MRPL2Q5T653 305 aaKnown RBP13.13□□□□□ -0.31
LIMS1-215ENST00000544547 PRAMEF9Q5VWM5 478 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 OR10K2Q6IF99 312 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 MMABQ96EY8 250 aaPredicted RBP13.13□□□□□ -0.31
LIMS1-215ENST00000544547 EPHA6Q9UF33 1036 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 ZNF443Q9Y2A4 671 aaPredicted RBP13.13□□□□□ -0.31
LIMS1-215ENST00000544547 LSM2Q9Y333 95 aaKnown RBP13.13□□□□□ -0.31
LIMS1-215ENST00000544547 FITM1A5D6W6 292 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 H3BNC9 293 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 H7C1Q1 480 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 KAT7O95251 611 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 ABCA11PQ4W5N1 156 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 TMEM201Q5SNT2 666 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 MANEAQ5SRI9 462 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 C3orf33Q6P1S2 294 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 NIPAL3Q6P499 406 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 ZNF417Q8TAU3 575 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 TSPAN10Q9H1Z9 355 aaPredicted RBP13.13□□□□□ -0.31
LIMS1-215ENST00000544547 CA10Q9NS85 328 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 SERTAD3Q9UJW9 196 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 TGM5O43548 720 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 F12P00748 615 aaPredicted RBP13.13□□□□□ -0.31
LIMS1-215ENST00000544547 CD3DP04234 171 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 PET100P0DJ07 73 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 CXCL2P19875 107 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 SPOCK1Q08629 439 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 TCEAL6Q6IPX3 200 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 RAB7BQ96AH8 199 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 SENP5Q96HI0 755 aaPredicted RBP13.13□□□□□ -0.31
LIMS1-215ENST00000544547 ZNF75AQ96N20 296 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 WDR77Q9BQA1 342 aaPredicted RBP13.13□□□□□ -0.31
LIMS1-215ENST00000544547 CWH43Q9H720 699 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 UFSP2Q9NUQ7 469 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 URGCP-MRPS24S4R325 110 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 SOX1O00570 391 aaPredicted RBP13.13□□□□□ -0.31
LIMS1-215ENST00000544547 SELENOFO60613 162 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 PAPLNO95428 1278 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 OR8U9P0C7N5 309 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 NME1P15531 152 aaKnown RBP13.13□□□□□ -0.31
LIMS1-215ENST00000544547 VIPR2P41587 438 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 NKX6-1P78426 367 aaPredicted RBP13.13□□□□□ -0.31
LIMS1-215ENST00000544547 B4GALNT1Q00973 533 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 C9orf152Q5JTZ5 239 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 PXKQ7Z7A4 578 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 KLHDC8BQ8IXV7 354 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 METTL27Q8N6F8 245 aaPredicted RBP13.13□□□□□ -0.31
LIMS1-215ENST00000544547 OR1S2Q8NGQ3 325 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 SLC46A2Q9BY10 475 aa13.13□□□□□ -0.31
LIMS1-215ENST00000544547 C7orf66A4D0T2 115 aa13.12□□□□□ -0.31
LIMS1-215ENST00000544547 H7C1C5 153 aa13.12□□□□□ -0.31
LIMS1-215ENST00000544547 PPM1DO15297 605 aa13.12□□□□□ -0.31
LIMS1-215ENST00000544547 ADH1BP00325 375 aa13.12□□□□□ -0.31
LIMS1-215ENST00000544547 ZDHHC11BP0C7U3 371 aa13.12□□□□□ -0.31
LIMS1-215ENST00000544547 GP1BBP13224 206 aa13.12□□□□□ -0.31
LIMS1-215ENST00000544547 LCN6P62502 163 aa13.12□□□□□ -0.31
LIMS1-215ENST00000544547 GUCA2AQ02747 115 aa13.12□□□□□ -0.31
LIMS1-215ENST00000544547 OR4D11Q8NGI4 311 aa13.12□□□□□ -0.31
LIMS1-215ENST00000544547 OR4C16Q8NGL9 310 aa13.12□□□□□ -0.31
LIMS1-215ENST00000544547 KCNE1BA0A087WTH5 132 aa13.12□□□□□ -0.31
LIMS1-215ENST00000544547 TSTD3H0UI37 97 aa13.12□□□□□ -0.31
LIMS1-215ENST00000544547 HTR3BO95264 441 aa13.12□□□□□ -0.31
LIMS1-215ENST00000544547 HSD11B1P28845 292 aa13.12□□□□□ -0.31
LIMS1-215ENST00000544547 OPRD1P41143 372 aa13.12□□□□□ -0.31
LIMS1-215ENST00000544547 CDK5Q00535 292 aa13.12□□□□□ -0.31
LIMS1-215ENST00000544547 HSD17B13Q7Z5P4 300 aaPredicted RBP13.12□□□□□ -0.31
LIMS1-215ENST00000544547 ZNF679Q8IYX0 411 aa13.12□□□□□ -0.31
LIMS1-215ENST00000544547 PNLDC1Q8NA58 520 aaKnown RBP13.12□□□□□ -0.31
LIMS1-215ENST00000544547 CCDC54Q8NEL0 328 aa13.12□□□□□ -0.31
LIMS1-215ENST00000544547 ZG16BQ96DA0 208 aa13.12□□□□□ -0.31
LIMS1-215ENST00000544547 FAM83CQ9BQN1 747 aa13.12□□□□□ -0.31
LIMS1-215ENST00000544547 GAREM1Q9H706 876 aa13.12□□□□□ -0.31
LIMS1-215ENST00000544547 APMAPQ9HDC9 416 aa13.12□□□□□ -0.31
LIMS1-215ENST00000544547 FBXO4Q9UKT5 387 aa13.12□□□□□ -0.31
LIMS1-215ENST00000544547 C14orf166Q9Y224 244 aaKnown RBP13.12□□□□□ -0.31
LIMS1-215ENST00000544547 CCL26Q9Y258 94 aa13.12□□□□□ -0.31
LIMS1-215ENST00000544547 CACNA1IQ9P0X4 2223 aa13.12□□□□□ -0.31
LIMS1-215ENST00000544547 IFITM5A6NNB3 132 aa13.12□□□□□ -0.31
LIMS1-215ENST00000544547 TMPRSS11DO60235 418 aa13.12□□□□□ -0.31
LIMS1-215ENST00000544547 KLF8O95600 359 aaPredicted RBP13.12□□□□□ -0.31
LIMS1-215ENST00000544547 GAAP10253 952 aa13.12□□□□□ -0.31
LIMS1-215ENST00000544547 MGMTP16455 207 aa13.12□□□□□ -0.31
LIMS1-215ENST00000544547 RPS21P63220 83 aaKnown RBP13.12□□□□□ -0.31
LIMS1-215ENST00000544547 ZNF701Q9NV72 531 aaPredicted RBP13.12□□□□□ -0.31
LIMS1-215ENST00000544547 DOCK3Q8IZD9 2030 aa13.12□□□□□ -0.31
LIMS1-215ENST00000544547 NPIPA5E9PKD4 350 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 GPRIN2O60269 458 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 SRPX2O60687 465 aaPredicted RBP13.11□□□□□ -0.31
LIMS1-215ENST00000544547 SLCO2B1O94956 709 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 F11P03951 625 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 S100A8P05109 93 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 OR2T7P0C7T2 308 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 PRPH2P23942 346 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 RPS27P42677 84 aaKnown RBP13.11□□□□□ -0.31
LIMS1-215ENST00000544547 POU3F4P49335 361 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms