RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 ZNF300Q96RE9 604 aaPredicted RBP2.72□□□□□ -1.97
USP28-210ENST00000542033 MAPKAP1Q9BPZ7 522 aa2.72□□□□□ -1.97
USP28-210ENST00000542033 TMEM246Q9BRR3 403 aa2.72□□□□□ -1.97
USP28-210ENST00000542033 CABLES2Q9BTV7 478 aa2.72□□□□□ -1.97
USP28-210ENST00000542033 MED18Q9BUE0 208 aa2.72□□□□□ -1.97
USP28-210ENST00000542033 TSSK1BQ9BXA7 367 aa2.72□□□□□ -1.97
USP28-210ENST00000542033 POTEKPQ9BYX7 375 aa2.72□□□□□ -1.97
USP28-210ENST00000542033 TRIM9Q9C026 710 aa2.72□□□□□ -1.97
USP28-210ENST00000542033 RAB33BQ9H082 229 aa2.72□□□□□ -1.97
USP28-210ENST00000542033 DNTTIP1Q9H147 329 aa2.72□□□□□ -1.97
USP28-210ENST00000542033 SPNS1Q9H2V7 528 aa2.72□□□□□ -1.97
USP28-210ENST00000542033 SMYD3Q9H7B4 428 aa2.72□□□□□ -1.97
USP28-210ENST00000542033 MTHFD2LQ9H903 347 aaPredicted RBP2.72□□□□□ -1.97
USP28-210ENST00000542033 WDR76Q9H967 626 aa2.72□□□□□ -1.97
USP28-210ENST00000542033 UGT1A7Q9HAW7 530 aa2.72□□□□□ -1.97
USP28-210ENST00000542033 UGT1A10Q9HAW8 530 aa2.72□□□□□ -1.97
USP28-210ENST00000542033 UGT1A8Q9HAW9 530 aa2.72□□□□□ -1.97
USP28-210ENST00000542033 FOLH1BQ9HBA9 442 aa2.72□□□□□ -1.97
USP28-210ENST00000542033 ANKHQ9HCJ1 492 aa2.72□□□□□ -1.97
USP28-210ENST00000542033 XPNPEP1Q9NQW7 623 aa2.72□□□□□ -1.97
USP28-210ENST00000542033 GDF3Q9NR23 364 aa2.72□□□□□ -1.97
USP28-210ENST00000542033 YAE1D1Q9NRH1 226 aa2.72□□□□□ -1.97
USP28-210ENST00000542033 SMOXQ9NWM0 555 aa2.72□□□□□ -1.97
USP28-210ENST00000542033 SDHAF2Q9NX18 166 aa2.72□□□□□ -1.97
USP28-210ENST00000542033 IMPAD1Q9NX62 359 aa2.72□□□□□ -1.97
USP28-210ENST00000542033 TECRQ9NZ01 308 aaKnown RBP2.72□□□□□ -1.97
USP28-210ENST00000542033 NUDT4Q9NZJ9 180 aa2.72□□□□□ -1.97
USP28-210ENST00000542033 BFARQ9NZS9 450 aa2.72□□□□□ -1.97
USP28-210ENST00000542033 ZNF229Q9UJW7 825 aa2.72□□□□□ -1.97
USP28-210ENST00000542033 POMT2Q9UKY4 750 aa2.72□□□□□ -1.97
USP28-210ENST00000542033 STAP1Q9ULZ2 295 aa2.72□□□□□ -1.97
USP28-210ENST00000542033 SNX24Q9Y343 169 aa2.72□□□□□ -1.97
USP28-210ENST00000542033 MMP24Q9Y5R2 645 aa2.72□□□□□ -1.97
USP28-210ENST00000542033 CDC42BPBQ9Y5S2 1711 aa2.72□□□□□ -1.97
USP28-210ENST00000542033 HSPE1-MOB4S4R3N1 261 aa2.72□□□□□ -1.97
USP28-210ENST00000542033 ADGRB3O60242 1522 aa2.72□□□□□ -1.97
USP28-210ENST00000542033 LRRC7Q96NW7 1537 aa2.72□□□□□ -1.97
USP28-210ENST00000542033 ABCA9Q8IUA7 1624 aa2.71□□□□□ -1.97
USP28-210ENST00000542033 RNF17Q9BXT8 1623 aaKnown RBP2.71□□□□□ -1.97
USP28-210ENST00000542033 ZNF609O15014 1411 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 ABCC5O15440 1437 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 PTCH1Q13635 1447 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 hCG_38984A0A1B0GV85 526 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 GSAPA4D1B5 854 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 A6NIZ1 184 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 SAGE2PA6NJ88 616 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 MPTX1A8MV57 137 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 LRRN3E7EW58 273 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 E9PQ18 207 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 H7C2Y5 167 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 SGK494L7N484 410 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 SULT1C2O00338 296 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 SURF4O15260 269 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 LRRTM2O43300 516 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 MED7O43513 233 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 RAD1O60671 282 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 TBX19O60806 448 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 SLC22A5O76082 557 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 NDUFA7O95182 113 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 PRAMEF12O95522 483 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 GOT2P00505 430 aaKnown RBP2.71□□□□□ -1.98
USP28-210ENST00000542033 PGK1P00558 417 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 AGTP01019 485 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 IL1BP01584 269 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 IFNA6P05013 189 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 GUSBP08236 651 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 HCKP08631 526 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 CTXN2P0C2S0 81 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 SLC2A1P11166 492 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 ADRB3P13945 408 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 PSMC3P17980 439 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 XRCC1P18887 633 aaPredicted RBP2.71□□□□□ -1.98
USP28-210ENST00000542033 ZP3P21754 424 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 GPX3P22352 226 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 CCNOP22674 350 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 GLRA1P23415 457 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 DTYMKP23919 212 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 IGFBP5P24593 272 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 PAX6P26367 422 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 G0S2P27469 103 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 DCKP27707 260 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 PTPN6P29350 595 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 CD40LGP29965 261 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 HNRNPH3P31942 346 aaKnown RBP2.71□□□□□ -1.98
USP28-210ENST00000542033 FCGR2BP31994 310 aaPredicted RBP2.71□□□□□ -1.98
USP28-210ENST00000542033 OTX1P32242 354 aaPredicted RBP2.71□□□□□ -1.98
USP28-210ENST00000542033 CCR7P32248 378 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 ADRA1AP35348 466 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 BTDP43251 543 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 BRCC3P46736 316 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 TAF6P49848 677 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 ERFP50548 548 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 HSPA2P54652 639 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 TMBIM6P55061 237 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 ATP5IP56385 69 aaPredicted RBP2.71□□□□□ -1.98
USP28-210ENST00000542033 SPIBQ01892 262 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 MERTKQ12866 999 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 SNTB2Q13425 540 aaKnown RBP2.71□□□□□ -1.98
USP28-210ENST00000542033 IL18Q14116 193 aa2.71□□□□□ -1.98
USP28-210ENST00000542033 MTF1Q14872 753 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms