RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 A4GNTQ9UNA3 340 aa12.41□□□□□ -0.42
USP28-209ENST00000540925 USF3Q68DE3 2245 aa12.41□□□□□ -0.42
USP28-209ENST00000540925 ANK3Q12955 4377 aaKnown RBP12.41□□□□□ -0.42
USP28-209ENST00000540925 CXCR6O00574 342 aa12.4□□□□□ -0.42
USP28-209ENST00000540925 SHOX2O60902 331 aaPredicted RBP12.4□□□□□ -0.42
USP28-209ENST00000540925 CH25HO95992 272 aa12.4□□□□□ -0.42
USP28-209ENST00000540925 CD8AP01732 235 aa12.4□□□□□ -0.42
USP28-209ENST00000540925 MT-ND1P03886 318 aa12.4□□□□□ -0.42
USP28-209ENST00000540925 CD99P14209 185 aa12.4□□□□□ -0.42
USP28-209ENST00000540925 NQO1P15559 274 aaKnown RBP12.4□□□□□ -0.42
USP28-209ENST00000540925 PTH2RP49190 550 aa12.4□□□□□ -0.42
USP28-209ENST00000540925 UGT2B15P54855 530 aa12.4□□□□□ -0.42
USP28-209ENST00000540925 PRPS1P60891 318 aa12.4□□□□□ -0.42
USP28-209ENST00000540925 PSME3P61289 254 aa12.4□□□□□ -0.42
USP28-209ENST00000540925 GNGT1P63211 74 aa12.4□□□□□ -0.42
USP28-209ENST00000540925 POU3F1Q03052 451 aaPredicted RBP12.4□□□□□ -0.42
USP28-209ENST00000540925 C1DQ13901 141 aaKnown RBP12.4□□□□□ -0.42
USP28-209ENST00000540925 FXNQ16595 210 aa12.4□□□□□ -0.42
USP28-209ENST00000540925 ANKRD16Q6P6B7 361 aa12.4□□□□□ -0.42
USP28-209ENST00000540925 KLHL17Q6TDP4 642 aa12.4□□□□□ -0.42
USP28-209ENST00000540925 B3GLCTQ6Y288 498 aa12.4□□□□□ -0.42
USP28-209ENST00000540925 DEF8Q6ZN54 512 aa12.4□□□□□ -0.42
USP28-209ENST00000540925 CBLL1Q75N03 491 aa12.4□□□□□ -0.42
USP28-209ENST00000540925 ZNF627Q7L945 461 aa12.4□□□□□ -0.42
USP28-209ENST00000540925 TSEN54Q7Z6J9 526 aaKnown RBP12.4□□□□□ -0.42
USP28-209ENST00000540925 VTCN1Q7Z7D3 282 aa12.4□□□□□ -0.42
USP28-209ENST00000540925 CPLX4Q7Z7G2 160 aa12.4□□□□□ -0.42
USP28-209ENST00000540925 DTX2Q86UW9 622 aa12.4□□□□□ -0.42
USP28-209ENST00000540925 FAM169BQ8N8A8 192 aa12.4□□□□□ -0.42
USP28-209ENST00000540925 PIK3C3Q8NEB9 887 aa12.4□□□□□ -0.42
USP28-209ENST00000540925 SMAP2Q8WU79 429 aaPredicted RBP12.4□□□□□ -0.42
USP28-209ENST00000540925 TMEM255BQ8WV15 326 aa12.4□□□□□ -0.42
USP28-209ENST00000540925 NANSQ9NR45 359 aa12.4□□□□□ -0.42
USP28-209ENST00000540925 MAN2C1Q9NTJ4 1040 aa12.4□□□□□ -0.42
USP28-209ENST00000540925 MED29Q9NX70 200 aa12.4□□□□□ -0.42
USP28-209ENST00000540925 MGAT4BQ9UQ53 548 aa12.4□□□□□ -0.42
USP28-209ENST00000540925 MAGED1Q9Y5V3 778 aaPredicted RBP12.4□□□□□ -0.42
USP28-209ENST00000540925 SNX13Q9Y5W8 968 aa12.4□□□□□ -0.42
USP28-209ENST00000540925 FBN3Q75N90 2809 aa12.4□□□□□ -0.42
USP28-209ENST00000540925 SLC35F4A4IF30 521 aa12.39□□□□□ -0.43
USP28-209ENST00000540925 E7EQL1 145 aa12.39□□□□□ -0.43
USP28-209ENST00000540925 KPNA4O00629 521 aaPredicted RBP12.39□□□□□ -0.43
USP28-209ENST00000540925 NDUFAB1O14561 156 aa12.39□□□□□ -0.43
USP28-209ENST00000540925 FFAR1O14842 300 aa12.39□□□□□ -0.43
USP28-209ENST00000540925 AKAP8O43823 692 aaKnown RBP12.39□□□□□ -0.43
USP28-209ENST00000540925 KRT33AO76009 404 aa12.39□□□□□ -0.43
USP28-209ENST00000540925 PRSS23O95084 383 aa12.39□□□□□ -0.43
USP28-209ENST00000540925 IGLV1-44P01699 117 aa12.39□□□□□ -0.43
USP28-209ENST00000540925 HOXB1P14653 301 aaPredicted RBP12.39□□□□□ -0.43
USP28-209ENST00000540925 FOSL1P15407 271 aa12.39□□□□□ -0.43
USP28-209ENST00000540925 CDH11P55287 796 aa12.39□□□□□ -0.43
USP28-209ENST00000540925 TAS2R41P59536 307 aa12.39□□□□□ -0.43
USP28-209ENST00000540925 ARF1P84077 181 aaKnown RBP12.39□□□□□ -0.43
USP28-209ENST00000540925 C3orf36Q3SXR2 165 aa12.39□□□□□ -0.43
USP28-209ENST00000540925 Q5PR19 223 aa12.39□□□□□ -0.43
USP28-209ENST00000540925 HMBOX1Q6NT76 420 aa12.39□□□□□ -0.43
USP28-209ENST00000540925 C10orf53Q8N6V4 93 aa12.39□□□□□ -0.43
USP28-209ENST00000540925 PFN4Q8NHR9 129 aa12.39□□□□□ -0.43
USP28-209ENST00000540925 TMEM171Q8WVE6 324 aa12.39□□□□□ -0.43
USP28-209ENST00000540925 TPD52L3Q96J77 140 aa12.39□□□□□ -0.43
USP28-209ENST00000540925 PRRC1Q96M27 445 aa12.39□□□□□ -0.43
USP28-209ENST00000540925 TRAF4Q9BUZ4 470 aaPredicted RBP12.39□□□□□ -0.43
USP28-209ENST00000540925 EMC6Q9BV81 110 aa12.39□□□□□ -0.43
USP28-209ENST00000540925 CXorf56Q9H5V9 222 aa12.39□□□□□ -0.43
USP28-209ENST00000540925 CRLF2Q9HC73 371 aa12.39□□□□□ -0.43
USP28-209ENST00000540925 C20orf141Q9NUB4 165 aa12.39□□□□□ -0.43
USP28-209ENST00000540925 CISD1Q9NZ45 108 aaKnown RBP12.39□□□□□ -0.43
USP28-209ENST00000540925 LAMP3Q9UQV4 416 aa12.39□□□□□ -0.43
USP28-209ENST00000540925 IGHV1-18A0A0C4DH31 117 aa12.38□□□□□ -0.43
USP28-209ENST00000540925 ZNF503-AS2A6NEH8 195 aa12.38□□□□□ -0.43
USP28-209ENST00000540925 ZNF99A8MXY4 864 aaPredicted RBP12.38□□□□□ -0.43
USP28-209ENST00000540925 M0R1B8 84 aa12.38□□□□□ -0.43
USP28-209ENST00000540925 DYNC1I1O14576 645 aa12.38□□□□□ -0.43
USP28-209ENST00000540925 WNT11O96014 354 aa12.38□□□□□ -0.43
USP28-209ENST00000540925 IGKV3-15P01624 115 aa12.38□□□□□ -0.43
USP28-209ENST00000540925 ADORA3P0DMS8 318 aa12.38□□□□□ -0.43
USP28-209ENST00000540925 CDH2P19022 906 aaPredicted RBP12.38□□□□□ -0.43
USP28-209ENST00000540925 PAX7P23759 505 aa12.38□□□□□ -0.43
USP28-209ENST00000540925 RPS4XP62701 263 aaKnown RBP12.38□□□□□ -0.43
USP28-209ENST00000540925 LSM11P83369 360 aaKnown RBP eCLIP12.38□□□□□ -0.43
USP28-209ENST00000540925 CEACAM16Q2WEN9 425 aa12.38□□□□□ -0.43
USP28-209ENST00000540925 C11orf71Q6IPW1 123 aa12.38□□□□□ -0.43
USP28-209ENST00000540925 OFCC1Q8IZS5 231 aa12.38□□□□□ -0.43
USP28-209ENST00000540925 GPR137CQ8N3F9 429 aa12.38□□□□□ -0.43
USP28-209ENST00000540925 ANKS4BQ8N8V4 417 aa12.38□□□□□ -0.43
USP28-209ENST00000540925 OR6X1Q8NH79 312 aa12.38□□□□□ -0.43
USP28-209ENST00000540925 TMEM239Q8WW34 195 aa12.38□□□□□ -0.43
USP28-209ENST00000540925 LZICQ8WZA0 190 aa12.38□□□□□ -0.43
USP28-209ENST00000540925 PERPQ96FX8 193 aa12.38□□□□□ -0.43
USP28-209ENST00000540925 POM121Q96HA1 1249 aa12.38□□□□□ -0.43
USP28-209ENST00000540925 HS6ST2Q96MM7 605 aa12.38□□□□□ -0.43
USP28-209ENST00000540925 SEPHS2Q99611 448 aa12.38□□□□□ -0.43
USP28-209ENST00000540925 C1QTNF6Q9BXI9 259 aa12.38□□□□□ -0.43
USP28-209ENST00000540925 SPAG4Q9NPE6 437 aa12.38□□□□□ -0.43
USP28-209ENST00000540925 ARL2BPQ9Y2Y0 163 aa12.38□□□□□ -0.43
USP28-209ENST00000540925 ABCA2Q9BZC7 2435 aa12.38□□□□□ -0.43
USP28-209ENST00000540925 ARHGEF9O43307 516 aa12.37□□□□□ -0.43
USP28-209ENST00000540925 OR7A10O76100 309 aa12.37□□□□□ -0.43
USP28-209ENST00000540925 IFNGR1P15260 489 aa12.37□□□□□ -0.43
USP28-209ENST00000540925 AHCYP23526 432 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms