RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 TMEM184AQ6ZMB5 413 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 GATSQ8NAP1 163 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 FAM71CQ8NEG0 241 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 OR2T4Q8NH00 348 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 S100A16Q96FQ6 103 aaKnown RBP17.54■□□□□ 0.4
VPS28-213ENST00000530983 RADILQ96JH8 1075 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 MOGAT1Q96PD6 335 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 DGAT2Q96PD7 388 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 OR10A5Q9H207 317 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 NPDC1Q9NQX5 325 aaPredicted RBP17.54■□□□□ 0.4
VPS28-213ENST00000530983 UBQLN2Q9UHD9 624 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 MRM2Q9UI43 246 aaKnown RBP17.54■□□□□ 0.4
VPS28-213ENST00000530983 KNL1Q8NG31 2342 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 NUP210LQ5VU65 1888 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 EPOPA6NHQ4 379 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 SULT1B1O43704 296 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 PRKNO60260 465 aaPredicted RBP17.54■□□□□ 0.4
VPS28-213ENST00000530983 TMEM127O75204 238 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 TSPAN9O75954 239 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 MAOAP21397 527 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 P2RX1P51575 399 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 BLVRAP53004 296 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 KLHL26Q53HC5 615 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 METTL11BQ5VVY1 283 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 LIPNQ5VXI9 398 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 FAAP20Q6NZ36 180 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 SLC16A9Q7RTY1 509 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 JAZF1Q86VZ6 243 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 MCATQ8IVS2 390 aaKnown RBP17.54■□□□□ 0.4
VPS28-213ENST00000530983 C19orf47Q8N9M1 422 aaKnown RBP17.54■□□□□ 0.4
VPS28-213ENST00000530983 LRRC75AQ8NAA5 344 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 LHFPL5Q8TAF8 219 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 HAVCR1Q96D42 359 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 LCORQ96JN0 433 aaPredicted RBP17.54■□□□□ 0.4
VPS28-213ENST00000530983 CLEC4MQ9H2X3 399 aaPredicted RBP17.54■□□□□ 0.4
VPS28-213ENST00000530983 FKRPQ9H9S5 495 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 FRRS1LQ9P0K9 344 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 HIF3AQ9Y2N7 669 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 ELOA3DA6NLF2 546 aaPredicted RBP17.53■□□□□ 0.4
VPS28-213ENST00000530983 BET1O15155 118 aa17.53■□□□□ 0.4
VPS28-213ENST00000530983 KHDRBS3O75525 346 aaKnown RBP17.53■□□□□ 0.4
VPS28-213ENST00000530983 RAB40ALP0C0E4 278 aa17.53■□□□□ 0.4
VPS28-213ENST00000530983 CALCBP10092 127 aa17.53■□□□□ 0.4
VPS28-213ENST00000530983 CDK2P24941 298 aa17.53■□□□□ 0.4
VPS28-213ENST00000530983 LCN1P31025 176 aa17.53■□□□□ 0.4
VPS28-213ENST00000530983 RAD52P43351 418 aa17.53■□□□□ 0.4
VPS28-213ENST00000530983 SLC25A1P53007 311 aa17.53■□□□□ 0.4
VPS28-213ENST00000530983 RPL6Q02878 288 aaKnown RBP17.53■□□□□ 0.4
VPS28-213ENST00000530983 HHEXQ03014 270 aa17.53■□□□□ 0.4
VPS28-213ENST00000530983 ZNF74Q16587 644 aa17.53■□□□□ 0.4
VPS28-213ENST00000530983 ELOA3BQ3SY89 546 aa17.53■□□□□ 0.4
VPS28-213ENST00000530983 Q499Y3 187 aa17.53■□□□□ 0.4
VPS28-213ENST00000530983 OLFML2AQ68BL7 652 aa17.53■□□□□ 0.4
VPS28-213ENST00000530983 FTMTQ8N4E7 242 aa17.53■□□□□ 0.4
VPS28-213ENST00000530983 LSM14AQ8ND56 463 aaKnown RBP17.53■□□□□ 0.4
VPS28-213ENST00000530983 ELOA3Q8NG57 546 aa17.53■□□□□ 0.4
VPS28-213ENST00000530983 C1orf216Q8TAB5 229 aa17.53■□□□□ 0.4
VPS28-213ENST00000530983 RAB40AQ8WXH6 277 aa17.53■□□□□ 0.4
VPS28-213ENST00000530983 SEC22CQ9BRL7 303 aa17.53■□□□□ 0.4
VPS28-213ENST00000530983 PRTFDC1Q9NRG1 225 aa17.53■□□□□ 0.4
VPS28-213ENST00000530983 DCTN6O00399 190 aa17.53■□□□□ 0.4
VPS28-213ENST00000530983 OIP5O43482 229 aa17.53■□□□□ 0.4
VPS28-213ENST00000530983 ABHD16AO95870 558 aa17.53■□□□□ 0.4
VPS28-213ENST00000530983 CD14P08571 375 aa17.53■□□□□ 0.4
VPS28-213ENST00000530983 GRK6P43250 576 aa17.53■□□□□ 0.4
VPS28-213ENST00000530983 FUT7Q11130 342 aa17.53■□□□□ 0.4
VPS28-213ENST00000530983 CD226Q15762 336 aa17.53■□□□□ 0.4
VPS28-213ENST00000530983 CPEB4Q17RY0 729 aaKnown RBP eCLIP17.53■□□□□ 0.4
VPS28-213ENST00000530983 PRSS42Q7Z5A4 293 aa17.53■□□□□ 0.4
VPS28-213ENST00000530983 ATG4DQ86TL0 474 aaPredicted RBP17.53■□□□□ 0.4
VPS28-213ENST00000530983 GPAT4Q86UL3 456 aa17.53■□□□□ 0.4
VPS28-213ENST00000530983 ZNF595Q8IYB9 648 aa17.53■□□□□ 0.4
VPS28-213ENST00000530983 ZNF615Q8N8J6 731 aa17.53■□□□□ 0.4
VPS28-213ENST00000530983 OR5AK2Q8NH90 309 aa17.53■□□□□ 0.4
VPS28-213ENST00000530983 HMGB4Q8WW32 186 aa17.53■□□□□ 0.4
VPS28-213ENST00000530983 AIFM2Q9BRQ8 373 aa17.53■□□□□ 0.4
VPS28-213ENST00000530983 NOX3Q9HBY0 568 aa17.53■□□□□ 0.4
VPS28-213ENST00000530983 TCF7L1Q9HCS4 588 aa17.53■□□□□ 0.4
VPS28-213ENST00000530983 MRPS33Q9Y291 106 aaKnown RBP17.53■□□□□ 0.4
VPS28-213ENST00000530983 OR5K4A6NMS3 321 aa17.52■□□□□ 0.4
VPS28-213ENST00000530983 TACSTD2P09758 323 aa17.52■□□□□ 0.4
VPS28-213ENST00000530983 DCTDP32321 178 aa17.52■□□□□ 0.4
VPS28-213ENST00000530983 SOX2P48431 317 aa17.52■□□□□ 0.4
VPS28-213ENST00000530983 EPHA4P54764 986 aa17.52■□□□□ 0.4
VPS28-213ENST00000530983 ALKBH1Q13686 389 aaKnown RBP17.52■□□□□ 0.4
VPS28-213ENST00000530983 LINC00303Q3SY05 128 aa17.52■□□□□ 0.4
VPS28-213ENST00000530983 SLC25A25Q6KCM7 469 aa17.52■□□□□ 0.4
VPS28-213ENST00000530983 GLDNQ6ZMI3 551 aaPredicted RBP17.52■□□□□ 0.4
VPS28-213ENST00000530983 FAM220AQ7Z4H9 259 aa17.52■□□□□ 0.4
VPS28-213ENST00000530983 TAF8Q7Z7C8 310 aa17.52■□□□□ 0.4
VPS28-213ENST00000530983 ZSCAN1Q8NBB4 408 aa17.52■□□□□ 0.4
VPS28-213ENST00000530983 DNAAF1Q8NEP3 725 aa17.52■□□□□ 0.4
VPS28-213ENST00000530983 MIB2Q96AX9 1013 aa17.52■□□□□ 0.4
VPS28-213ENST00000530983 MRI1Q9BV20 369 aa17.52■□□□□ 0.4
VPS28-213ENST00000530983 HS3ST3A1Q9Y663 406 aa17.52■□□□□ 0.4
VPS28-213ENST00000530983 FKBP7Q9Y680 259 aa17.52■□□□□ 0.4
VPS28-213ENST00000530983 CLPSP04118 112 aa17.52■□□□□ 0.39
VPS28-213ENST00000530983 HOXD4P09016 255 aaPredicted RBP17.52■□□□□ 0.39
VPS28-213ENST00000530983 SDHAP31040 664 aa17.52■□□□□ 0.39
VPS28-213ENST00000530983 ART1P52961 327 aa17.52■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms