RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 TAS2R43P59537 309 aa18.66■□□□□ 0.58
VPS28-209ENST00000528142 Q0VFX4 171 aa18.66■□□□□ 0.58
VPS28-209ENST00000528142 MFSD13AQ14CX5 517 aa18.66■□□□□ 0.58
VPS28-209ENST00000528142 CDONQ4KMG0 1287 aa18.66■□□□□ 0.58
VPS28-209ENST00000528142 PRAMEF20Q5VT98 475 aa18.66■□□□□ 0.58
VPS28-209ENST00000528142 TMEM91Q6ZNR0 172 aa18.66■□□□□ 0.58
VPS28-209ENST00000528142 DND1Q8IYX4 353 aaKnown RBP18.66■□□□□ 0.58
VPS28-209ENST00000528142 ZNF511Q8NB15 262 aa18.66■□□□□ 0.58
VPS28-209ENST00000528142 SYT14Q8NB59 555 aa18.66■□□□□ 0.58
VPS28-209ENST00000528142 OR2T4Q8NH00 348 aa18.66■□□□□ 0.58
VPS28-209ENST00000528142 ANGPTL4Q9BY76 406 aa18.66■□□□□ 0.58
VPS28-209ENST00000528142 NUAK2Q9H093 628 aa18.66■□□□□ 0.58
VPS28-209ENST00000528142 TXNIPQ9H3M7 391 aa18.66■□□□□ 0.58
VPS28-209ENST00000528142 SRA1Q9HD15 236 aaKnown RBP18.66■□□□□ 0.58
VPS28-209ENST00000528142 PEX16Q9Y5Y5 336 aa18.66■□□□□ 0.58
VPS28-209ENST00000528142 DMXL1Q9Y485 3027 aa18.66■□□□□ 0.58
VPS28-209ENST00000528142 OR6A2O95222 327 aa18.65■□□□□ 0.58
VPS28-209ENST00000528142 HPP00738 406 aa18.65■□□□□ 0.58
VPS28-209ENST00000528142 RENP00797 406 aa18.65■□□□□ 0.58
VPS28-209ENST00000528142 CLEC2LP0C7M8 214 aa18.65■□□□□ 0.58
VPS28-209ENST00000528142 IMPDH2P12268 514 aa18.65■□□□□ 0.58
VPS28-209ENST00000528142 ICAM2P13598 275 aa18.65■□□□□ 0.58
VPS28-209ENST00000528142 SDC2P34741 201 aa18.65■□□□□ 0.58
VPS28-209ENST00000528142 ACTA2P62736 377 aa18.65■□□□□ 0.58
VPS28-209ENST00000528142 ACTG2P63267 376 aa18.65■□□□□ 0.58
VPS28-209ENST00000528142 ZP4Q12836 540 aa18.65■□□□□ 0.58
VPS28-209ENST00000528142 EEF1A1P5Q5VTE0 462 aa18.65■□□□□ 0.58
VPS28-209ENST00000528142 SCAIQ8N9R8 606 aa18.65■□□□□ 0.58
VPS28-209ENST00000528142 PAQR8Q8TEZ7 354 aa18.65■□□□□ 0.58
VPS28-209ENST00000528142 SNX18Q96RF0 628 aa18.65■□□□□ 0.58
VPS28-209ENST00000528142 PROK2Q9HC23 129 aa18.65■□□□□ 0.58
VPS28-209ENST00000528142 QPCTLQ9NXS2 382 aa18.65■□□□□ 0.58
VPS28-209ENST00000528142 GALNT8Q9NY28 637 aa18.65■□□□□ 0.58
VPS28-209ENST00000528142 CFAP54Q96N23 3096 aa18.65■□□□□ 0.58
VPS28-209ENST00000528142 MS4A18H0YCH9 400 aa18.65■□□□□ 0.58
VPS28-209ENST00000528142 ARHGEF9O43307 516 aa18.65■□□□□ 0.58
VPS28-209ENST00000528142 FZD7O75084 574 aa18.65■□□□□ 0.58
VPS28-209ENST00000528142 PLGP00747 810 aaPredicted RBP18.65■□□□□ 0.58
VPS28-209ENST00000528142 ACVR1BP36896 505 aa18.65■□□□□ 0.58
VPS28-209ENST00000528142 CHAF1BQ13112 559 aa18.65■□□□□ 0.58
VPS28-209ENST00000528142 INSL4Q14641 139 aa18.65■□□□□ 0.58
VPS28-209ENST00000528142 OR7A5Q15622 319 aa18.65■□□□□ 0.58
VPS28-209ENST00000528142 MS4A18Q3C1V0 323 aa18.65■□□□□ 0.58
VPS28-209ENST00000528142 TP53I3Q53FA7 332 aa18.65■□□□□ 0.58
VPS28-209ENST00000528142 HES3Q5TGS1 186 aa18.65■□□□□ 0.58
VPS28-209ENST00000528142 DMKNQ6E0U4 476 aaPredicted RBP18.65■□□□□ 0.58
VPS28-209ENST00000528142 TIGD4Q8IY51 512 aa18.65■□□□□ 0.58
VPS28-209ENST00000528142 KCNS3Q9BQ31 491 aa18.65■□□□□ 0.58
VPS28-209ENST00000528142 SYT4Q9H2B2 425 aa18.65■□□□□ 0.58
VPS28-209ENST00000528142 RYDENQ9NUL5 291 aaKnown RBP18.65■□□□□ 0.58
VPS28-209ENST00000528142 ST6GALNAC2Q9UJ37 374 aa18.65■□□□□ 0.58
VPS28-209ENST00000528142 MAGEB4O15481 346 aaPredicted RBP18.64■□□□□ 0.57
VPS28-209ENST00000528142 CCL3P10147 92 aa18.64■□□□□ 0.57
VPS28-209ENST00000528142 RPS15P62841 145 aaKnown RBP18.64■□□□□ 0.57
VPS28-209ENST00000528142 HSF2Q03933 536 aa18.64■□□□□ 0.57
VPS28-209ENST00000528142 MXD1Q05195 221 aa18.64■□□□□ 0.57
VPS28-209ENST00000528142 TMEM164Q5U3C3 297 aa18.64■□□□□ 0.57
VPS28-209ENST00000528142 TUBA3EQ6PEY2 450 aa18.64■□□□□ 0.57
VPS28-209ENST00000528142 H1FNTQ75WM6 255 aaPredicted RBP18.64■□□□□ 0.57
VPS28-209ENST00000528142 SLC16A9Q7RTY1 509 aa18.64■□□□□ 0.57
VPS28-209ENST00000528142 MARCH9Q86YJ5 346 aa18.64■□□□□ 0.57
VPS28-209ENST00000528142 PM20D2Q8IYS1 436 aa18.64■□□□□ 0.57
VPS28-209ENST00000528142 ESX1Q8N693 406 aa18.64■□□□□ 0.57
VPS28-209ENST00000528142 OR4K17Q8NGC6 315 aa18.64■□□□□ 0.57
VPS28-209ENST00000528142 PELI1Q96FA3 418 aa18.64■□□□□ 0.57
VPS28-209ENST00000528142 TTTY10Q9BZA0 68 aa18.64■□□□□ 0.57
VPS28-209ENST00000528142 TPK1Q9H3S4 243 aa18.64■□□□□ 0.57
VPS28-209ENST00000528142 POLHQ9Y253 713 aa18.64■□□□□ 0.57
VPS28-209ENST00000528142 LIPT2A6NK58 231 aa18.63■□□□□ 0.57
VPS28-209ENST00000528142 CTDSP2O14595 271 aa18.63■□□□□ 0.57
VPS28-209ENST00000528142 XKRYO14609 159 aa18.63■□□□□ 0.57
VPS28-209ENST00000528142 TERTO14746 1132 aaKnown RBP18.63■□□□□ 0.57
VPS28-209ENST00000528142 S100A5P33763 92 aa18.63■□□□□ 0.57
VPS28-209ENST00000528142 TGM4P49221 684 aa18.63■□□□□ 0.57
VPS28-209ENST00000528142 PUDPQ08623 228 aa18.63■□□□□ 0.57
VPS28-209ENST00000528142 H3F3CQ6NXT2 135 aa18.63■□□□□ 0.57
VPS28-209ENST00000528142 ARL9Q6T311 187 aa18.63■□□□□ 0.57
VPS28-209ENST00000528142 RPTNQ6XPR3 784 aa18.63■□□□□ 0.57
VPS28-209ENST00000528142 PLCZ1Q86YW0 608 aa18.63■□□□□ 0.57
VPS28-209ENST00000528142 FNDC8Q8TC99 324 aa18.63■□□□□ 0.57
VPS28-209ENST00000528142 THAP4Q8WY91 577 aa18.63■□□□□ 0.57
VPS28-209ENST00000528142 NXPE2Q96DL1 559 aa18.63■□□□□ 0.57
VPS28-209ENST00000528142 PGLYRP3Q96LB9 341 aa18.63■□□□□ 0.57
VPS28-209ENST00000528142 CCDC86Q9H6F5 360 aaKnown RBP18.63■□□□□ 0.57
VPS28-209ENST00000528142 PTGES2Q9H7Z7 377 aa18.63■□□□□ 0.57
VPS28-209ENST00000528142 SERINC1Q9NRX5 453 aa18.63■□□□□ 0.57
VPS28-209ENST00000528142 VSX1Q9NZR4 365 aaPredicted RBP18.63■□□□□ 0.57
VPS28-209ENST00000528142 CRNNQ9UBG3 495 aaPredicted RBP18.63■□□□□ 0.57
VPS28-209ENST00000528142 IQCMA0A1B0GVH7 501 aa18.63■□□□□ 0.57
VPS28-209ENST00000528142 PRSS37A4D1T9 235 aa18.63■□□□□ 0.57
VPS28-209ENST00000528142 CD8B2A6NJW9 211 aa18.63■□□□□ 0.57
VPS28-209ENST00000528142 H3BML4 177 aa18.63■□□□□ 0.57
VPS28-209ENST00000528142 TAF4O00268 1085 aa18.63■□□□□ 0.57
VPS28-209ENST00000528142 OGG1O15527 345 aa18.63■□□□□ 0.57
VPS28-209ENST00000528142 RGS9O75916 674 aaPredicted RBP18.63■□□□□ 0.57
VPS28-209ENST00000528142 TFPIP10646 304 aa18.63■□□□□ 0.57
VPS28-209ENST00000528142 CD8BP10966 210 aa18.63■□□□□ 0.57
VPS28-209ENST00000528142 HLA-DOBP13765 273 aa18.63■□□□□ 0.57
VPS28-209ENST00000528142 F8A1P23610 371 aa18.63■□□□□ 0.57
VPS28-209ENST00000528142 PPP5CP53041 499 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms