RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 FNDC9Q8TBE3 224 aa10.41□□□□□ -0.74
TCOF1-211ENST00000513346 SMIM4Q8WVI0 70 aa10.41□□□□□ -0.74
TCOF1-211ENST00000513346 SMIM3Q9BZL3 60 aa10.41□□□□□ -0.74
TCOF1-211ENST00000513346 CHST8Q9H2A9 424 aa10.41□□□□□ -0.74
TCOF1-211ENST00000513346 SLC25A19Q9HC21 320 aa10.41□□□□□ -0.74
TCOF1-211ENST00000513346 ENTPD2Q9Y5L3 495 aa10.41□□□□□ -0.74
TCOF1-211ENST00000513346 PUS1Q9Y606 427 aaKnown RBP eCLIP10.41□□□□□ -0.74
TCOF1-211ENST00000513346 A0A087WUU8 490 aa10.4□□□□□ -0.74
TCOF1-211ENST00000513346 EIF2B1Q14232 305 aaKnown RBP10.4□□□□□ -0.74
TCOF1-211ENST00000513346 FAM74A1Q5RGS3 127 aa10.4□□□□□ -0.74
TCOF1-211ENST00000513346 UQCC3Q6UW78 93 aa10.4□□□□□ -0.74
TCOF1-211ENST00000513346 PHF7Q9BWX1 381 aaPredicted RBP10.4□□□□□ -0.74
TCOF1-211ENST00000513346 CCL26Q9Y258 94 aa10.4□□□□□ -0.74
TCOF1-211ENST00000513346 SHANK3Q9BYB0 1731 aa10.4□□□□□ -0.74
TCOF1-211ENST00000513346 GPR89AB7ZAQ6 455 aa10.4□□□□□ -0.74
TCOF1-211ENST00000513346 AQP8O94778 261 aa10.4□□□□□ -0.74
TCOF1-211ENST00000513346 C1orf105O95561 183 aa10.4□□□□□ -0.74
TCOF1-211ENST00000513346 GPR89BP0CG08 455 aa10.4□□□□□ -0.74
TCOF1-211ENST00000513346 CNR1P21554 472 aa10.4□□□□□ -0.74
TCOF1-211ENST00000513346 NSDHLQ15738 373 aa10.4□□□□□ -0.74
TCOF1-211ENST00000513346 C6orf132Q5T0Z8 1188 aa10.4□□□□□ -0.74
TCOF1-211ENST00000513346 MARVELD3Q96A59 401 aa10.4□□□□□ -0.74
TCOF1-211ENST00000513346 PNPLA2Q96AD5 504 aa10.4□□□□□ -0.74
TCOF1-211ENST00000513346 PITHD1Q9GZP4 211 aaPredicted RBP10.4□□□□□ -0.74
TCOF1-211ENST00000513346 LRFN1Q9P244 771 aa10.4□□□□□ -0.74
TCOF1-211ENST00000513346 COL5A3P25940 1745 aaPredicted RBP10.4□□□□□ -0.74
TCOF1-211ENST00000513346 LOC105371267A0A1B0GV96 52 aa10.4□□□□□ -0.74
TCOF1-211ENST00000513346 CSNK2A1P68400 391 aaPredicted RBP10.4□□□□□ -0.74
TCOF1-211ENST00000513346 PLA2G7Q13093 441 aa10.4□□□□□ -0.74
TCOF1-211ENST00000513346 TCEAL6Q6IPX3 200 aa10.4□□□□□ -0.74
TCOF1-211ENST00000513346 RFLNAQ6ZTI6 216 aa10.4□□□□□ -0.74
TCOF1-211ENST00000513346 CSNK2A3Q8NEV1 391 aa10.4□□□□□ -0.74
TCOF1-211ENST00000513346 SLC5A7Q9GZV3 580 aa10.4□□□□□ -0.74
TCOF1-211ENST00000513346 SLCO5A1Q9H2Y9 848 aa10.4□□□□□ -0.74
TCOF1-211ENST00000513346 B3GAT2Q9NPZ5 323 aa10.4□□□□□ -0.74
TCOF1-211ENST00000513346 HINT3Q9NQE9 182 aaKnown RBP10.4□□□□□ -0.74
TCOF1-211ENST00000513346 HS3ST2Q9Y278 367 aa10.4□□□□□ -0.74
TCOF1-211ENST00000513346 HIF3AQ9Y2N7 669 aa10.4□□□□□ -0.74
TCOF1-211ENST00000513346 DLEC1Q9Y238 1755 aa10.4□□□□□ -0.74
TCOF1-211ENST00000513346 COL24A1Q17RW2 1714 aa10.4□□□□□ -0.74
TCOF1-211ENST00000513346 ZNF705FA8MVS1 300 aaPredicted RBP10.4□□□□□ -0.75
TCOF1-211ENST00000513346 RAD1O60671 282 aa10.4□□□□□ -0.75
TCOF1-211ENST00000513346 ZNF705DP0CH99 300 aaPredicted RBP10.4□□□□□ -0.75
TCOF1-211ENST00000513346 ZNF705BP0CI00 300 aaPredicted RBP10.4□□□□□ -0.75
TCOF1-211ENST00000513346 RPS2P15880 293 aaKnown RBP10.4□□□□□ -0.75
TCOF1-211ENST00000513346 TEAD1P28347 426 aa10.4□□□□□ -0.75
TCOF1-211ENST00000513346 TNFRSF4P43489 277 aa10.4□□□□□ -0.75
TCOF1-211ENST00000513346 COMTD1Q86VU5 262 aa10.4□□□□□ -0.75
TCOF1-211ENST00000513346 SGPP2Q8IWX5 399 aa10.4□□□□□ -0.75
TCOF1-211ENST00000513346 CMTM4Q8IZR5 234 aa10.4□□□□□ -0.75
TCOF1-211ENST00000513346 TMEM99Q8N816 258 aa10.4□□□□□ -0.75
TCOF1-211ENST00000513346 CDRT4Q8N9R6 151 aa10.4□□□□□ -0.75
TCOF1-211ENST00000513346 CDS1Q92903 461 aa10.4□□□□□ -0.75
TCOF1-211ENST00000513346 DVL3Q92997 716 aaPredicted RBP10.4□□□□□ -0.75
TCOF1-211ENST00000513346 RAB3CQ96E17 227 aa10.4□□□□□ -0.75
TCOF1-211ENST00000513346 LPAR4Q99677 370 aa10.4□□□□□ -0.75
TCOF1-211ENST00000513346 MIXL1Q9H2W2 232 aa10.4□□□□□ -0.75
TCOF1-211ENST00000513346 GIMAP1-GIMAP5A0A087WTJ2 511 aa10.39□□□□□ -0.75
TCOF1-211ENST00000513346 ABLIM3O94929 683 aa10.39□□□□□ -0.75
TCOF1-211ENST00000513346 IL5P05113 134 aa10.39□□□□□ -0.75
TCOF1-211ENST00000513346 SBK2P0C263 348 aa10.39□□□□□ -0.75
TCOF1-211ENST00000513346 UBE2KP61086 200 aa10.39□□□□□ -0.75
TCOF1-211ENST00000513346 SMAD4Q13485 552 aaKnown RBP10.39□□□□□ -0.75
TCOF1-211ENST00000513346 GSG1Q2KHT4 349 aa10.39□□□□□ -0.75
TCOF1-211ENST00000513346 SOHLH1Q5JUK2 328 aa10.39□□□□□ -0.75
TCOF1-211ENST00000513346 TMEM225Q6GV28 225 aa10.39□□□□□ -0.75
TCOF1-211ENST00000513346 CCDC71Q8IV32 467 aaPredicted RBP10.39□□□□□ -0.75
TCOF1-211ENST00000513346 ZNF440Q8IYI8 595 aa10.39□□□□□ -0.75
TCOF1-211ENST00000513346 OR2A12Q8NGT7 310 aa10.39□□□□□ -0.75
TCOF1-211ENST00000513346 SLC2A12Q8TD20 617 aa10.39□□□□□ -0.75
TCOF1-211ENST00000513346 ASB13Q8WXK3 278 aa10.39□□□□□ -0.75
TCOF1-211ENST00000513346 GPR137Q96N19 417 aa10.39□□□□□ -0.75
TCOF1-211ENST00000513346 TEAD3Q99594 435 aa10.39□□□□□ -0.75
TCOF1-211ENST00000513346 BARHL1Q9BZE3 327 aa10.39□□□□□ -0.75
TCOF1-211ENST00000513346 OBP2AQ9NY56 170 aa10.39□□□□□ -0.75
TCOF1-211ENST00000513346 SSC5DA1L4H1 1573 aa10.39□□□□□ -0.75
TCOF1-211ENST00000513346 FAM230AA0A1W2PPH8 454 aa10.39□□□□□ -0.75
TCOF1-211ENST00000513346 OR5H14A6NHG9 310 aa10.39□□□□□ -0.75
TCOF1-211ENST00000513346 CLEC3AO75596 197 aa10.39□□□□□ -0.75
TCOF1-211ENST00000513346 CBX7O95931 251 aa10.39□□□□□ -0.75
TCOF1-211ENST00000513346 CALCBP10092 127 aa10.39□□□□□ -0.75
TCOF1-211ENST00000513346 PRPH2P23942 346 aa10.39□□□□□ -0.75
TCOF1-211ENST00000513346 RPS15P62841 145 aaKnown RBP10.39□□□□□ -0.75
TCOF1-211ENST00000513346 GLYR1Q49A26 553 aaPredicted RBP10.39□□□□□ -0.75
TCOF1-211ENST00000513346 GLDNQ6ZMI3 551 aaPredicted RBP10.39□□□□□ -0.75
TCOF1-211ENST00000513346 CYHR1Q6ZMK1 362 aa10.39□□□□□ -0.75
TCOF1-211ENST00000513346 ADAMTS18Q8TE60 1221 aa10.39□□□□□ -0.75
TCOF1-211ENST00000513346 YIPF5Q969M3 257 aa10.39□□□□□ -0.75
TCOF1-211ENST00000513346 POFUT1Q9H488 388 aa10.39□□□□□ -0.75
TCOF1-211ENST00000513346 AUNIPQ9H7T9 357 aa10.39□□□□□ -0.75
TCOF1-211ENST00000513346 ADAM18Q9Y3Q7 739 aa10.39□□□□□ -0.75
TCOF1-211ENST00000513346 HMGA1P17096 107 aaKnown RBP10.39□□□□□ -0.75
TCOF1-211ENST00000513346 ACHEP22303 614 aa10.39□□□□□ -0.75
TCOF1-211ENST00000513346 HOXA1P49639 335 aaPredicted RBP10.39□□□□□ -0.75
TCOF1-211ENST00000513346 MECP2P51608 486 aaKnown RBP10.39□□□□□ -0.75
TCOF1-211ENST00000513346 DEFB133Q30KQ1 61 aa10.39□□□□□ -0.75
TCOF1-211ENST00000513346 C1orf94Q6P1W5 598 aa10.39□□□□□ -0.75
TCOF1-211ENST00000513346 SLC22A25Q6T423 547 aa10.39□□□□□ -0.75
TCOF1-211ENST00000513346 VRK3Q8IV63 474 aa10.39□□□□□ -0.75
TCOF1-211ENST00000513346 ACOT4Q8N9L9 421 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms