RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 THEM5Q8N1Q8 247 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 UBE2J2Q8N2K1 259 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 GVQW1Q8N7I0 195 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 BEST4Q8NFU0 473 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 PSMA8Q8TAA3 256 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 AGR3Q8TD06 166 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 AP3S1Q92572 193 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 RPL3LQ92901 407 aaKnown RBP4.54□□□□□ -1.68
USP40-213ENST00000483216 PEX13Q92968 403 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 KIAA1143Q96AT1 154 aaPredicted RBP4.54□□□□□ -1.68
USP40-213ENST00000483216 CERS2Q96G23 380 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 GUCD1Q96NT3 240 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 MCEEQ96PE7 176 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 RNF157Q96PX1 679 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 KLF6Q99612 283 aaPredicted RBP4.54□□□□□ -1.68
USP40-213ENST00000483216 APOL2Q9BQE5 337 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 FUNDC2Q9BWH2 189 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 NUSAP1Q9BXS6 441 aaKnown RBP4.54□□□□□ -1.68
USP40-213ENST00000483216 C6orf62Q9GZU0 229 aaPredicted RBP4.54□□□□□ -1.68
USP40-213ENST00000483216 DEFB129Q9H1M3 183 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 PPA2Q9H2U2 334 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 LIME1Q9H400 295 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 DSN1Q9H410 356 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 RANBP3Q9H6Z4 567 aaPredicted RBP4.54□□□□□ -1.68
USP40-213ENST00000483216 TDRD3Q9H7E2 651 aaKnown RBP4.54□□□□□ -1.68
USP40-213ENST00000483216 MEAF6Q9HAF1 191 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 SMOXQ9NWM0 555 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 EMC3Q9P0I2 261 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 MBD2Q9UBB5 411 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 PSORS1C1Q9UIG5 152 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 FBXO5Q9UKT4 447 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 CDH9Q9ULB4 789 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 ING4Q9UNL4 249 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 OR1A2Q9Y585 309 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 A0A075B6Q4 140 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 TEX48A0A1B0GUV7 120 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 A0A1W2PRG6 482 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 FAM170AA1A519 330 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 EFCAB9A8MZ26 197 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 E9PAM4 449 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 G3V2T6 193 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 KPNA3O00505 521 aaPredicted RBP4.53□□□□□ -1.68
USP40-213ENST00000483216 YKT6O15498 198 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 IGKV3-15P01624 115 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 PIGRP01833 764 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 HLA-DRAP01903 254 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 PGK2P07205 417 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 ETS1P14921 441 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 HLA-DMAP28067 261 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 SDC4P31431 198 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 YWHABP31946 246 aaKnown RBP4.53□□□□□ -1.68
USP40-213ENST00000483216 TRIM23P36406 574 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 TALDO1P37837 337 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 CASP3P42574 277 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 RPL34P49207 117 aaKnown RBP4.53□□□□□ -1.68
USP40-213ENST00000483216 SLC26A2P50443 739 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 SERPINH1P50454 418 aaKnown RBP4.53□□□□□ -1.68
USP40-213ENST00000483216 CDH6P55285 790 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 POU6F1Q14863 301 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 SLC17A1Q14916 467 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 PCK2Q16822 640 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 SMU1Q2TAY7 513 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 AGKQ53H12 422 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 CYBRD1Q53TN4 286 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 HACD4Q5VWC8 232 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 VITQ6UXI7 678 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 TCTE3Q8IZS6 198 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 SLC7A5P1Q8MH63 180 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 BPIFB6Q8NFQ5 453 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 LHFPL5Q8TAF8 219 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 MAGEE2Q8TD90 523 aaPredicted RBP4.53□□□□□ -1.68
USP40-213ENST00000483216 FAM151AQ8WW52 585 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 TMIGD2Q96BF3 282 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 SPATA13Q96N96 652 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 VPS35Q96QK1 796 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 RAB40CQ96S21 281 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 S1PR3Q99500 378 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 ZBTB18Q99592 522 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 TMEM246Q9BRR3 403 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 TRIM62Q9BVG3 475 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 ZNF717Q9BY31 904 aaPredicted RBP4.53□□□□□ -1.68
USP40-213ENST00000483216 C2orf40Q9H1Z8 148 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 OR51B5Q9H339 312 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 RHOJQ9H4E5 214 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 ZNF385DQ9H6B1 395 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 NT5DC2Q9H857 520 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 FAM49BQ9NUQ9 324 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 DUS2Q9NX74 493 aaKnown RBP4.53□□□□□ -1.68
USP40-213ENST00000483216 FBXO7Q9Y3I1 522 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 NAALAD2Q9Y3Q0 740 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 ASB4Q9Y574 426 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 N6AMT1Q9Y5N5 214 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 FER1L5A0AVI2 2057 aa4.53□□□□□ -1.68
USP40-213ENST00000483216 KRBOX1C9JBD0 128 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 F8VP50 259 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 J3QRK9 145 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 SLC7A4O43246 635 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 KIAA0513O60268 411 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 CSO75390 466 aaKnown RBP4.52□□□□□ -1.69
USP40-213ENST00000483216 OR7A10O76100 309 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms