RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 CST1P01037 141 aa10.55□□□□□ -0.72
VPS13D-204ENST00000469054 COX6B1P14854 86 aa10.55□□□□□ -0.72
VPS13D-204ENST00000469054 IFNGR1P15260 489 aa10.55□□□□□ -0.72
VPS13D-204ENST00000469054 PSMB1P20618 241 aaKnown RBP10.55□□□□□ -0.72
VPS13D-204ENST00000469054 IGHV1-2P23083 117 aa10.55□□□□□ -0.72
VPS13D-204ENST00000469054 KIR2DL3P43628 341 aa10.55□□□□□ -0.72
VPS13D-204ENST00000469054 RPS4XP62701 263 aaKnown RBP10.55□□□□□ -0.72
VPS13D-204ENST00000469054 FAPQ12884 760 aa10.55□□□□□ -0.72
VPS13D-204ENST00000469054 PPP1R8Q12972 351 aaKnown RBP10.55□□□□□ -0.72
VPS13D-204ENST00000469054 ITGADQ13349 1161 aa10.55□□□□□ -0.72
VPS13D-204ENST00000469054 FHL1Q13642 323 aa10.55□□□□□ -0.72
VPS13D-204ENST00000469054 CCNIQ14094 377 aa10.55□□□□□ -0.72
VPS13D-204ENST00000469054 GK3PQ14409 553 aa10.55□□□□□ -0.72
VPS13D-204ENST00000469054 ALG10Q5BKT4 473 aa10.55□□□□□ -0.72
VPS13D-204ENST00000469054 SFRP5Q5T4F7 317 aa10.55□□□□□ -0.72
VPS13D-204ENST00000469054 SLC35D2Q76EJ3 337 aa10.55□□□□□ -0.72
VPS13D-204ENST00000469054 CXorf67Q86X51 503 aaPredicted RBP10.55□□□□□ -0.72
VPS13D-204ENST00000469054 LINC00471Q8N535 108 aa10.55□□□□□ -0.72
VPS13D-204ENST00000469054 POMGNT2Q8NAT1 580 aa10.55□□□□□ -0.72
VPS13D-204ENST00000469054 OR4C15Q8NGM1 316 aa10.55□□□□□ -0.72
VPS13D-204ENST00000469054 OR13C2Q8NGS9 318 aa10.55□□□□□ -0.72
VPS13D-204ENST00000469054 LINC01560Q8TB33 94 aa10.55□□□□□ -0.72
VPS13D-204ENST00000469054 TXNDC15Q96J42 360 aa10.55□□□□□ -0.72
VPS13D-204ENST00000469054 EMC6Q9BV81 110 aa10.55□□□□□ -0.72
VPS13D-204ENST00000469054 LINC00470Q9BZP3 86 aa10.55□□□□□ -0.72
VPS13D-204ENST00000469054 REEP1Q9H902 201 aa10.55□□□□□ -0.72
VPS13D-204ENST00000469054 SLC24A3Q9HC58 644 aa10.55□□□□□ -0.72
VPS13D-204ENST00000469054 INIPQ9NRY2 104 aa10.55□□□□□ -0.72
VPS13D-204ENST00000469054 SLC7A10Q9NS82 523 aa10.55□□□□□ -0.72
VPS13D-204ENST00000469054 MALT1Q9UDY8 824 aa10.55□□□□□ -0.72
VPS13D-204ENST00000469054 NDRG3Q9UGV2 375 aa10.55□□□□□ -0.72
VPS13D-204ENST00000469054 SAMHD1Q9Y3Z3 626 aaKnown RBP10.55□□□□□ -0.72
VPS13D-204ENST00000469054 U3KQV3 271 aa10.55□□□□□ -0.72
VPS13D-204ENST00000469054 A0A1W2PRG6 482 aa10.54□□□□□ -0.72
VPS13D-204ENST00000469054 PDLIM1O00151 329 aa10.54□□□□□ -0.72
VPS13D-204ENST00000469054 GNGT2O14610 69 aa10.54□□□□□ -0.72
VPS13D-204ENST00000469054 CLOCKO15516 846 aa10.54□□□□□ -0.72
VPS13D-204ENST00000469054 HNRNPRO43390 633 aaKnown RBP10.54□□□□□ -0.72
VPS13D-204ENST00000469054 KLF4O43474 513 aa10.54□□□□□ -0.72
VPS13D-204ENST00000469054 PTP4A3O75365 173 aa10.54□□□□□ -0.72
VPS13D-204ENST00000469054 SLC43A1O75387 559 aa10.54□□□□□ -0.72
VPS13D-204ENST00000469054 UPK3AO75631 287 aa10.54□□□□□ -0.72
VPS13D-204ENST00000469054 KRT33AO76009 404 aa10.54□□□□□ -0.72
VPS13D-204ENST00000469054 CCNB2O95067 398 aa10.54□□□□□ -0.72
VPS13D-204ENST00000469054 BCL10O95999 233 aa10.54□□□□□ -0.72
VPS13D-204ENST00000469054 F13BP05160 661 aa10.54□□□□□ -0.72
VPS13D-204ENST00000469054 COX5AP20674 150 aa10.54□□□□□ -0.72
VPS13D-204ENST00000469054 CCKARP32238 428 aa10.54□□□□□ -0.72
VPS13D-204ENST00000469054 BIDP55957 195 aa10.54□□□□□ -0.72
VPS13D-204ENST00000469054 PRPS1P60891 318 aa10.54□□□□□ -0.72
VPS13D-204ENST00000469054 ZBED5Q49AG3 693 aa10.54□□□□□ -0.72
VPS13D-204ENST00000469054 C1orf94Q6P1W5 598 aa10.54□□□□□ -0.72
VPS13D-204ENST00000469054 TMEM123Q8N131 208 aa10.54□□□□□ -0.72
VPS13D-204ENST00000469054 LRRC75AQ8NAA5 344 aa10.54□□□□□ -0.72
VPS13D-204ENST00000469054 OR6X1Q8NH79 312 aa10.54□□□□□ -0.72
VPS13D-204ENST00000469054 KISS1RQ969F8 398 aaPredicted RBP10.54□□□□□ -0.72
VPS13D-204ENST00000469054 DUS3LQ96G46 650 aaKnown RBP10.54□□□□□ -0.72
VPS13D-204ENST00000469054 LRR1Q96L50 414 aa10.54□□□□□ -0.72
VPS13D-204ENST00000469054 ADAD1Q96M93 576 aaKnown RBP10.54□□□□□ -0.72
VPS13D-204ENST00000469054 RAB3IPQ96QF0 476 aaPredicted RBP10.54□□□□□ -0.72
VPS13D-204ENST00000469054 OR2M2Q96R28 347 aa10.54□□□□□ -0.72
VPS13D-204ENST00000469054 GPA33Q99795 319 aa10.54□□□□□ -0.72
VPS13D-204ENST00000469054 OR10A4Q9H209 315 aa10.54□□□□□ -0.72
VPS13D-204ENST00000469054 VNN3Q9NY84 501 aa10.54□□□□□ -0.72
VPS13D-204ENST00000469054 TAS2R16Q9NYV7 291 aa10.54□□□□□ -0.72
VPS13D-204ENST00000469054 SIGLEC7Q9Y286 467 aa10.54□□□□□ -0.72
VPS13D-204ENST00000469054 USP9YO00507 2555 aaPredicted RBP10.54□□□□□ -0.72
VPS13D-204ENST00000469054 COL12A1Q99715 3063 aa10.54□□□□□ -0.72
VPS13D-204ENST00000469054 MPDZO75970 2070 aa10.53□□□□□ -0.72
VPS13D-204ENST00000469054 BAHCC1Q9P281 2608 aa10.53□□□□□ -0.72
VPS13D-204ENST00000469054 UNC119BA6NIH7 251 aa10.53□□□□□ -0.72
VPS13D-204ENST00000469054 LYZL6O75951 148 aa10.53□□□□□ -0.72
VPS13D-204ENST00000469054 ITGA5P08648 1049 aa10.53□□□□□ -0.72
VPS13D-204ENST00000469054 EPXP11678 715 aa10.53□□□□□ -0.72
VPS13D-204ENST00000469054 PPP3CBP16298 524 aa10.53□□□□□ -0.72
VPS13D-204ENST00000469054 IL32P24001 234 aa10.53□□□□□ -0.72
VPS13D-204ENST00000469054 FPR3P25089 353 aa10.53□□□□□ -0.72
VPS13D-204ENST00000469054 MPGP29372 298 aa10.53□□□□□ -0.72
VPS13D-204ENST00000469054 GSSP48637 474 aa10.53□□□□□ -0.72
VPS13D-204ENST00000469054 DAP3P51398 398 aaKnown RBP10.53□□□□□ -0.72
VPS13D-204ENST00000469054 FOXG1P55316 489 aaPredicted RBP10.53□□□□□ -0.72
VPS13D-204ENST00000469054 CTXN1P60606 82 aa10.53□□□□□ -0.72
VPS13D-204ENST00000469054 ACTR3P61158 418 aa10.53□□□□□ -0.72
VPS13D-204ENST00000469054 LGALS3BPQ08380 585 aa10.53□□□□□ -0.72
VPS13D-204ENST00000469054 CAMK2DQ13557 499 aa10.53□□□□□ -0.72
VPS13D-204ENST00000469054 TAF11Q15544 211 aa10.53□□□□□ -0.72
VPS13D-204ENST00000469054 TSC22D1Q15714 1073 aa10.53□□□□□ -0.72
VPS13D-204ENST00000469054 ACKR1Q16570 336 aa10.53□□□□□ -0.72
VPS13D-204ENST00000469054 MICAQ29983 383 aa10.53□□□□□ -0.72
VPS13D-204ENST00000469054 CARD17Q5XLA6 110 aa10.53□□□□□ -0.72
VPS13D-204ENST00000469054 ANKRD34AQ69YU3 496 aa10.53□□□□□ -0.72
VPS13D-204ENST00000469054 PGBD2Q6P3X8 592 aa10.53□□□□□ -0.72
VPS13D-204ENST00000469054 BHLHA15Q7RTS1 189 aaPredicted RBP10.53□□□□□ -0.72
VPS13D-204ENST00000469054 ABHD12BQ7Z5M8 362 aaPredicted RBP10.53□□□□□ -0.72
VPS13D-204ENST00000469054 WDFY1Q8IWB7 410 aa10.53□□□□□ -0.72
VPS13D-204ENST00000469054 C20orf196Q8IYI0 205 aa10.53□□□□□ -0.72
VPS13D-204ENST00000469054 ZNF433Q8N7K0 673 aaPredicted RBP10.53□□□□□ -0.72
VPS13D-204ENST00000469054 STEAP2Q8NFT2 490 aa10.53□□□□□ -0.72
VPS13D-204ENST00000469054 OR9Q2Q8NGE9 314 aa10.53□□□□□ -0.72
VPS13D-204ENST00000469054 GNPDA2Q8TDQ7 276 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms