RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 OR6C65A6NJZ3 312 aa16.4■□□□□ 0.22
SHH-204ENST00000441114 OR5H1A6NKK0 313 aa16.4■□□□□ 0.22
SHH-204ENST00000441114 M0R3G1 203 aa16.4■□□□□ 0.22
SHH-204ENST00000441114 SEMG1P04279 462 aa16.4■□□□□ 0.22
SHH-204ENST00000441114 F13BP05160 661 aa16.4■□□□□ 0.22
SHH-204ENST00000441114 FABP3P05413 133 aa16.4■□□□□ 0.22
SHH-204ENST00000441114 ITGA2P17301 1181 aa16.4■□□□□ 0.22
SHH-204ENST00000441114 MAKP20794 623 aa16.4■□□□□ 0.22
SHH-204ENST00000441114 AQP2P41181 271 aa16.4■□□□□ 0.22
SHH-204ENST00000441114 ROR2Q01974 943 aaKnown RBP16.4■□□□□ 0.22
SHH-204ENST00000441114 TGFBR3Q03167 851 aa16.4■□□□□ 0.22
SHH-204ENST00000441114 RPL18Q07020 188 aaKnown RBP16.4■□□□□ 0.22
SHH-204ENST00000441114 TRIM25Q14258 630 aaKnown RBP16.4■□□□□ 0.22
SHH-204ENST00000441114 MELKQ14680 651 aa16.4■□□□□ 0.22
SHH-204ENST00000441114 LAPTM4AQ15012 233 aa16.4■□□□□ 0.22
SHH-204ENST00000441114 BEX5Q5H9J7 111 aa16.4■□□□□ 0.22
SHH-204ENST00000441114 TIMM23BQ5SRD1 257 aa16.4■□□□□ 0.22
SHH-204ENST00000441114 PHYHD1Q5SRE7 291 aa16.4■□□□□ 0.22
SHH-204ENST00000441114 OR7E24Q6IFN5 339 aa16.4■□□□□ 0.22
SHH-204ENST00000441114 PODNL1Q6PEZ8 512 aa16.4■□□□□ 0.22
SHH-204ENST00000441114 SLC35D2Q76EJ3 337 aa16.4■□□□□ 0.22
SHH-204ENST00000441114 WDFY1Q8IWB7 410 aa16.4■□□□□ 0.22
SHH-204ENST00000441114 OR52J3Q8NH60 311 aa16.4■□□□□ 0.22
SHH-204ENST00000441114 MOSPD2Q8NHP6 518 aa16.4■□□□□ 0.22
SHH-204ENST00000441114 USB1Q9BQ65 265 aaKnown RBP16.4■□□□□ 0.22
SHH-204ENST00000441114 C1QTNF6Q9BXI9 259 aa16.4■□□□□ 0.22
SHH-204ENST00000441114 APCP25054 2843 aa16.39■□□□□ 0.21
SHH-204ENST00000441114 A0A1W2PPR1 153 aa16.39■□□□□ 0.21
SHH-204ENST00000441114 IGF2P01344 180 aa16.39■□□□□ 0.21
SHH-204ENST00000441114 SAGP10523 405 aaPredicted RBP16.39■□□□□ 0.21
SHH-204ENST00000441114 SPIBQ01892 262 aa16.39■□□□□ 0.21
SHH-204ENST00000441114 PRKCDQ05655 676 aa16.39■□□□□ 0.21
SHH-204ENST00000441114 DNAL1Q4LDG9 190 aa16.39■□□□□ 0.21
SHH-204ENST00000441114 NHLRC1Q6VVB1 395 aa16.39■□□□□ 0.21
SHH-204ENST00000441114 MBOAT2Q6ZWT7 520 aa16.39■□□□□ 0.21
SHH-204ENST00000441114 CDH24Q86UP0 819 aa16.39■□□□□ 0.21
SHH-204ENST00000441114 ZDHHC21Q8IVQ6 265 aa16.39■□□□□ 0.21
SHH-204ENST00000441114 CDK20Q8IZL9 346 aa16.39■□□□□ 0.21
SHH-204ENST00000441114 RNF113BQ8IZP6 322 aaKnown RBP16.39■□□□□ 0.21
SHH-204ENST00000441114 TMEM123Q8N131 208 aa16.39■□□□□ 0.21
SHH-204ENST00000441114 OR6N1Q8NGY5 312 aa16.39■□□□□ 0.21
SHH-204ENST00000441114 SLC7A6OSQ96CW6 309 aaPredicted RBP16.39■□□□□ 0.21
SHH-204ENST00000441114 MUS81Q96NY9 551 aa16.39■□□□□ 0.21
SHH-204ENST00000441114 PIP5K1AQ99755 562 aa16.39■□□□□ 0.21
SHH-204ENST00000441114 GPR35Q9HC97 309 aa16.39■□□□□ 0.21
SHH-204ENST00000441114 NGBQ9NPG2 151 aa16.39■□□□□ 0.21
SHH-204ENST00000441114 ITGB1BP2Q9UKP3 347 aa16.39■□□□□ 0.21
SHH-204ENST00000441114 A0A1W2PRG6 482 aa16.38■□□□□ 0.21
SHH-204ENST00000441114 EFCAB9A8MZ26 197 aa16.38■□□□□ 0.21
SHH-204ENST00000441114 STAMBPO95630 424 aa16.38■□□□□ 0.21
SHH-204ENST00000441114 LOXP28300 417 aaPredicted RBP16.38■□□□□ 0.21
SHH-204ENST00000441114 HOXC12P31275 282 aa16.38■□□□□ 0.21
SHH-204ENST00000441114 GPR4P46093 362 aa16.38■□□□□ 0.21
SHH-204ENST00000441114 CEACAM16Q2WEN9 425 aa16.38■□□□□ 0.21
SHH-204ENST00000441114 IQCCQ4KMZ1 466 aa16.38■□□□□ 0.21
SHH-204ENST00000441114 HIKESHIQ53FT3 197 aa16.38■□□□□ 0.21
SHH-204ENST00000441114 P2RY8Q86VZ1 359 aa16.38■□□□□ 0.21
SHH-204ENST00000441114 C20orf196Q8IYI0 205 aa16.38■□□□□ 0.21
SHH-204ENST00000441114 OR1K1Q8NGR3 316 aa16.38■□□□□ 0.21
SHH-204ENST00000441114 OR51A7Q8NH64 312 aa16.38■□□□□ 0.21
SHH-204ENST00000441114 SLC7A13Q8TCU3 470 aa16.38■□□□□ 0.21
SHH-204ENST00000441114 LRGUKQ96M69 825 aa16.38■□□□□ 0.21
SHH-204ENST00000441114 BTBD10Q9BSF8 475 aa16.38■□□□□ 0.21
SHH-204ENST00000441114 MUC13Q9H3R2 512 aa16.38■□□□□ 0.21
SHH-204ENST00000441114 ANKRD19PQ9H560 264 aa16.38■□□□□ 0.21
SHH-204ENST00000441114 CRLF2Q9HC73 371 aa16.38■□□□□ 0.21
SHH-204ENST00000441114 INIPQ9NRY2 104 aa16.38■□□□□ 0.21
SHH-204ENST00000441114 ABCA12Q86UK0 2595 aa16.38■□□□□ 0.21
SHH-204ENST00000441114 TRAV27A0A087WT01 109 aa16.37■□□□□ 0.21
SHH-204ENST00000441114 A0A096LPE4 126 aa16.37■□□□□ 0.21
SHH-204ENST00000441114 TRBV4-1A0A0J9YWV2 114 aa16.37■□□□□ 0.21
SHH-204ENST00000441114 A0A1W2PPZ6 126 aa16.37■□□□□ 0.21
SHH-204ENST00000441114 A0A1W2PRQ8 180 aa16.37■□□□□ 0.21
SHH-204ENST00000441114 TCRBV5S2A0A599 114 aa16.37■□□□□ 0.21
SHH-204ENST00000441114 CLOCKO15516 846 aa16.37■□□□□ 0.21
SHH-204ENST00000441114 GADD45GO95257 159 aa16.37■□□□□ 0.21
SHH-204ENST00000441114 BCL10O95999 233 aa16.37■□□□□ 0.21
SHH-204ENST00000441114 PLAUP00749 431 aa16.37■□□□□ 0.21
SHH-204ENST00000441114 ZNF83P51522 516 aa16.37■□□□□ 0.21
SHH-204ENST00000441114 ARF1P84077 181 aaKnown RBP16.37■□□□□ 0.21
SHH-204ENST00000441114 DGCR6Q14129 220 aa16.37■□□□□ 0.21
SHH-204ENST00000441114 MTX3Q5HYI7 312 aa16.37■□□□□ 0.21
SHH-204ENST00000441114 LCN8Q6JVE9 175 aa16.37■□□□□ 0.21
SHH-204ENST00000441114 WDR31Q8NA23 367 aa16.37■□□□□ 0.21
SHH-204ENST00000441114 C1orf162Q8NEQ5 155 aaPredicted RBP16.37■□□□□ 0.21
SHH-204ENST00000441114 OR13C2Q8NGS9 318 aa16.37■□□□□ 0.21
SHH-204ENST00000441114 LIPHQ8WWY8 451 aa16.37■□□□□ 0.21
SHH-204ENST00000441114 ZNF837Q96EG3 531 aaPredicted RBP16.37■□□□□ 0.21
SHH-204ENST00000441114 FAM46AQ96IP4 442 aaKnown RBP16.37■□□□□ 0.21
SHH-204ENST00000441114 PLEKHF2Q9H8W4 249 aa16.37■□□□□ 0.21
SHH-204ENST00000441114 UBTD1Q9HAC8 227 aa16.37■□□□□ 0.21
SHH-204ENST00000441114 B3GAT2Q9NPZ5 323 aa16.37■□□□□ 0.21
SHH-204ENST00000441114 SLC17A5Q9NRA2 495 aa16.37■□□□□ 0.21
SHH-204ENST00000441114 SLC25A15Q9Y619 301 aa16.37■□□□□ 0.21
SHH-204ENST00000441114 HTR3EA5X5Y0 456 aa16.36■□□□□ 0.21
SHH-204ENST00000441114 MCIDASD6RGH6 385 aa16.36■□□□□ 0.21
SHH-204ENST00000441114 SEC14L2O76054 403 aa16.36■□□□□ 0.21
SHH-204ENST00000441114 RRM2P31350 389 aa16.36■□□□□ 0.21
SHH-204ENST00000441114 CSNK1A1P48729 337 aa16.36■□□□□ 0.21
SHH-204ENST00000441114 NR1H2P55055 460 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms