RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 BAIAP2L2Q6UXY1 529 aa13.46□□□□□ -0.25
USP4-203ENST00000415188 TIPARPQ7Z3E1 657 aaKnown RBP13.46□□□□□ -0.25
USP4-203ENST00000415188 CEACAM19Q7Z692 300 aa13.46□□□□□ -0.25
USP4-203ENST00000415188 PLXDC1Q8IUK5 500 aa13.46□□□□□ -0.25
USP4-203ENST00000415188 SDR9C7Q8NEX9 313 aa13.46□□□□□ -0.25
USP4-203ENST00000415188 ELOA3Q8NG57 546 aa13.46□□□□□ -0.25
USP4-203ENST00000415188 OR4C3Q8NH37 302 aa13.46□□□□□ -0.25
USP4-203ENST00000415188 OR4K13Q8NH42 304 aa13.46□□□□□ -0.25
USP4-203ENST00000415188 SMIM19Q96E16 107 aa13.46□□□□□ -0.25
USP4-203ENST00000415188 SNX18Q96RF0 628 aa13.46□□□□□ -0.25
USP4-203ENST00000415188 DDOQ99489 341 aa13.46□□□□□ -0.25
USP4-203ENST00000415188 KCNJ15Q99712 375 aa13.46□□□□□ -0.25
USP4-203ENST00000415188 SPRY4Q9C004 299 aa13.46□□□□□ -0.25
USP4-203ENST00000415188 OR2B2Q9GZK3 357 aa13.46□□□□□ -0.25
USP4-203ENST00000415188 CUTCQ9NTM9 273 aa13.46□□□□□ -0.25
USP4-203ENST00000415188 EXTL2Q9UBQ6 330 aa13.46□□□□□ -0.25
USP4-203ENST00000415188 BSNQ9UPA5 3926 aa13.46□□□□□ -0.25
USP4-203ENST00000415188 BOD1L1Q8NFC6 3051 aa13.45□□□□□ -0.26
USP4-203ENST00000415188 IGHV5-51A0A0C4DH38 117 aa13.45□□□□□ -0.26
USP4-203ENST00000415188 J3QKU1 62 aa13.45□□□□□ -0.26
USP4-203ENST00000415188 SCDO00767 359 aa13.45□□□□□ -0.26
USP4-203ENST00000415188 HPGDP15428 266 aa13.45□□□□□ -0.26
USP4-203ENST00000415188 SHC1P29353 583 aa13.45□□□□□ -0.26
USP4-203ENST00000415188 PYCR1P32322 319 aa13.45□□□□□ -0.26
USP4-203ENST00000415188 THBS2P35442 1172 aa13.45□□□□□ -0.26
USP4-203ENST00000415188 INPP1P49441 399 aa13.45□□□□□ -0.26
USP4-203ENST00000415188 SLC37A1P57057 533 aa13.45□□□□□ -0.26
USP4-203ENST00000415188 SLC3A1Q07837 685 aa13.45□□□□□ -0.26
USP4-203ENST00000415188 MRPL28Q13084 256 aaKnown RBP13.45□□□□□ -0.26
USP4-203ENST00000415188 SKP2Q13309 424 aa13.45□□□□□ -0.26
USP4-203ENST00000415188 ACSM3Q53FZ2 586 aa13.45□□□□□ -0.26
USP4-203ENST00000415188 EMC4Q5J8M3 183 aa13.45□□□□□ -0.26
USP4-203ENST00000415188 ATAD3CQ5T2N8 411 aa13.45□□□□□ -0.26
USP4-203ENST00000415188 ATG4DQ86TL0 474 aaPredicted RBP13.45□□□□□ -0.26
USP4-203ENST00000415188 NPEPL1Q8NDH3 523 aa13.45□□□□□ -0.26
USP4-203ENST00000415188 ZNF486Q96H40 463 aaPredicted RBP13.45□□□□□ -0.26
USP4-203ENST00000415188 LAT2Q9GZY6 243 aa13.45□□□□□ -0.26
USP4-203ENST00000415188 SPRTNQ9H040 489 aaPredicted RBP13.45□□□□□ -0.26
USP4-203ENST00000415188 NEK6Q9HC98 313 aa13.45□□□□□ -0.26
USP4-203ENST00000415188 ABRACLQ9P1F3 81 aa13.45□□□□□ -0.26
USP4-203ENST00000415188 MOKQ9UQ07 419 aa13.45□□□□□ -0.26
USP4-203ENST00000415188 HIF3AQ9Y2N7 669 aa13.45□□□□□ -0.26
USP4-203ENST00000415188 HEATR5AQ86XA9 2040 aa13.44□□□□□ -0.26
USP4-203ENST00000415188 IGKV3D-11A0A0A0MRZ8 115 aa13.44□□□□□ -0.26
USP4-203ENST00000415188 A0A0G2JK05 382 aa13.44□□□□□ -0.26
USP4-203ENST00000415188 LOC101059948A0A1B0GTJ6 334 aa13.44□□□□□ -0.26
USP4-203ENST00000415188 ZNF264O43296 627 aa13.44□□□□□ -0.26
USP4-203ENST00000415188 LYRM1O43325 122 aa13.44□□□□□ -0.26
USP4-203ENST00000415188 GLCEO94923 617 aa13.44□□□□□ -0.26
USP4-203ENST00000415188 UTS2O95399 124 aa13.44□□□□□ -0.26
USP4-203ENST00000415188 TFP02787 698 aa13.44□□□□□ -0.26
USP4-203ENST00000415188 ANKRD34CP0C6C1 535 aa13.44□□□□□ -0.26
USP4-203ENST00000415188 SPI1P17947 270 aa13.44□□□□□ -0.26
USP4-203ENST00000415188 ELK1P19419 428 aa13.44□□□□□ -0.26
USP4-203ENST00000415188 KIR2DL3P43628 341 aa13.44□□□□□ -0.26
USP4-203ENST00000415188 GDI2P50395 445 aaKnown RBP13.44□□□□□ -0.26
USP4-203ENST00000415188 INSL4Q14641 139 aa13.44□□□□□ -0.26
USP4-203ENST00000415188 ELAVL1Q15717 326 aaKnown RBP13.44□□□□□ -0.26
USP4-203ENST00000415188 YOD1Q5VVQ6 348 aaPredicted RBP13.44□□□□□ -0.26
USP4-203ENST00000415188 TMEM151BQ8IW70 566 aa13.44□□□□□ -0.26
USP4-203ENST00000415188 NLGN4YQ8NFZ3 816 aaPredicted RBP13.44□□□□□ -0.26
USP4-203ENST00000415188 OR5J2Q8NH18 312 aa13.44□□□□□ -0.26
USP4-203ENST00000415188 RPS4Y2Q8TD47 263 aa13.44□□□□□ -0.26
USP4-203ENST00000415188 PTPMT1Q8WUK0 201 aaPredicted RBP13.44□□□□□ -0.26
USP4-203ENST00000415188 SLC7A6Q92536 515 aa13.44□□□□□ -0.26
USP4-203ENST00000415188 GHSRQ92847 366 aa13.44□□□□□ -0.26
USP4-203ENST00000415188 ZMYND19Q96E35 227 aaPredicted RBP13.44□□□□□ -0.26
USP4-203ENST00000415188 LCORQ96JN0 433 aaPredicted RBP13.44□□□□□ -0.26
USP4-203ENST00000415188 CMTM3Q96MX0 182 aa13.44□□□□□ -0.26
USP4-203ENST00000415188 ZCCHC4Q9H5U6 513 aa13.44□□□□□ -0.26
USP4-203ENST00000415188 SEMA5BQ9P283 1151 aa13.44□□□□□ -0.26
USP4-203ENST00000415188 FBXL4Q9UKA2 621 aa13.44□□□□□ -0.26
USP4-203ENST00000415188 IGKV1D-42A0A075B6H8 117 aa13.43□□□□□ -0.26
USP4-203ENST00000415188 LINC00854A0A1B0GVQ3 168 aa13.43□□□□□ -0.26
USP4-203ENST00000415188 NOTOA8MTQ0 251 aa13.43□□□□□ -0.26
USP4-203ENST00000415188 OR2B3O76000 313 aa13.43□□□□□ -0.26
USP4-203ENST00000415188 STK17BO94768 372 aa13.43□□□□□ -0.26
USP4-203ENST00000415188 TXNDC12O95881 172 aa13.43□□□□□ -0.26
USP4-203ENST00000415188 GYPBP06028 91 aa13.43□□□□□ -0.26
USP4-203ENST00000415188 CD14P08571 375 aa13.43□□□□□ -0.26
USP4-203ENST00000415188 RAB3BP20337 219 aa13.43□□□□□ -0.26
USP4-203ENST00000415188 NR4A2P43354 598 aa13.43□□□□□ -0.26
USP4-203ENST00000415188 SIRPAP78324 504 aa13.43□□□□□ -0.26
USP4-203ENST00000415188 HSD11B2P80365 405 aa13.43□□□□□ -0.26
USP4-203ENST00000415188 P2RY14Q15391 338 aa13.43□□□□□ -0.26
USP4-203ENST00000415188 NNATQ16517 81 aa13.43□□□□□ -0.26
USP4-203ENST00000415188 ZNF74Q16587 644 aa13.43□□□□□ -0.26
USP4-203ENST00000415188 NDUFA5Q16718 116 aa13.43□□□□□ -0.26
USP4-203ENST00000415188 NDUFAF6Q330K2 333 aa13.43□□□□□ -0.26
USP4-203ENST00000415188 SLC6A19Q695T7 634 aa13.43□□□□□ -0.26
USP4-203ENST00000415188 PYHIN1Q6K0P9 492 aa13.43□□□□□ -0.26
USP4-203ENST00000415188 OVCH1Q7RTY7 1134 aa13.43□□□□□ -0.26
USP4-203ENST00000415188 KCTD20Q7Z5Y7 419 aa13.43□□□□□ -0.26
USP4-203ENST00000415188 NR2C2APQ86WQ0 139 aa13.43□□□□□ -0.26
USP4-203ENST00000415188 C17orf47Q8NEP4 570 aa13.43□□□□□ -0.26
USP4-203ENST00000415188 PHOSPHO1Q8TCT1 267 aa13.43□□□□□ -0.26
USP4-203ENST00000415188 SNX33Q8WV41 574 aa13.43□□□□□ -0.26
USP4-203ENST00000415188 ARSGQ96EG1 525 aa13.43□□□□□ -0.26
USP4-203ENST00000415188 PELI1Q96FA3 418 aa13.43□□□□□ -0.26
USP4-203ENST00000415188 ST6GAL2Q96JF0 529 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms