RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 OR5K1Q8NHB7 308 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 SMAP2Q8WU79 429 aaPredicted RBP3.57□□□□□ -1.84
LIG4-201ENST00000356922 OTULINQ96BN8 352 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 SARAFQ96BY9 339 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 STARD4Q96DR4 205 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 ZHX1-C8orf76Q96EF9 292 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 TSPAN32Q96QS1 320 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 KATNB1Q9BVA0 655 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 SLC19A3Q9BZV2 496 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 OR52D1Q9H346 318 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 ANKRD19PQ9H560 264 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 C12orf49Q9H741 205 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 CALHM2Q9HA72 323 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 KRCC1Q9NPI7 259 aaPredicted RBP3.57□□□□□ -1.84
LIG4-201ENST00000356922 HIF3AQ9Y2N7 669 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 FLVCR1Q9Y5Y0 555 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 SPIN1Q9Y657 262 aaPredicted RBP3.57□□□□□ -1.84
LIG4-201ENST00000356922 PDZD2O15018 2839 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 SLC35F4A4IF30 521 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 SLC22A20A6NK97 555 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 FAM183AA6NL82 134 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 AHRRA9YTQ3 701 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 BHLHE40O14503 412 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 CASQ2O14958 399 aaPredicted RBP3.57□□□□□ -1.84
LIG4-201ENST00000356922 ZG16O60844 167 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 UPK3AO75631 287 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 SYNGR4O95473 234 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 CGAP01215 116 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 STSP08842 583 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 PSKH1P11801 424 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 FPR3P25089 353 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 POU1F1P28069 291 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 AQP4P55087 323 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 SIRPAP78324 504 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 EFNB1P98172 346 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 MYBPC1Q00872 1141 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 POU3F1Q03052 451 aaPredicted RBP3.57□□□□□ -1.84
LIG4-201ENST00000356922 FMODQ06828 376 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 PUDPQ08623 228 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 RASGEF1BQ0VAM2 473 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 PMS2P3Q13401 168 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 RIPK1Q13546 671 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 ZBED5Q49AG3 693 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 ARMC4Q5T2S8 1044 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 WLSQ5T9L3 541 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 NSUN5P2Q63ZY6 315 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 LRFN4Q6PJG9 635 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 ZBTB49Q6ZSB9 765 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 MEIOBQ8N635 442 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 CYB561A3Q8NBI2 242 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 OR9K2Q8NGE7 335 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 SLC25A43Q8WUT9 341 aaPredicted RBP3.57□□□□□ -1.84
LIG4-201ENST00000356922 PTP4A1Q93096 173 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 CCDC120Q96HB5 630 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 HS6ST2Q96MM7 605 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 DDOQ99489 341 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 DGCR6LQ9BY27 220 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 POLR2J2Q9GZM3 115 aaKnown RBP3.57□□□□□ -1.84
LIG4-201ENST00000356922 POLR2J3Q9H1A7 115 aaKnown RBP3.57□□□□□ -1.84
LIG4-201ENST00000356922 FN3KQ9H479 309 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 MED20Q9H944 212 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 FKRPQ9H9S5 495 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 ZNF556Q9HAH1 456 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 CHST11Q9NPF2 352 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 NRIP3Q9NQ35 241 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 TIGARQ9NQ88 270 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 MRPL39Q9NYK5 338 aaKnown RBP3.57□□□□□ -1.84
LIG4-201ENST00000356922 PRSS50Q9UI38 385 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 GPR52Q9Y2T5 361 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 MEMO1Q9Y316 297 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 IER3IP1Q9Y5U9 82 aa3.57□□□□□ -1.84
LIG4-201ENST00000356922 OR6C68A6NDL8 312 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 MBD3L4A6NDZ8 208 aaPredicted RBP3.56□□□□□ -1.84
LIG4-201ENST00000356922 MBD3L3A6NE82 208 aaPredicted RBP3.56□□□□□ -1.84
LIG4-201ENST00000356922 ZNF503-AS2A6NEH8 195 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 UNC119BA6NIH7 251 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 MBD3L5A6NJ08 208 aaPredicted RBP3.56□□□□□ -1.84
LIG4-201ENST00000356922 FAM171A2A8MVW0 826 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 CCL21O00585 134 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 RNF13O43567 381 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 MPZL1O95297 269 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 PPP1R3DO95685 299 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 GYPBP06028 91 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 HIST1H1CP16403 213 aaKnown RBP3.56□□□□□ -1.84
LIG4-201ENST00000356922 CEACAM8P31997 349 aaPredicted RBP3.56□□□□□ -1.84
LIG4-201ENST00000356922 CA7P43166 264 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 GIPRP48546 466 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 CAMK2DQ13557 499 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 RFX4Q33E94 735 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 MESTQ5EB52 335 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 TSPO2Q5TGU0 170 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 C9orf135Q5VTT2 229 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 CARD17Q5XLA6 110 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 ABLIM2Q6H8Q1 611 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 LAIR2Q6ISS4 152 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 ZNF474Q6S9Z5 364 aaPredicted RBP3.56□□□□□ -1.84
LIG4-201ENST00000356922 B3GNT6Q6ZMB0 384 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 BBS1Q8NFJ9 593 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 OR51L1Q8NGJ5 315 aa3.56□□□□□ -1.84
LIG4-201ENST00000356922 MBD3L2Q8NHZ7 208 aaPredicted RBP3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms