RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 CTSFQ9UBX1 484 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 ZNF229Q9UJW7 825 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 SLC7A7Q9UM01 511 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 SNX7Q9UNH6 387 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 ANGPTL3Q9Y5C1 460 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 CFAP46Q8IYW2 2715 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 IGHV5-10-1A0A0J9YXX1 117 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 LOC390937A0A1W2PQ73 354 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 SLC22A1O15245 554 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 CHP2O43745 196 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 NUDT21O43809 227 aaKnown RBP2.06□□□□□ -2.08
VPS54-202ENST00000354504 CTNSO60931 367 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 UPK1BO75841 260 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 CCNB2O95067 398 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 CSF3P09919 207 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 POU2F1P14859 743 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 PORP16435 677 aaPredicted RBP2.06□□□□□ -2.08
VPS54-202ENST00000354504 ALOX12P18054 663 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 GCSHP23434 173 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 CDKN2AP42771 156 aaKnown RBP2.06□□□□□ -2.08
VPS54-202ENST00000354504 ST8SIA6P61647 398 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 HIST1H3AP68431 136 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 SPIBQ01892 262 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 ZNF117Q03924 483 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 RUNX1T1Q06455 604 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 TP53BP2Q13625 1128 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 ERV3-1Q14264 604 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 RBBP5Q15291 538 aaKnown RBP2.06□□□□□ -2.08
VPS54-202ENST00000354504 NEDD8Q15843 81 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 DEFB110Q30KQ9 67 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 PGGHGQ32M88 737 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 TIMM50Q3ZCQ8 353 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 PLK5Q496M5 336 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 DEFB134Q4QY38 66 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 ARMC4Q5T2S8 1044 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 HIST2H3PS2Q5TEC6 136 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 ARMC6Q6NXE6 501 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 ZNF585AQ6P3V2 769 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 ZNF613Q6PF04 617 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 ZNF322Q6U7Q0 402 aaPredicted RBP2.06□□□□□ -2.08
VPS54-202ENST00000354504 FAM198BQ6UWH4 519 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 HIST2H3AQ71DI3 136 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 CDC20BQ86Y33 519 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 RDH10Q8IZV5 341 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 CENPSQ8N2Z9 138 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 OR4F15Q8NGB8 312 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 OR4M1Q8NGD0 313 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 OR52R1Q8NGF1 315 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 ACOT11Q8WXI4 607 aaPredicted RBP2.06□□□□□ -2.08
VPS54-202ENST00000354504 THAP4Q8WY91 577 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 SLC25A38Q96DW6 304 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 TPD52L3Q96J77 140 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 ST6GAL2Q96JF0 529 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 Q96MT0 163 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 COL21A1Q96P44 957 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 TSPAN32Q96QS1 320 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 UTP23Q9BRU9 249 aaKnown RBP2.06□□□□□ -2.08
VPS54-202ENST00000354504 NUDT9Q9BW91 350 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 UCK2Q9BZX2 261 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 FN3KQ9H479 309 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 MTHFD2LQ9H903 347 aaPredicted RBP2.06□□□□□ -2.08
VPS54-202ENST00000354504 MED20Q9H944 212 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 FKRPQ9H9S5 495 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 SLC28A3Q9HAS3 691 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 PFDN4Q9NQP4 134 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 RASSF1Q9NS23 344 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 MED17Q9NVC6 651 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 TBCCD1Q9NVR7 557 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 TMEM160Q9NX00 188 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 BCAP29Q9UHQ4 241 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 ANAPC10Q9UM13 185 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 AUP1Q9Y679 476 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 CHCHD2Q9Y6H1 151 aaPredicted RBP2.06□□□□□ -2.08
VPS54-202ENST00000354504 CSNK1G3Q9Y6M4 447 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 A0A1B0GVC2 190 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 GNG14A0A1W2PPG7 69 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 C5orf63A6NC05 138 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 FRG2CA6NGY1 282 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 SLC9B1P1A6NJY1 282 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 IDSB3KWA1 339 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 GTPBP1O00178 669 aaKnown RBP2.06□□□□□ -2.08
VPS54-202ENST00000354504 CTDSP2O14595 271 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 RGS10O43665 173 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 ERAL1O75616 437 aaKnown RBP2.06□□□□□ -2.08
VPS54-202ENST00000354504 ZBTB11O95625 1053 aaPredicted RBP2.06□□□□□ -2.08
VPS54-202ENST00000354504 KRT75O95678 551 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 FADS2O95864 444 aaKnown RBP2.06□□□□□ -2.08
VPS54-202ENST00000354504 H1F0P07305 194 aaKnown RBP2.06□□□□□ -2.08
VPS54-202ENST00000354504 PPP3CBP16298 524 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 EDN2P20800 178 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 DPP4P27487 766 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 ALDH4A1P30038 563 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 TTKP33981 857 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 RBM34P42696 430 aaKnown RBP2.06□□□□□ -2.08
VPS54-202ENST00000354504 SLC1A3P43003 542 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 KHKP50053 298 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 XKP51811 444 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 KRTAP10-2P60368 255 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 CSNK2BP67870 215 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 SHC2P98077 582 aa2.06□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms