RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 FBXO27Q8NI29 283 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 MR1Q95460 341 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 ARSGQ96EG1 525 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 USB1Q9BQ65 265 aaKnown RBP13.3□□□□□ -0.28
COL7A1-201ENST00000328333 B3GAT1Q9P2W7 334 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 KDM4FA0A1W2PPD8 638 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 LGALS8O00214 317 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 IL2RGP31785 369 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 OR52W1Q6IF63 320 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 PPP1R3BQ86XI6 285 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 IL1F10Q8WWZ1 152 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 ACPTQ9BZG2 426 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 FUT1P19526 365 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 HOXD11P31277 338 aaPredicted RBP13.3□□□□□ -0.28
COL7A1-201ENST00000328333 KDM4DQ6B0I6 523 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 SLC46A3Q7Z3Q1 461 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 FJX1Q86VR8 437 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 NAGSQ8N159 534 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 DTX3Q8N9I9 347 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 DDX31Q9H8H2 851 aaKnown RBP13.3□□□□□ -0.28
COL7A1-201ENST00000328333 OR2A25A4D2G3 310 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 C4orf47A7E2U8 309 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 G3V3Q6 166 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 CFIP05156 583 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 PTNP21246 168 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 AHRP35869 848 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 RABIFP47224 123 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 CSN1S1P47710 185 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 SHEQ5VZ18 495 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 ZNF629Q9UEG4 869 aaPredicted RBP13.3□□□□□ -0.28
COL7A1-201ENST00000328333 SULT2B1O00204 365 aa13.29□□□□□ -0.28
COL7A1-201ENST00000328333 LY86O95711 162 aa13.29□□□□□ -0.28
COL7A1-201ENST00000328333 ACKR3P25106 362 aa13.29□□□□□ -0.28
COL7A1-201ENST00000328333 GSK3AP49840 483 aa13.29□□□□□ -0.28
COL7A1-201ENST00000328333 SLC9A3R2Q15599 337 aa13.29□□□□□ -0.28
COL7A1-201ENST00000328333 TMEM201Q5SNT2 666 aa13.29□□□□□ -0.28
COL7A1-201ENST00000328333 DIO2Q92813 273 aa13.29□□□□□ -0.28
COL7A1-201ENST00000328333 ISG20Q96AZ6 181 aaKnown RBP13.29□□□□□ -0.28
COL7A1-201ENST00000328333 SUSD2Q9UGT4 822 aa13.29□□□□□ -0.28
COL7A1-201ENST00000328333 PIRO00625 290 aa13.29□□□□□ -0.28
COL7A1-201ENST00000328333 FKBP2P26885 142 aaKnown RBP13.29□□□□□ -0.28
COL7A1-201ENST00000328333 NHSL2Q5HYW2 709 aa13.29□□□□□ -0.28
COL7A1-201ENST00000328333 LGI3Q8N145 548 aa13.29□□□□□ -0.28
COL7A1-201ENST00000328333 ATP13A2Q9NQ11 1180 aa13.29□□□□□ -0.28
COL7A1-201ENST00000328333 TIGITQ495A1 244 aa13.29□□□□□ -0.28
COL7A1-201ENST00000328333 SRPK3Q9UPE1 567 aa13.29□□□□□ -0.28
COL7A1-201ENST00000328333 PDGFBP01127 241 aaPredicted RBP13.29□□□□□ -0.28
COL7A1-201ENST00000328333 PFKMP08237 780 aa13.29□□□□□ -0.28
COL7A1-201ENST00000328333 SYN1P17600 705 aa13.29□□□□□ -0.28
COL7A1-201ENST00000328333 SFXN2Q96NB2 322 aa13.29□□□□□ -0.28
COL7A1-201ENST00000328333 SYT17Q9BSW7 474 aa13.29□□□□□ -0.28
COL7A1-201ENST00000328333 HRASLSQ9HDD0 168 aa13.29□□□□□ -0.28
COL7A1-201ENST00000328333 OR5K3A6NET4 321 aa13.29□□□□□ -0.28
COL7A1-201ENST00000328333 CHRM2P08172 466 aa13.29□□□□□ -0.28
COL7A1-201ENST00000328333 COL1A1P02452 1464 aaPredicted RBP13.29□□□□□ -0.28
COL7A1-201ENST00000328333 JUNDP17535 347 aa13.29□□□□□ -0.28
COL7A1-201ENST00000328333 HOXD13P35453 343 aa13.29□□□□□ -0.28
COL7A1-201ENST00000328333 OR5B2Q96R09 309 aa13.29□□□□□ -0.28
COL7A1-201ENST00000328333 SMOQ99835 787 aa13.29□□□□□ -0.28
COL7A1-201ENST00000328333 UBQLN3Q9H347 655 aa13.29□□□□□ -0.28
COL7A1-201ENST00000328333 TRABD2BA6NFA1 517 aa13.29□□□□□ -0.28
COL7A1-201ENST00000328333 FGF7P21781 194 aa13.29□□□□□ -0.28
COL7A1-201ENST00000328333 UBE2G1P62253 170 aa13.29□□□□□ -0.28
COL7A1-201ENST00000328333 IAH1Q2TAA2 248 aaPredicted RBP13.29□□□□□ -0.28
COL7A1-201ENST00000328333 OR2G3Q8NGZ4 309 aa13.29□□□□□ -0.28
COL7A1-201ENST00000328333 INTS12Q96CB8 462 aaKnown RBP13.29□□□□□ -0.28
COL7A1-201ENST00000328333 MOCOSQ96EN8 888 aa13.29□□□□□ -0.28
COL7A1-201ENST00000328333 CIB3Q96Q77 187 aaPredicted RBP13.29□□□□□ -0.28
COL7A1-201ENST00000328333 PLCH1Q4KWH8 1693 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 CTDSP2O14595 271 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 SIX6O95475 246 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 ANTXRLA6NF34 631 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 OMGP23515 440 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 GP2P55259 537 aaKnown RBP13.28□□□□□ -0.28
COL7A1-201ENST00000328333 CDK5Q00535 292 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 RPL3LQ92901 407 aaKnown RBP13.28□□□□□ -0.28
COL7A1-201ENST00000328333 TMEM221A6NGB7 291 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 MEIS3P2A8K0S8 358 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 ACSM4P0C7M7 580 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 SMIM6P0DI80 62 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 BPIFB3P59826 476 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 GRB2P62993 217 aaKnown RBP13.28□□□□□ -0.28
COL7A1-201ENST00000328333 RGMBQ6NW40 437 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 MBOAT2Q6ZWT7 520 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 F2RL3Q96RI0 385 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 ANK1P16157 1881 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 SLC9B1P1A6NJY1 282 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 PIP5KL1Q5T9C9 394 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 TMEM43Q9BTV4 400 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 CORINQ9Y5Q5 1042 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 NPIPB15A6NHN6 443 aaPredicted RBP13.28□□□□□ -0.28
COL7A1-201ENST00000328333 OR8U8P0C7N1 319 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 C5AR1P21730 350 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 ZNRF4Q8WWF5 429 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 HAPLN1P10915 354 aaPredicted RBP13.28□□□□□ -0.28
COL7A1-201ENST00000328333 PODNL1Q6PEZ8 512 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 CMTM8Q8IZV2 173 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 FBXL2Q9UKC9 423 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 URGCP-MRPS24S4R325 110 aa13.28□□□□□ -0.28
COL7A1-201ENST00000328333 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms