RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 FAM230AA0A1W2PPH8 454 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 A0A1W2PS29 197 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 C17orf105B2RV13 164 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 SPI1P17947 270 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 BAMBIQ13145 260 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 SLC25A35Q3KQZ1 300 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 LIPNQ5VXI9 398 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 CARD17Q5XLA6 110 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 CLRN3Q8NCR9 226 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 OR13C5Q8NGS8 318 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 LMX1AQ8TE12 382 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 CNTNAP3Q9BZ76 1288 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 SMIM3Q9BZL3 60 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 PPP4R1LQ9P1A2 415 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 A0A0B4J203 849 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 SERINC4A6NH21 518 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 NTSR1P30989 418 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 STK11Q15831 433 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 Q6ZTK2 550 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 ACOT7LQ6ZUV0 252 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 C12orf76Q8N812 135 aaPredicted RBP17.8■□□□□ 0.44
USP48-201ENST00000308271 ZNF709Q8N972 641 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 FAM71CQ8NEG0 241 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 STACQ99469 402 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 GPR174Q9BXC1 333 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 OR6C65A6NJZ3 312 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 OIP5O43482 229 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 FCMRO60667 390 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 LPLP06858 475 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 CSF2RAP15509 400 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 SLC6A1P30531 599 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 DIO1P49895 249 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 HHEXQ03014 270 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 DUSP8Q13202 625 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 METRNLQ641Q3 311 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 COX15Q7KZN9 410 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 SLC41A2Q96JW4 573 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 CDCP1Q9H5V8 836 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 SAGE1Q9NXZ1 904 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 WIF1Q9Y5W5 379 aa17.8■□□□□ 0.44
USP48-201ENST00000308271 RPS10-NUDT3A0A1W2PQS6 291 aa17.79■□□□□ 0.44
USP48-201ENST00000308271 RAB19A4D1S5 217 aa17.79■□□□□ 0.44
USP48-201ENST00000308271 IL5P05113 134 aa17.79■□□□□ 0.44
USP48-201ENST00000308271 RPS10P46783 165 aaKnown RBP17.79■□□□□ 0.44
USP48-201ENST00000308271 PCBP3P57721 371 aaKnown RBP17.79■□□□□ 0.44
USP48-201ENST00000308271 PDZK1IP1Q13113 114 aa17.79■□□□□ 0.44
USP48-201ENST00000308271 C1orf61Q13536 156 aa17.79■□□□□ 0.44
USP48-201ENST00000308271 CHRDL2Q6WN34 429 aa17.79■□□□□ 0.44
USP48-201ENST00000308271 SLC35D2Q76EJ3 337 aa17.79■□□□□ 0.44
USP48-201ENST00000308271 WDR77Q9BQA1 342 aaPredicted RBP17.79■□□□□ 0.44
USP48-201ENST00000308271 SLC19A3Q9BZV2 496 aa17.79■□□□□ 0.44
USP48-201ENST00000308271 FBRSQ9HAH7 460 aa17.79■□□□□ 0.44
USP48-201ENST00000308271 ACKR4Q9NPB9 350 aa17.79■□□□□ 0.44
USP48-201ENST00000308271 IGLV3-16A0A075B6K0 115 aa17.79■□□□□ 0.44
USP48-201ENST00000308271 MGMTP16455 207 aa17.79■□□□□ 0.44
USP48-201ENST00000308271 RSU1Q15404 277 aa17.79■□□□□ 0.44
USP48-201ENST00000308271 RTL6Q6ICC9 239 aa17.79■□□□□ 0.44
USP48-201ENST00000308271 TMEM184AQ6ZMB5 413 aa17.79■□□□□ 0.44
USP48-201ENST00000308271 ADGRE4PQ86SQ3 457 aa17.79■□□□□ 0.44
USP48-201ENST00000308271 GPR32P1Q8NGA4 272 aa17.79■□□□□ 0.44
USP48-201ENST00000308271 CIB4A0PJX0 185 aa17.79■□□□□ 0.44
USP48-201ENST00000308271 LEUTXA8MZ59 168 aa17.79■□□□□ 0.44
USP48-201ENST00000308271 H0YGG7 62 aa17.79■□□□□ 0.44
USP48-201ENST00000308271 HTR3BO95264 441 aa17.79■□□□□ 0.44
USP48-201ENST00000308271 CSRP3P50461 194 aa17.79■□□□□ 0.44
USP48-201ENST00000308271 SLC26A5P58743 744 aa17.79■□□□□ 0.44
USP48-201ENST00000308271 ARF3P61204 181 aaPredicted RBP17.79■□□□□ 0.44
USP48-201ENST00000308271 ELOCQ15369 112 aa17.79■□□□□ 0.44
USP48-201ENST00000308271 CMTM3Q96MX0 182 aa17.79■□□□□ 0.44
USP48-201ENST00000308271 ZNF442Q9H7R0 627 aa17.79■□□□□ 0.44
USP48-201ENST00000308271 GPR55Q9Y2T6 319 aaPredicted RBP17.79■□□□□ 0.44
USP48-201ENST00000308271 LGALS8O00214 317 aa17.79■□□□□ 0.44
USP48-201ENST00000308271 ZNF28P17035 718 aa17.79■□□□□ 0.44
USP48-201ENST00000308271 NAT1P18440 290 aa17.79■□□□□ 0.44
USP48-201ENST00000308271 GZMMP51124 257 aa17.79■□□□□ 0.44
USP48-201ENST00000308271 TAS2R46P59540 309 aa17.79■□□□□ 0.44
USP48-201ENST00000308271 C10orf111Q8N326 155 aa17.79■□□□□ 0.44
USP48-201ENST00000308271 DDIT4LQ96D03 193 aa17.79■□□□□ 0.44
USP48-201ENST00000308271 DLL4Q9NR61 685 aa17.79■□□□□ 0.44
USP48-201ENST00000308271 COL24A1Q17RW2 1714 aa17.78■□□□□ 0.44
USP48-201ENST00000308271 DEFA6Q01524 100 aa17.78■□□□□ 0.44
USP48-201ENST00000308271 ZNF79Q15937 498 aa17.78■□□□□ 0.44
USP48-201ENST00000308271 GLYATL3Q5SZD4 288 aa17.78■□□□□ 0.44
USP48-201ENST00000308271 YOD1Q5VVQ6 348 aaPredicted RBP17.78■□□□□ 0.44
USP48-201ENST00000308271 FBLIM1Q8WUP2 373 aa17.78■□□□□ 0.44
USP48-201ENST00000308271 MCOLN1Q9GZU1 580 aa17.78■□□□□ 0.44
USP48-201ENST00000308271 NEU3Q9UQ49 428 aa17.78■□□□□ 0.44
USP48-201ENST00000308271 H7C1C5 153 aa17.78■□□□□ 0.44
USP48-201ENST00000308271 PLA2G10O15496 165 aa17.78■□□□□ 0.44
USP48-201ENST00000308271 ZNF264O43296 627 aa17.78■□□□□ 0.44
USP48-201ENST00000308271 NAGAP17050 411 aa17.78■□□□□ 0.44
USP48-201ENST00000308271 P2RY2P41231 377 aa17.78■□□□□ 0.44
USP48-201ENST00000308271 ALDH3B1P43353 468 aa17.78■□□□□ 0.44
USP48-201ENST00000308271 AFF3P51826 1226 aaKnown RBP17.78■□□□□ 0.44
USP48-201ENST00000308271 NR0B1P51843 470 aaKnown RBP17.78■□□□□ 0.44
USP48-201ENST00000308271 LCN6P62502 163 aa17.78■□□□□ 0.44
USP48-201ENST00000308271 FAM209AQ5JX71 171 aa17.78■□□□□ 0.44
USP48-201ENST00000308271 TTLL10Q6ZVT0 673 aa17.78■□□□□ 0.44
USP48-201ENST00000308271 RELL2Q8NC24 303 aaPredicted RBP17.78■□□□□ 0.44
USP48-201ENST00000308271 Q96M85 177 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms