RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 IGHV3-15A0A0B4J1V0 119 aa14.84□□□□□ -0.03
USP4-201ENST00000265560 PINLYPA6NC86 204 aa14.84□□□□□ -0.03
USP4-201ENST00000265560 TRIM64BA6NI03 449 aa14.84□□□□□ -0.03
USP4-201ENST00000265560 MS4A18H0YCH9 400 aa14.84□□□□□ -0.03
USP4-201ENST00000265560 IGHA1P01876 353 aa14.84□□□□□ -0.03
USP4-201ENST00000265560 RBMS1P29558 406 aaKnown RBP14.84□□□□□ -0.03
USP4-201ENST00000265560 NUBP1P53384 320 aa14.84□□□□□ -0.03
USP4-201ENST00000265560 POU3F1Q03052 451 aaPredicted RBP14.84□□□□□ -0.03
USP4-201ENST00000265560 ZNF85Q03923 595 aa14.84□□□□□ -0.03
USP4-201ENST00000265560 SGCBQ16585 318 aa14.84□□□□□ -0.03
USP4-201ENST00000265560 MS4A18Q3C1V0 323 aa14.84□□□□□ -0.03
USP4-201ENST00000265560 ZNF322Q6U7Q0 402 aaPredicted RBP14.84□□□□□ -0.03
USP4-201ENST00000265560 KLHL36Q8N4N3 616 aa14.84□□□□□ -0.03
USP4-201ENST00000265560 PSD4Q8NDX1 1056 aa14.84□□□□□ -0.03
USP4-201ENST00000265560 TBC1D15Q8TC07 691 aa14.84□□□□□ -0.03
USP4-201ENST00000265560 HTRA1Q92743 480 aa14.84□□□□□ -0.03
USP4-201ENST00000265560 C4orf36Q96KX1 117 aa14.84□□□□□ -0.03
USP4-201ENST00000265560 SIGLEC12Q96PQ1 595 aa14.84□□□□□ -0.03
USP4-201ENST00000265560 ARHGAP9Q9BRR9 750 aa14.84□□□□□ -0.03
USP4-201ENST00000265560 GPR87Q9BY21 358 aa14.84□□□□□ -0.03
USP4-201ENST00000265560 DOCK7Q96N67 2140 aa14.84□□□□□ -0.03
USP4-201ENST00000265560 SLC22A1O15245 554 aa14.83□□□□□ -0.03
USP4-201ENST00000265560 IFNGR1P15260 489 aa14.83□□□□□ -0.03
USP4-201ENST00000265560 HTR3AP46098 478 aa14.83□□□□□ -0.03
USP4-201ENST00000265560 C22orf42Q6IC83 251 aa14.83□□□□□ -0.03
USP4-201ENST00000265560 ZNF485Q8NCK3 441 aa14.83□□□□□ -0.03
USP4-201ENST00000265560 TMEM129A0AVI4 362 aa14.83□□□□□ -0.04
USP4-201ENST00000265560 NKX2-8O15522 239 aa14.83□□□□□ -0.04
USP4-201ENST00000265560 LIFP15018 202 aa14.83□□□□□ -0.04
USP4-201ENST00000265560 NBL1P41271 181 aa14.83□□□□□ -0.04
USP4-201ENST00000265560 CRYBB2P43320 205 aa14.83□□□□□ -0.04
USP4-201ENST00000265560 MLLT11Q13015 90 aaPredicted RBP14.83□□□□□ -0.04
USP4-201ENST00000265560 ZNF775Q96BV0 537 aaPredicted RBP14.83□□□□□ -0.04
USP4-201ENST00000265560 DDIT4LQ96D03 193 aa14.83□□□□□ -0.04
USP4-201ENST00000265560 GPX7Q96SL4 187 aaPredicted RBP14.83□□□□□ -0.04
USP4-201ENST00000265560 ANGPTL4Q9BY76 406 aa14.83□□□□□ -0.04
USP4-201ENST00000265560 WDR76Q9H967 626 aa14.83□□□□□ -0.04
USP4-201ENST00000265560 KLHL21Q9UJP4 597 aa14.83□□□□□ -0.04
USP4-201ENST00000265560 ARGFXA6NJG6 315 aa14.83□□□□□ -0.04
USP4-201ENST00000265560 C21orf140B9A014 251 aa14.83□□□□□ -0.04
USP4-201ENST00000265560 H3BSH0 61 aa14.83□□□□□ -0.04
USP4-201ENST00000265560 TRAPPC6AO75865 159 aa14.83□□□□□ -0.04
USP4-201ENST00000265560 HLA-DQA2P01906 255 aa14.83□□□□□ -0.04
USP4-201ENST00000265560 P04436 131 aa14.83□□□□□ -0.04
USP4-201ENST00000265560 CD63P08962 238 aa14.83□□□□□ -0.04
USP4-201ENST00000265560 CD96P40200 585 aa14.83□□□□□ -0.04
USP4-201ENST00000265560 CYB561P49447 251 aa14.83□□□□□ -0.04
USP4-201ENST00000265560 FMODQ06828 376 aa14.83□□□□□ -0.04
USP4-201ENST00000265560 TMEM44Q2T9K0 475 aa14.83□□□□□ -0.04
USP4-201ENST00000265560 UBQLNLQ8IYU4 475 aa14.83□□□□□ -0.04
USP4-201ENST00000265560 FADS6Q8N9I5 356 aa14.83□□□□□ -0.04
USP4-201ENST00000265560 DYNC2LI1Q8TCX1 351 aa14.83□□□□□ -0.04
USP4-201ENST00000265560 MRGPRX4Q96LA9 322 aa14.83□□□□□ -0.04
USP4-201ENST00000265560 LRFN1Q9P244 771 aa14.83□□□□□ -0.04
USP4-201ENST00000265560 A0A087WV48 116 aa14.82□□□□□ -0.04
USP4-201ENST00000265560 J3QRK9 145 aa14.82□□□□□ -0.04
USP4-201ENST00000265560 XKRYO14609 159 aa14.82□□□□□ -0.04
USP4-201ENST00000265560 ZIC3O60481 467 aa14.82□□□□□ -0.04
USP4-201ENST00000265560 LRP3O75074 770 aa14.82□□□□□ -0.04
USP4-201ENST00000265560 PSMA1P25786 263 aaKnown RBP14.82□□□□□ -0.04
USP4-201ENST00000265560 MSX1P28360 303 aa14.82□□□□□ -0.04
USP4-201ENST00000265560 PSMB10P40306 273 aa14.82□□□□□ -0.04
USP4-201ENST00000265560 OR2B6P58173 313 aa14.82□□□□□ -0.04
USP4-201ENST00000265560 PUDPQ08623 228 aa14.82□□□□□ -0.04
USP4-201ENST00000265560 MEP1BQ16820 701 aa14.82□□□□□ -0.04
USP4-201ENST00000265560 CRTC2Q53ET0 693 aaPredicted RBP14.82□□□□□ -0.04
USP4-201ENST00000265560 LINC01590Q5TEZ4 76 aa14.82□□□□□ -0.04
USP4-201ENST00000265560 TIGD3Q6B0B8 471 aa14.82□□□□□ -0.04
USP4-201ENST00000265560 ADCK1Q86TW2 530 aa14.82□□□□□ -0.04
USP4-201ENST00000265560 STK35Q8TDR2 534 aa14.82□□□□□ -0.04
USP4-201ENST00000265560 DKKL1Q9UK85 242 aa14.82□□□□□ -0.04
USP4-201ENST00000265560 ZMIZ1Q9ULJ6 1067 aa14.82□□□□□ -0.04
USP4-201ENST00000265560 PRR32B1ATL7 298 aa14.82□□□□□ -0.04
USP4-201ENST00000265560 OR2T1O43869 369 aa14.82□□□□□ -0.04
USP4-201ENST00000265560 DXOO77932 396 aaKnown RBP14.82□□□□□ -0.04
USP4-201ENST00000265560 MPZL1O95297 269 aa14.82□□□□□ -0.04
USP4-201ENST00000265560 MT-ATP6P00846 226 aa14.82□□□□□ -0.04
USP4-201ENST00000265560 WT1P19544 449 aaPredicted RBP14.82□□□□□ -0.04
USP4-201ENST00000265560 IDUAP35475 653 aa14.82□□□□□ -0.04
USP4-201ENST00000265560 SUMO3P55854 103 aaPredicted RBP14.82□□□□□ -0.04
USP4-201ENST00000265560 SPATC1Q76KD6 591 aa14.82□□□□□ -0.04
USP4-201ENST00000265560 ARIH2OSQ8N7S6 290 aa14.82□□□□□ -0.04
USP4-201ENST00000265560 ADAMTS17Q8TE56 1095 aa14.82□□□□□ -0.04
USP4-201ENST00000265560 NMNAT2Q9BZQ4 307 aa14.82□□□□□ -0.04
USP4-201ENST00000265560 KLHL13Q9P2N7 655 aa14.82□□□□□ -0.04
USP4-201ENST00000265560 KLHDC2Q9Y2U9 406 aa14.82□□□□□ -0.04
USP4-201ENST00000265560 IRGMA1A4Y4 181 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 CD8B2A6NJW9 211 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 LIPT2A6NK58 231 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 SLC16A7O60669 478 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 CLEC2LP0C7M8 214 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 CD8BP10966 210 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 STARP49675 285 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 DIO1P49895 249 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 CAV3P56539 151 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 SLC3A1Q07837 685 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 ARL9Q6T311 187 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 ALDH16A1Q8IZ83 802 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 CNN2Q99439 309 aaKnown RBP14.81□□□□□ -0.04
USP4-201ENST00000265560 CPNE5Q9HCH3 593 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms