RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 RGSL1A5PLK6 1076 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 ZNF726A6NNF4 738 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 C12orf71A8MTZ7 269 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 E7ESA3 106 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 NPIPA7E9PJI5 369 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 F5H6K3 240 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 LOC110117498-PIK3R3F6TDL0 507 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 SPECC1L-ADORA2AF8WAN1 911 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 PRRG1O14668 218 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 HSD17B6O14756 317 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 RASGRF2O14827 1237 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 SLC31A2O15432 143 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 SOCS1O15524 211 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 RBFOX2O43251 390 aaKnown RBP eCLIP0.14□□□□□ -2.39
VPS35-212ENST00000640313 PRPSAP2O60256 369 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 PFKFB2O60825 505 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 RAMP3O60896 148 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 ENTPD5O75356 428 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 BCAS1O75363 584 aaPredicted RBP0.14□□□□□ -2.39
VPS35-212ENST00000640313 SPAG7O75391 227 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 SEC22BO75396 215 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 UPK3AO75631 287 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 RCBTB2O95199 551 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 C1orf105O95561 183 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 AP2A1O95782 977 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 C6orf47O95873 294 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 IGKV1D-16P01601 117 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 P04436 131 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 ADRA2AP08913 450 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 GIPP09681 153 aaPredicted RBP0.14□□□□□ -2.39
VPS35-212ENST00000640313 IQCF3P0C7M6 154 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 ZDHHC11BP0C7U3 371 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 POLR2MP0CAP2 368 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 GKN3PP0CG01 181 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 DUX4L2P0CJ85 424 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 DUX4L3P0CJ86 424 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 DUX4L5P0CJ88 424 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 DUX4L6P0CJ89 424 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 DUX4L7P0CJ90 424 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 PNMA6AP0CW24 399 aaPredicted RBP0.14□□□□□ -2.39
VPS35-212ENST00000640313 NPIPA8P0DM63 369 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 SMIM10L1P0DMW3 83 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 CCDC192P0DO97 292 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 CCDC130P13994 396 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 POU2F1P14859 743 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 FOLR1P15328 257 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 PGAM1P18669 254 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 CNR1P21554 472 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 DRD5P21918 477 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 PCMT1P22061 227 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 CMA1P23946 247 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 CYP2F1P24903 491 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 HTR2AP28223 471 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 LAP3P28838 519 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 CCND2P30279 289 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 CALCRP30988 508 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 FMO3P31513 532 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 RFC4P35249 363 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 SOX6P35712 828 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 GLP1RP43220 463 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 NPBWR2P48146 333 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 RFX3P48380 749 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 ARRB1P49407 418 aaPredicted RBP0.14□□□□□ -2.39
VPS35-212ENST00000640313 UBE2AP49459 152 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 DUSP3P51452 185 aaPredicted RBP0.14□□□□□ -2.39
VPS35-212ENST00000640313 ZNF138P52744 262 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 NAPAP54920 295 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 ESRRGP62508 458 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 SLC7A9P82251 487 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 HMGCS1Q01581 520 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 KLRC3Q07444 240 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 NCBP1Q09161 790 aaKnown RBP0.14□□□□□ -2.39
VPS35-212ENST00000640313 PDZK1IP1Q13113 114 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 SLC39A6Q13433 755 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 PON3Q15166 354 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 UBE2SQ16763 222 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 DUSP7Q16829 419 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 MICBQ29980 383 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 TRIM16LQ309B1 348 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 TTLL9Q3SXZ7 439 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 COX19Q49B96 90 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 BOLA3Q53S33 107 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 ZNF684Q5T5D7 378 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 NCR3LG1Q68D85 454 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 SPECC1LQ69YQ0 1117 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 TIGD3Q6B0B8 471 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 RAET1GQ6H3X3 334 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 LCN12Q6JVE5 192 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 GUSBP11Q6P575 273 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 CEMP1Q6PRD7 247 aaPredicted RBP0.14□□□□□ -2.39
VPS35-212ENST00000640313 AFTPHQ6ULP2 937 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 TMEM205Q6UW68 189 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 ISLR2Q6UXK2 745 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 KDM7AQ6ZMT4 941 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 LINC00173Q6ZV60 143 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 NCCRP1Q6ZVX7 275 aaPredicted RBP0.14□□□□□ -2.39
VPS35-212ENST00000640313 PGAP1Q75T13 922 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 NEGR1Q7Z3B1 354 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 BIVMQ86UB2 503 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 TRIM69Q86WT6 500 aa0.14□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms