RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 IL20RAQ9UHF4 553 aa11.9□□□□□ -0.5
LINC00540-202ENST00000616974 TLN2Q9Y4G6 2542 aa11.9□□□□□ -0.5
LINC00540-202ENST00000616974 TUBAL3A6NHL2 446 aa11.89□□□□□ -0.51
LINC00540-202ENST00000616974 BLOC1S5-TXNDC5H3BN57 136 aa11.89□□□□□ -0.51
LINC00540-202ENST00000616974 MRPL33O75394 65 aaKnown RBP11.89□□□□□ -0.51
LINC00540-202ENST00000616974 ADORA3P0DMS8 318 aa11.89□□□□□ -0.51
LINC00540-202ENST00000616974 UMPSP11172 480 aa11.89□□□□□ -0.51
LINC00540-202ENST00000616974 IFI30P13284 250 aa11.89□□□□□ -0.51
LINC00540-202ENST00000616974 DNAJA1P31689 397 aaKnown RBP11.89□□□□□ -0.51
LINC00540-202ENST00000616974 AQP2P41181 271 aa11.89□□□□□ -0.51
LINC00540-202ENST00000616974 KIR2DL3P43628 341 aa11.89□□□□□ -0.51
LINC00540-202ENST00000616974 IST1P53990 364 aa11.89□□□□□ -0.51
LINC00540-202ENST00000616974 PMS2P3Q13401 168 aa11.89□□□□□ -0.51
LINC00540-202ENST00000616974 FGD3Q5JSP0 725 aa11.89□□□□□ -0.51
LINC00540-202ENST00000616974 GTF2IRD2BQ6EKJ0 949 aa11.89□□□□□ -0.51
LINC00540-202ENST00000616974 NIPAL3Q6P499 406 aa11.89□□□□□ -0.51
LINC00540-202ENST00000616974 GTF2IRD2Q86UP8 949 aa11.89□□□□□ -0.51
LINC00540-202ENST00000616974 ZNF100Q8IYN0 542 aa11.89□□□□□ -0.51
LINC00540-202ENST00000616974 UBE2J2Q8N2K1 259 aa11.89□□□□□ -0.51
LINC00540-202ENST00000616974 CLDN22Q8N7P3 220 aa11.89□□□□□ -0.51
LINC00540-202ENST00000616974 PIK3C3Q8NEB9 887 aa11.89□□□□□ -0.51
LINC00540-202ENST00000616974 ASB9Q96DX5 294 aa11.89□□□□□ -0.51
LINC00540-202ENST00000616974 SPOCK3Q9BQ16 436 aa11.89□□□□□ -0.51
LINC00540-202ENST00000616974 NAA11Q9BSU3 229 aaPredicted RBP11.89□□□□□ -0.51
LINC00540-202ENST00000616974 NANSQ9NR45 359 aa11.89□□□□□ -0.51
LINC00540-202ENST00000616974 PRPF19Q9UMS4 504 aaKnown RBP11.89□□□□□ -0.51
LINC00540-202ENST00000616974 POMPQ9Y244 141 aa11.89□□□□□ -0.51
LINC00540-202ENST00000616974 OR2T1O43869 369 aa11.89□□□□□ -0.51
LINC00540-202ENST00000616974 RAD51DO75771 328 aa11.89□□□□□ -0.51
LINC00540-202ENST00000616974 GTF2E2P29084 291 aaKnown RBP11.89□□□□□ -0.51
LINC00540-202ENST00000616974 PUDPQ08623 228 aa11.89□□□□□ -0.51
LINC00540-202ENST00000616974 ST3GAL3Q11203 375 aa11.89□□□□□ -0.51
LINC00540-202ENST00000616974 SEZ6L2Q6UXD5 910 aa11.89□□□□□ -0.51
LINC00540-202ENST00000616974 ZDHHC21Q8IVQ6 265 aa11.89□□□□□ -0.51
LINC00540-202ENST00000616974 OR13C2Q8NGS9 318 aa11.89□□□□□ -0.51
LINC00540-202ENST00000616974 OR5J2Q8NH18 312 aa11.89□□□□□ -0.51
LINC00540-202ENST00000616974 APH1AQ96BI3 265 aa11.89□□□□□ -0.51
LINC00540-202ENST00000616974 FAM46AQ96IP4 442 aaKnown RBP11.89□□□□□ -0.51
LINC00540-202ENST00000616974 HS3ST6Q96QI5 342 aa11.89□□□□□ -0.51
LINC00540-202ENST00000616974 MRPL39Q9NYK5 338 aaKnown RBP11.89□□□□□ -0.51
LINC00540-202ENST00000616974 SH3D21A4FU49 640 aa11.88□□□□□ -0.51
LINC00540-202ENST00000616974 PDLIM1O00151 329 aa11.88□□□□□ -0.51
LINC00540-202ENST00000616974 DNAJC8O75937 253 aaPredicted RBP11.88□□□□□ -0.51
LINC00540-202ENST00000616974 IFNGR1P15260 489 aa11.88□□□□□ -0.51
LINC00540-202ENST00000616974 RRM2P31350 389 aa11.88□□□□□ -0.51
LINC00540-202ENST00000616974 FXYD6P3P58550 94 aa11.88□□□□□ -0.51
LINC00540-202ENST00000616974 RPL18Q07020 188 aaKnown RBP11.88□□□□□ -0.51
LINC00540-202ENST00000616974 CAMK2DQ13557 499 aa11.88□□□□□ -0.51
LINC00540-202ENST00000616974 PDK3Q15120 406 aa11.88□□□□□ -0.51
LINC00540-202ENST00000616974 Q6ZT83 130 aa11.88□□□□□ -0.51
LINC00540-202ENST00000616974 AAED1Q7RTV5 226 aa11.88□□□□□ -0.51
LINC00540-202ENST00000616974 ADGRG5Q8IZF4 528 aa11.88□□□□□ -0.51
LINC00540-202ENST00000616974 OR51A7Q8NH64 312 aa11.88□□□□□ -0.51
LINC00540-202ENST00000616974 CANT1Q8WVQ1 401 aa11.88□□□□□ -0.51
LINC00540-202ENST00000616974 BPIFA2Q96DR5 249 aa11.88□□□□□ -0.51
LINC00540-202ENST00000616974 EPYCQ99645 322 aa11.88□□□□□ -0.51
LINC00540-202ENST00000616974 ACTR6Q9GZN1 396 aa11.88□□□□□ -0.51
LINC00540-202ENST00000616974 IL1RAPQ9NPH3 570 aa11.88□□□□□ -0.51
LINC00540-202ENST00000616974 B3GALT5Q9Y2C3 310 aa11.88□□□□□ -0.51
LINC00540-202ENST00000616974 C16orf97H3BN30 126 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 IMPA2O14732 288 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 HNRNPRO43390 633 aaKnown RBP11.87□□□□□ -0.51
LINC00540-202ENST00000616974 GMNNO75496 209 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 ZNF43P17038 809 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 SPIBQ01892 262 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 TLE4Q04727 773 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 TRAM2Q15035 370 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 SFRP5Q5T4F7 317 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 FBXW9Q5XUX1 488 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 SLCO4A1Q96BD0 722 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 DHRS1Q96LJ7 313 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 OXGR1Q96P68 337 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 OR2M2Q96R28 347 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 PIP5K1AQ99755 562 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 EVA1AQ9H8M9 152 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 GP6Q9HCN6 339 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 EMC3Q9P0I2 261 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 MALT1Q9UDY8 824 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 MED31Q9Y3C7 131 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 U3KQV3 271 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 SLC35F4A4IF30 521 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 ZNF503-AS2A6NEH8 195 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 OR7A10O76100 309 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 FABP3P05413 133 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 H1F0P07305 194 aaKnown RBP11.87□□□□□ -0.51
LINC00540-202ENST00000616974 RHCEP18577 417 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 TUBA1BP68363 451 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 TUBA4AP68366 448 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 TAB1Q15750 504 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 STK11Q15831 433 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 ZNF730Q6ZMV8 503 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 BEND4Q6ZU67 534 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 TUBA1AQ71U36 451 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 TMEM179BQ7Z7N9 219 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 TMEM123Q8N131 208 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 ZNF433Q8N7K0 673 aaPredicted RBP11.87□□□□□ -0.51
LINC00540-202ENST00000616974 OR9Q2Q8NGE9 314 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 SGTBQ96EQ0 304 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 TNFRSF13CQ96RJ3 184 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 MED18Q9BUE0 208 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms