RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 KATNB1Q9BVA0 655 aa18.92■□□□□ 0.62
UPF1-207ENST00000599848 DDX31Q9H8H2 851 aaKnown RBP18.92■□□□□ 0.62
UPF1-207ENST00000599848 AK6Q9Y3D8 172 aaKnown RBP18.92■□□□□ 0.62
UPF1-207ENST00000599848 SEMA3BQ13214 749 aa18.92■□□□□ 0.62
UPF1-207ENST00000599848 SLC35G3Q8N808 338 aa18.92■□□□□ 0.62
UPF1-207ENST00000599848 SLC35A4Q96G79 324 aa18.92■□□□□ 0.62
UPF1-207ENST00000599848 SLC22A12Q96S37 553 aa18.92■□□□□ 0.62
UPF1-207ENST00000599848 DUSP22Q9NRW4 184 aa18.92■□□□□ 0.62
UPF1-207ENST00000599848 PPA2Q9H2U2 334 aa18.92■□□□□ 0.62
UPF1-207ENST00000599848 MOB1AQ9H8S9 216 aa18.92■□□□□ 0.62
UPF1-207ENST00000599848 G3V3Y1 287 aa18.91■□□□□ 0.62
UPF1-207ENST00000599848 GLAP06280 429 aa18.91■□□□□ 0.62
UPF1-207ENST00000599848 CD14P08571 375 aa18.91■□□□□ 0.62
UPF1-207ENST00000599848 CSNK1G2P78368 415 aa18.91■□□□□ 0.62
UPF1-207ENST00000599848 TBRG1Q3YBR2 411 aa18.91■□□□□ 0.62
UPF1-207ENST00000599848 C4orf36Q96KX1 117 aa18.91■□□□□ 0.62
UPF1-207ENST00000599848 HYLS1Q96M11 299 aa18.91■□□□□ 0.62
UPF1-207ENST00000599848 CSF3RQ99062 836 aa18.91■□□□□ 0.62
UPF1-207ENST00000599848 SHPRHQ149N8 1683 aa18.91■□□□□ 0.62
UPF1-207ENST00000599848 NME4O00746 187 aa18.91■□□□□ 0.62
UPF1-207ENST00000599848 MPLP40238 635 aa18.91■□□□□ 0.62
UPF1-207ENST00000599848 SRP9P49458 86 aaKnown RBP18.91■□□□□ 0.62
UPF1-207ENST00000599848 PAN3Q58A45 887 aaKnown RBP18.91■□□□□ 0.62
UPF1-207ENST00000599848 SFRP5Q5T4F7 317 aa18.91■□□□□ 0.62
UPF1-207ENST00000599848 SFRP4Q6FHJ7 346 aaPredicted RBP18.91■□□□□ 0.62
UPF1-207ENST00000599848 KCTD12Q96CX2 325 aaKnown RBP18.91■□□□□ 0.62
UPF1-207ENST00000599848 SGPP1Q9BX95 441 aa18.91■□□□□ 0.62
UPF1-207ENST00000599848 SGCEO43556 437 aa18.91■□□□□ 0.62
UPF1-207ENST00000599848 ID4P47928 161 aa18.91■□□□□ 0.62
UPF1-207ENST00000599848 MAP2K6P52564 334 aa18.91■□□□□ 0.62
UPF1-207ENST00000599848 RAB5BP61020 215 aa18.91■□□□□ 0.62
UPF1-207ENST00000599848 PDXPQ96GD0 296 aa18.91■□□□□ 0.62
UPF1-207ENST00000599848 ALG12Q9BV10 488 aa18.91■□□□□ 0.62
UPF1-207ENST00000599848 IGLV3-10A0A075B6K4 115 aa18.91■□□□□ 0.62
UPF1-207ENST00000599848 CXADRP78310 365 aa18.91■□□□□ 0.62
UPF1-207ENST00000599848 ZXDBP98169 803 aa18.91■□□□□ 0.62
UPF1-207ENST00000599848 ZNF718Q3SXZ3 478 aa18.91■□□□□ 0.62
UPF1-207ENST00000599848 TMEM207Q6UWW9 146 aa18.91■□□□□ 0.62
UPF1-207ENST00000599848 NLRP8Q86W28 1048 aa18.91■□□□□ 0.62
UPF1-207ENST00000599848 MSTNO14793 375 aa18.9■□□□□ 0.62
UPF1-207ENST00000599848 SPOCK1Q08629 439 aa18.9■□□□□ 0.62
UPF1-207ENST00000599848 GTDC1Q4AE62 458 aa18.9■□□□□ 0.62
UPF1-207ENST00000599848 AARDQ4LEZ3 155 aa18.9■□□□□ 0.62
UPF1-207ENST00000599848 FAM198BQ6UWH4 519 aa18.9■□□□□ 0.62
UPF1-207ENST00000599848 SIMC1Q8NDZ2 872 aa18.9■□□□□ 0.62
UPF1-207ENST00000599848 FOXQ1Q9C009 403 aa18.9■□□□□ 0.62
UPF1-207ENST00000599848 GOSR2O14653 212 aa18.9■□□□□ 0.62
UPF1-207ENST00000599848 F13BP05160 661 aa18.9■□□□□ 0.62
UPF1-207ENST00000599848 FBXW12Q6X9E4 464 aa18.9■□□□□ 0.62
UPF1-207ENST00000599848 CMTM2Q8TAZ6 248 aa18.9■□□□□ 0.62
UPF1-207ENST00000599848 DEFB127Q9H1M4 99 aa18.9■□□□□ 0.62
UPF1-207ENST00000599848 C2CD4DB7Z1M9 353 aa18.9■□□□□ 0.62
UPF1-207ENST00000599848 MT-CO3P00414 261 aa18.9■□□□□ 0.62
UPF1-207ENST00000599848 ITGAMP11215 1152 aa18.9■□□□□ 0.62
UPF1-207ENST00000599848 ALDH3B1P43353 468 aa18.9■□□□□ 0.62
UPF1-207ENST00000599848 SYPL1Q16563 259 aa18.9■□□□□ 0.62
UPF1-207ENST00000599848 DTWD1Q8N5C7 304 aa18.9■□□□□ 0.62
UPF1-207ENST00000599848 FGF22Q9HCT0 170 aa18.9■□□□□ 0.62
UPF1-207ENST00000599848 MRPS28Q9Y2Q9 187 aaKnown RBP18.9■□□□□ 0.62
UPF1-207ENST00000599848 ATG4BQ9Y4P1 393 aa18.9■□□□□ 0.62
UPF1-207ENST00000599848 A0A1W2PS29 197 aa18.9■□□□□ 0.62
UPF1-207ENST00000599848 LCN6P62502 163 aa18.9■□□□□ 0.62
UPF1-207ENST00000599848 ZNF789Q5FWF6 425 aa18.9■□□□□ 0.62
UPF1-207ENST00000599848 GPR155Q7Z3F1 870 aa18.9■□□□□ 0.62
UPF1-207ENST00000599848 OR4M1Q8NGD0 313 aa18.9■□□□□ 0.62
UPF1-207ENST00000599848 ABHD6Q9BV23 337 aa18.9■□□□□ 0.62
UPF1-207ENST00000599848 A4GALTQ9NPC4 353 aa18.9■□□□□ 0.62
UPF1-207ENST00000599848 RBMX2Q9Y388 322 aaKnown RBP18.9■□□□□ 0.62
UPF1-207ENST00000599848 CHD2O14647 1828 aaKnown RBP18.89■□□□□ 0.62
UPF1-207ENST00000599848 SNRPD2P62316 118 aaKnown RBP18.89■□□□□ 0.62
UPF1-207ENST00000599848 CLN3Q13286 438 aa18.89■□□□□ 0.62
UPF1-207ENST00000599848 SIRT6Q8N6T7 355 aa18.89■□□□□ 0.62
UPF1-207ENST00000599848 OR7G2Q8NG99 324 aa18.89■□□□□ 0.62
UPF1-207ENST00000599848 SLCO5A1Q9H2Y9 848 aa18.89■□□□□ 0.62
UPF1-207ENST00000599848 SLC22A11Q9NSA0 550 aa18.89■□□□□ 0.62
UPF1-207ENST00000599848 PPT2Q9UMR5 302 aa18.89■□□□□ 0.62
UPF1-207ENST00000599848 ZNF705EA8MWA4 302 aaPredicted RBP18.89■□□□□ 0.61
UPF1-207ENST00000599848 PLRG1O43660 514 aaKnown RBP18.89■□□□□ 0.61
UPF1-207ENST00000599848 LAIR1Q6GTX8 287 aa18.89■□□□□ 0.61
UPF1-207ENST00000599848 FAM111BQ6SJ93 734 aa18.89■□□□□ 0.61
UPF1-207ENST00000599848 SPARTQ8N0X7 666 aa18.89■□□□□ 0.61
UPF1-207ENST00000599848 HCSTQ9UBK5 93 aa18.89■□□□□ 0.61
UPF1-207ENST00000599848 KCNG2Q9UJ96 466 aa18.89■□□□□ 0.61
UPF1-207ENST00000599848 CD22P20273 847 aa18.89■□□□□ 0.61
UPF1-207ENST00000599848 IL13RA1P78552 427 aa18.89■□□□□ 0.61
UPF1-207ENST00000599848 TPBGQ13641 420 aa18.89■□□□□ 0.61
UPF1-207ENST00000599848 MOGSQ13724 837 aa18.89■□□□□ 0.61
UPF1-207ENST00000599848 P2RY14Q15391 338 aa18.89■□□□□ 0.61
UPF1-207ENST00000599848 HENMT1Q5T8I9 393 aaKnown RBP18.89■□□□□ 0.61
UPF1-207ENST00000599848 SERPINA12Q8IW75 414 aa18.89■□□□□ 0.61
UPF1-207ENST00000599848 ETFBKMTQ8IXQ9 262 aa18.89■□□□□ 0.61
UPF1-207ENST00000599848 TMEM185AQ8NFB2 350 aa18.89■□□□□ 0.61
UPF1-207ENST00000599848 RAB3CQ96E17 227 aa18.89■□□□□ 0.61
UPF1-207ENST00000599848 CHRNA9Q9UGM1 479 aa18.89■□□□□ 0.61
UPF1-207ENST00000599848 IL7P13232 177 aa18.89■□□□□ 0.61
UPF1-207ENST00000599848 ITGB8P26012 769 aa18.89■□□□□ 0.61
UPF1-207ENST00000599848 IVDP26440 423 aa18.89■□□□□ 0.61
UPF1-207ENST00000599848 NR4A2P43354 598 aa18.89■□□□□ 0.61
UPF1-207ENST00000599848 TMEM64Q6YI46 380 aa18.89■□□□□ 0.61
UPF1-207ENST00000599848 FAM217AQ8IXS0 508 aa18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms