RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 OPN3Q9H1Y3 402 aaPredicted RBP9.36□□□□□ -0.91
LIG1-210ENST00000596332 NANSQ9NR45 359 aa9.36□□□□□ -0.91
LIG1-210ENST00000596332 KLHL9Q9P2J3 617 aa9.36□□□□□ -0.91
LIG1-210ENST00000596332 DNAJB9Q9UBS3 223 aa9.36□□□□□ -0.91
LIG1-210ENST00000596332 REV1Q9UBZ9 1251 aa9.36□□□□□ -0.91
LIG1-210ENST00000596332 PRSS50Q9UI38 385 aa9.36□□□□□ -0.91
LIG1-210ENST00000596332 RASD1Q9Y272 281 aa9.36□□□□□ -0.91
LIG1-210ENST00000596332 AP4S1Q9Y587 144 aa9.36□□□□□ -0.91
LIG1-210ENST00000596332 CORINQ9Y5Q5 1042 aa9.36□□□□□ -0.91
LIG1-210ENST00000596332 U3KQV3 271 aa9.36□□□□□ -0.91
LIG1-210ENST00000596332 ALPK2Q86TB3 2170 aa9.36□□□□□ -0.91
LIG1-210ENST00000596332 INTS1Q8N201 2190 aaKnown RBP9.36□□□□□ -0.91
LIG1-210ENST00000596332 TRAV27A0A087WT01 109 aa9.35□□□□□ -0.91
LIG1-210ENST00000596332 MSTNO14793 375 aa9.35□□□□□ -0.91
LIG1-210ENST00000596332 VAMP5O95183 116 aa9.35□□□□□ -0.91
LIG1-210ENST00000596332 IGFBP1P08833 259 aaPredicted RBP9.35□□□□□ -0.91
LIG1-210ENST00000596332 OR3A2P47893 321 aa9.35□□□□□ -0.91
LIG1-210ENST00000596332 SELENOPP49908 381 aa9.35□□□□□ -0.91
LIG1-210ENST00000596332 SMSP52788 366 aa9.35□□□□□ -0.91
LIG1-210ENST00000596332 PER3P56645 1201 aa9.35□□□□□ -0.91
LIG1-210ENST00000596332 SMIM11AP58511 58 aa9.35□□□□□ -0.91
LIG1-210ENST00000596332 RUNX1T1Q06455 604 aa9.35□□□□□ -0.91
LIG1-210ENST00000596332 PUDPQ08623 228 aa9.35□□□□□ -0.91
LIG1-210ENST00000596332 PMS2P3Q13401 168 aa9.35□□□□□ -0.91
LIG1-210ENST00000596332 MICAQ29983 383 aa9.35□□□□□ -0.91
LIG1-210ENST00000596332 PHYHD1Q5SRE7 291 aa9.35□□□□□ -0.91
LIG1-210ENST00000596332 GTF2IRD2BQ6EKJ0 949 aa9.35□□□□□ -0.91
LIG1-210ENST00000596332 TMEM225Q6GV28 225 aa9.35□□□□□ -0.91
LIG1-210ENST00000596332 PPP4R4Q6NUP7 873 aa9.35□□□□□ -0.91
LIG1-210ENST00000596332 PXKQ7Z7A4 578 aa9.35□□□□□ -0.91
LIG1-210ENST00000596332 AMIGO2Q86SJ2 522 aa9.35□□□□□ -0.91
LIG1-210ENST00000596332 GTF2IRD2Q86UP8 949 aa9.35□□□□□ -0.91
LIG1-210ENST00000596332 GABRG1Q8N1C3 465 aa9.35□□□□□ -0.91
LIG1-210ENST00000596332 NMD3Q96D46 503 aaKnown RBP9.35□□□□□ -0.91
LIG1-210ENST00000596332 PKP2Q99959 881 aa9.35□□□□□ -0.91
LIG1-210ENST00000596332 NIPSNAP1Q9BPW8 284 aa9.35□□□□□ -0.91
LIG1-210ENST00000596332 MED29Q9NX70 200 aa9.35□□□□□ -0.91
LIG1-210ENST00000596332 FOXD3Q9UJU5 478 aaPredicted RBP9.35□□□□□ -0.91
LIG1-210ENST00000596332 FREM1Q5H8C1 2179 aa9.34□□□□□ -0.91
LIG1-210ENST00000596332 EFCAB9A8MZ26 197 aa9.34□□□□□ -0.91
LIG1-210ENST00000596332 MCIDASD6RGH6 385 aa9.34□□□□□ -0.91
LIG1-210ENST00000596332 BLOC1S5-TXNDC5H3BN57 136 aa9.34□□□□□ -0.91
LIG1-210ENST00000596332 GPR171O14626 319 aa9.34□□□□□ -0.91
LIG1-210ENST00000596332 CIB2O75838 187 aa9.34□□□□□ -0.91
LIG1-210ENST00000596332 F13BP05160 661 aa9.34□□□□□ -0.91
LIG1-210ENST00000596332 ADORA3P0DMS8 318 aa9.34□□□□□ -0.91
LIG1-210ENST00000596332 HOXB6P17509 224 aaKnown RBP9.34□□□□□ -0.91
LIG1-210ENST00000596332 FPR3P25089 353 aa9.34□□□□□ -0.91
LIG1-210ENST00000596332 CCKARP32238 428 aa9.34□□□□□ -0.91
LIG1-210ENST00000596332 IFNA8P32881 189 aa9.34□□□□□ -0.91
LIG1-210ENST00000596332 PCYT1AP49585 367 aa9.34□□□□□ -0.91
LIG1-210ENST00000596332 FAM27E3Q08E93 113 aa9.34□□□□□ -0.91
LIG1-210ENST00000596332 HIST3H3Q16695 136 aa9.34□□□□□ -0.91
LIG1-210ENST00000596332 SLC25A35Q3KQZ1 300 aa9.34□□□□□ -0.91
LIG1-210ENST00000596332 ZBED5Q49AG3 693 aa9.34□□□□□ -0.91
LIG1-210ENST00000596332 ZNF362Q5T0B9 420 aaPredicted RBP9.34□□□□□ -0.91
LIG1-210ENST00000596332 ARMC4Q5T2S8 1044 aa9.34□□□□□ -0.91
LIG1-210ENST00000596332 TSPO2Q5TGU0 170 aa9.34□□□□□ -0.91
LIG1-210ENST00000596332 CD300LDQ6UXZ3 194 aa9.34□□□□□ -0.91
LIG1-210ENST00000596332 FAM122BQ7Z309 247 aa9.34□□□□□ -0.91
LIG1-210ENST00000596332 GALNT5Q7Z7M9 940 aa9.34□□□□□ -0.91
LIG1-210ENST00000596332 C10orf53Q8N6V4 93 aa9.34□□□□□ -0.91
LIG1-210ENST00000596332 CNEP1R1Q8N9A8 125 aa9.34□□□□□ -0.91
LIG1-210ENST00000596332 OR8D4Q8NGM9 314 aa9.34□□□□□ -0.91
LIG1-210ENST00000596332 OR51A7Q8NH64 312 aa9.34□□□□□ -0.91
LIG1-210ENST00000596332 ZHX1-C8orf76Q96EF9 292 aa9.34□□□□□ -0.91
LIG1-210ENST00000596332 ZNF837Q96EG3 531 aaPredicted RBP9.34□□□□□ -0.91
LIG1-210ENST00000596332 OR2M2Q96R28 347 aa9.34□□□□□ -0.91
LIG1-210ENST00000596332 EMC6Q9BV81 110 aa9.34□□□□□ -0.91
LIG1-210ENST00000596332 ASPNQ9BXN1 380 aa9.34□□□□□ -0.91
LIG1-210ENST00000596332 DGCR6LQ9BY27 220 aa9.34□□□□□ -0.91
LIG1-210ENST00000596332 MRPL13Q9BYD1 178 aaKnown RBP9.34□□□□□ -0.91
LIG1-210ENST00000596332 PIGMQ9H3S5 423 aa9.34□□□□□ -0.91
LIG1-210ENST00000596332 C12orf49Q9H741 205 aa9.34□□□□□ -0.91
LIG1-210ENST00000596332 S100A14Q9HCY8 104 aa9.34□□□□□ -0.91
LIG1-210ENST00000596332 SLC7A10Q9NS82 523 aa9.34□□□□□ -0.91
LIG1-210ENST00000596332 SAMHD1Q9Y3Z3 626 aaKnown RBP9.34□□□□□ -0.91
LIG1-210ENST00000596332 SLC35F4A4IF30 521 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 ARRDC5A6NEK1 342 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 ERICH4A6NGS2 130 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 UNC119BA6NIH7 251 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 NPIPB13A6NJU9 1138 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 FAM90A27PA6NNH2 459 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 NPIPB4C9JG80 1138 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 C11orf98E9PRG8 122 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 DVL2O14641 736 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 HNRNPRO43390 633 aaKnown RBP9.33□□□□□ -0.92
LIG1-210ENST00000596332 OR10H3O60404 316 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 UPK3AO75631 287 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 STAMBPO95630 424 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 IFNGR1P15260 489 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 DNAJA1P31689 397 aaKnown RBP9.33□□□□□ -0.92
LIG1-210ENST00000596332 SLC9A3P48764 834 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 DAPP51397 102 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 CLDN17P56750 224 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 POU3F1Q03052 451 aaPredicted RBP9.33□□□□□ -0.92
LIG1-210ENST00000596332 TSPAN31Q12999 210 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 GK3PQ14409 553 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 EEF1A1P5Q5VTE0 462 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 FAHD1Q6P587 224 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms