RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 BAG5Q9UL15 447 aa13.25□□□□□ -0.29
TRIM28-205ENST00000595028 AMDHD2Q9Y303 409 aa13.25□□□□□ -0.29
TRIM28-205ENST00000595028 HEATR1Q9H583 2144 aaKnown RBP13.24□□□□□ -0.29
TRIM28-205ENST00000595028 LOC102725191A0A1B0GVB3 256 aa13.24□□□□□ -0.29
TRIM28-205ENST00000595028 SHISA9B4DS77 424 aa13.24□□□□□ -0.29
TRIM28-205ENST00000595028 LRRN3E7EW58 273 aa13.24□□□□□ -0.29
TRIM28-205ENST00000595028 ABCD4O14678 606 aa13.24□□□□□ -0.29
TRIM28-205ENST00000595028 AKAP8O43823 692 aaKnown RBP13.24□□□□□ -0.29
TRIM28-205ENST00000595028 UPK3AO75631 287 aa13.24□□□□□ -0.29
TRIM28-205ENST00000595028 KRT33AO76009 404 aa13.24□□□□□ -0.29
TRIM28-205ENST00000595028 HPRP00739 348 aa13.24□□□□□ -0.29
TRIM28-205ENST00000595028 MT-ATP6P00846 226 aa13.24□□□□□ -0.29
TRIM28-205ENST00000595028 NQO1P15559 274 aaKnown RBP13.24□□□□□ -0.29
TRIM28-205ENST00000595028 ZNF83P51522 516 aa13.24□□□□□ -0.29
TRIM28-205ENST00000595028 SEC24CP53992 1094 aa13.24□□□□□ -0.29
TRIM28-205ENST00000595028 CDH11P55287 796 aa13.24□□□□□ -0.29
TRIM28-205ENST00000595028 ZNF672Q499Z4 452 aaPredicted RBP13.24□□□□□ -0.29
TRIM28-205ENST00000595028 LRRC23Q53EV4 343 aaPredicted RBP13.24□□□□□ -0.29
TRIM28-205ENST00000595028 C1QTNF12Q5T7M4 302 aa13.24□□□□□ -0.29
TRIM28-205ENST00000595028 SHEQ5VZ18 495 aa13.24□□□□□ -0.29
TRIM28-205ENST00000595028 KLHL17Q6TDP4 642 aa13.24□□□□□ -0.29
TRIM28-205ENST00000595028 TMEM108Q6UXF1 575 aa13.24□□□□□ -0.29
TRIM28-205ENST00000595028 LINGO2Q7L985 606 aa13.24□□□□□ -0.29
TRIM28-205ENST00000595028 CARM1Q86X55 608 aa13.24□□□□□ -0.29
TRIM28-205ENST00000595028 UEVLDQ8IX04 471 aa13.24□□□□□ -0.29
TRIM28-205ENST00000595028 MICU2Q8IYU8 434 aa13.24□□□□□ -0.29
TRIM28-205ENST00000595028 C10orf53Q8N6V4 93 aa13.24□□□□□ -0.29
TRIM28-205ENST00000595028 WDR31Q8NA23 367 aa13.24□□□□□ -0.29
TRIM28-205ENST00000595028 PERPQ96FX8 193 aa13.24□□□□□ -0.29
TRIM28-205ENST00000595028 BOD1Q96IK1 185 aa13.24□□□□□ -0.29
TRIM28-205ENST00000595028 MPP4Q96JB8 637 aa13.24□□□□□ -0.29
TRIM28-205ENST00000595028 ELAC2Q9BQ52 826 aaKnown RBP13.24□□□□□ -0.29
TRIM28-205ENST00000595028 ZNF426Q9BUY5 554 aa13.24□□□□□ -0.29
TRIM28-205ENST00000595028 GSX2Q9BZM3 304 aa13.24□□□□□ -0.29
TRIM28-205ENST00000595028 NSRP1Q9H0G5 558 aaKnown RBP13.24□□□□□ -0.29
TRIM28-205ENST00000595028 MRPL39Q9NYK5 338 aaKnown RBP13.24□□□□□ -0.29
TRIM28-205ENST00000595028 AP3M1Q9Y2T2 418 aa13.24□□□□□ -0.29
TRIM28-205ENST00000595028 SH3GLB1Q9Y371 365 aa13.24□□□□□ -0.29
TRIM28-205ENST00000595028 MAGED1Q9Y5V3 778 aaPredicted RBP13.24□□□□□ -0.29
TRIM28-205ENST00000595028 MXRA5Q9NR99 2828 aa13.24□□□□□ -0.29
TRIM28-205ENST00000595028 ELOVL7A1L3X0 281 aa13.23□□□□□ -0.29
TRIM28-205ENST00000595028 ARHGEF9O43307 516 aa13.23□□□□□ -0.29
TRIM28-205ENST00000595028 SLC43A1O75387 559 aa13.23□□□□□ -0.29
TRIM28-205ENST00000595028 IFNA14P01570 189 aa13.23□□□□□ -0.29
TRIM28-205ENST00000595028 DANCRP0C864 163 aa13.23□□□□□ -0.29
TRIM28-205ENST00000595028 PAX1P15863 534 aa13.23□□□□□ -0.29
TRIM28-205ENST00000595028 CDH2P19022 906 aaPredicted RBP13.23□□□□□ -0.29
TRIM28-205ENST00000595028 TNFRSF1BP20333 461 aa13.23□□□□□ -0.29
TRIM28-205ENST00000595028 PTAFRP25105 342 aa13.23□□□□□ -0.29
TRIM28-205ENST00000595028 PTH2RP49190 550 aa13.23□□□□□ -0.29
TRIM28-205ENST00000595028 SH3BGRP55822 239 aaPredicted RBP13.23□□□□□ -0.29
TRIM28-205ENST00000595028 IL1RL1Q01638 556 aa13.23□□□□□ -0.29
TRIM28-205ENST00000595028 POU3F1Q03052 451 aaPredicted RBP13.23□□□□□ -0.29
TRIM28-205ENST00000595028 PUDPQ08623 228 aa13.23□□□□□ -0.29
TRIM28-205ENST00000595028 SPOCK1Q08629 439 aa13.23□□□□□ -0.29
TRIM28-205ENST00000595028 PMS2P3Q13401 168 aa13.23□□□□□ -0.29
TRIM28-205ENST00000595028 HIKESHIQ53FT3 197 aa13.23□□□□□ -0.29
TRIM28-205ENST00000595028 CYBRD1Q53TN4 286 aa13.23□□□□□ -0.29
TRIM28-205ENST00000595028 KLHL24Q6TFL4 600 aa13.23□□□□□ -0.29
TRIM28-205ENST00000595028 CLEC9AQ6UXN8 241 aa13.23□□□□□ -0.29
TRIM28-205ENST00000595028 DEF8Q6ZN54 512 aa13.23□□□□□ -0.29
TRIM28-205ENST00000595028 SLC15A3Q8IY34 581 aa13.23□□□□□ -0.29
TRIM28-205ENST00000595028 TMEM123Q8N131 208 aa13.23□□□□□ -0.29
TRIM28-205ENST00000595028 OR1K1Q8NGR3 316 aa13.23□□□□□ -0.29
TRIM28-205ENST00000595028 C18orf12Q96KH6 178 aa13.23□□□□□ -0.29
TRIM28-205ENST00000595028 SLC19A3Q9BZV2 496 aa13.23□□□□□ -0.29
TRIM28-205ENST00000595028 FAM107BQ9H098 131 aa13.23□□□□□ -0.29
TRIM28-205ENST00000595028 MYLK2Q9H1R3 596 aa13.23□□□□□ -0.29
TRIM28-205ENST00000595028 CXorf56Q9H5V9 222 aa13.23□□□□□ -0.29
TRIM28-205ENST00000595028 SLC7A7Q9UM01 511 aa13.23□□□□□ -0.29
TRIM28-205ENST00000595028 MGAT4BQ9UQ53 548 aa13.23□□□□□ -0.29
TRIM28-205ENST00000595028 MS4A18H0YCH9 400 aa13.22□□□□□ -0.29
TRIM28-205ENST00000595028 M0R1B8 84 aa13.22□□□□□ -0.29
TRIM28-205ENST00000595028 KPNA4O00629 521 aaPredicted RBP13.22□□□□□ -0.29
TRIM28-205ENST00000595028 SOD3P08294 240 aa13.22□□□□□ -0.29
TRIM28-205ENST00000595028 HLA-DOBP13765 273 aa13.22□□□□□ -0.29
TRIM28-205ENST00000595028 DRD4P21917 467 aa13.22□□□□□ -0.29
TRIM28-205ENST00000595028 CD40P25942 277 aa13.22□□□□□ -0.29
TRIM28-205ENST00000595028 LSP1P33241 339 aa13.22□□□□□ -0.29
TRIM28-205ENST00000595028 KDELR2P33947 212 aa13.22□□□□□ -0.29
TRIM28-205ENST00000595028 NUDT2P50583 147 aa13.22□□□□□ -0.29
TRIM28-205ENST00000595028 SLC7A2P52569 658 aa13.22□□□□□ -0.29
TRIM28-205ENST00000595028 RPS4XP62701 263 aaKnown RBP13.22□□□□□ -0.29
TRIM28-205ENST00000595028 ROR2Q01974 943 aaKnown RBP13.22□□□□□ -0.29
TRIM28-205ENST00000595028 ZNF74Q16587 644 aa13.22□□□□□ -0.29
TRIM28-205ENST00000595028 MS4A18Q3C1V0 323 aa13.22□□□□□ -0.29
TRIM28-205ENST00000595028 TBRG1Q3YBR2 411 aa13.22□□□□□ -0.29
TRIM28-205ENST00000595028 HMBOX1Q6NT76 420 aa13.22□□□□□ -0.29
TRIM28-205ENST00000595028 C8orf82Q6P1X6 216 aaPredicted RBP13.22□□□□□ -0.29
TRIM28-205ENST00000595028 TTC33Q6PID6 262 aaPredicted RBP13.22□□□□□ -0.29
TRIM28-205ENST00000595028 HACD2Q6Y1H2 254 aa13.22□□□□□ -0.29
TRIM28-205ENST00000595028 PIAS4Q8N2W9 510 aaPredicted RBP13.22□□□□□ -0.29
TRIM28-205ENST00000595028 PIK3C3Q8NEB9 887 aa13.22□□□□□ -0.29
TRIM28-205ENST00000595028 ANKK1Q8NFD2 765 aa13.22□□□□□ -0.29
TRIM28-205ENST00000595028 OR5J2Q8NH18 312 aa13.22□□□□□ -0.29
TRIM28-205ENST00000595028 RADILQ96JH8 1075 aa13.22□□□□□ -0.29
TRIM28-205ENST00000595028 OR2M2Q96R28 347 aa13.22□□□□□ -0.29
TRIM28-205ENST00000595028 PRSS27Q9BQR3 290 aa13.22□□□□□ -0.29
TRIM28-205ENST00000595028 POLR2J2Q9GZM3 115 aaKnown RBP13.22□□□□□ -0.29
TRIM28-205ENST00000595028 POLR2J3Q9H1A7 115 aaKnown RBP13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms