RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 SPOCK1Q08629 439 aa13.37□□□□□ -0.27
TRIM28-203ENST00000593582 PMS2P3Q13401 168 aa13.37□□□□□ -0.27
TRIM28-203ENST00000593582 NPTX1Q15818 432 aa13.37□□□□□ -0.27
TRIM28-203ENST00000593582 ENTPD8Q5MY95 495 aa13.37□□□□□ -0.27
TRIM28-203ENST00000593582 AGAP6Q5VW22 663 aa13.37□□□□□ -0.27
TRIM28-203ENST00000593582 ERICH5Q6P6B1 374 aa13.37□□□□□ -0.27
TRIM28-203ENST00000593582 CCDC80Q76M96 950 aa13.37□□□□□ -0.27
TRIM28-203ENST00000593582 CALHM3Q86XJ0 350 aa13.37□□□□□ -0.27
TRIM28-203ENST00000593582 UEVLDQ8IX04 471 aa13.37□□□□□ -0.27
TRIM28-203ENST00000593582 GPR137CQ8N3F9 429 aa13.37□□□□□ -0.27
TRIM28-203ENST00000593582 ANKK1Q8NFD2 765 aa13.37□□□□□ -0.27
TRIM28-203ENST00000593582 OR1K1Q8NGR3 316 aa13.37□□□□□ -0.27
TRIM28-203ENST00000593582 ADAMTS16Q8TE57 1224 aa13.37□□□□□ -0.27
TRIM28-203ENST00000593582 PROX1Q92786 737 aa13.37□□□□□ -0.27
TRIM28-203ENST00000593582 SLC41A3Q96GZ6 507 aa13.37□□□□□ -0.27
TRIM28-203ENST00000593582 ZNF317Q96PQ6 595 aaPredicted RBP13.37□□□□□ -0.27
TRIM28-203ENST00000593582 FKRPQ9H9S5 495 aa13.37□□□□□ -0.27
TRIM28-203ENST00000593582 MRPL39Q9NYK5 338 aaKnown RBP13.37□□□□□ -0.27
TRIM28-203ENST00000593582 TRAPPC13A5PLN9 417 aa13.36□□□□□ -0.27
TRIM28-203ENST00000593582 TRIM64A6NGJ6 449 aa13.36□□□□□ -0.27
TRIM28-203ENST00000593582 TRIM64BA6NI03 449 aa13.36□□□□□ -0.27
TRIM28-203ENST00000593582 MS4A18H0YCH9 400 aa13.36□□□□□ -0.27
TRIM28-203ENST00000593582 BGLAPP02818 100 aa13.36□□□□□ -0.27
TRIM28-203ENST00000593582 PAX7P23759 505 aa13.36□□□□□ -0.27
TRIM28-203ENST00000593582 PUDPQ08623 228 aa13.36□□□□□ -0.27
TRIM28-203ENST00000593582 VEZF1Q14119 521 aa13.36□□□□□ -0.27
TRIM28-203ENST00000593582 ETFDHQ16134 617 aa13.36□□□□□ -0.27
TRIM28-203ENST00000593582 MS4A18Q3C1V0 323 aa13.36□□□□□ -0.27
TRIM28-203ENST00000593582 TBRG1Q3YBR2 411 aa13.36□□□□□ -0.27
TRIM28-203ENST00000593582 ANKRD16Q6P6B7 361 aa13.36□□□□□ -0.27
TRIM28-203ENST00000593582 LINC00114Q6XXX2 140 aa13.36□□□□□ -0.27
TRIM28-203ENST00000593582 LINGO2Q7L985 606 aa13.36□□□□□ -0.27
TRIM28-203ENST00000593582 DTX2Q86UW9 622 aa13.36□□□□□ -0.27
TRIM28-203ENST00000593582 RBM45Q8IUH3 476 aaKnown RBP13.36□□□□□ -0.27
TRIM28-203ENST00000593582 PIK3C3Q8NEB9 887 aa13.36□□□□□ -0.27
TRIM28-203ENST00000593582 COX4I2Q96KJ9 171 aa13.36□□□□□ -0.27
TRIM28-203ENST00000593582 MOGAT1Q96PD6 335 aa13.36□□□□□ -0.27
TRIM28-203ENST00000593582 SMR3AQ99954 134 aa13.36□□□□□ -0.27
TRIM28-203ENST00000593582 DHRS9Q9BPW9 319 aa13.36□□□□□ -0.27
TRIM28-203ENST00000593582 TRAF4Q9BUZ4 470 aaPredicted RBP13.36□□□□□ -0.27
TRIM28-203ENST00000593582 GRIP2Q9C0E4 1043 aa13.36□□□□□ -0.27
TRIM28-203ENST00000593582 PCDHAC1Q9H158 963 aa13.36□□□□□ -0.27
TRIM28-203ENST00000593582 ARMCX1Q9P291 453 aa13.36□□□□□ -0.27
TRIM28-203ENST00000593582 BAG5Q9UL15 447 aa13.36□□□□□ -0.27
TRIM28-203ENST00000593582 CADP27708 2225 aa13.35□□□□□ -0.27
TRIM28-203ENST00000593582 E7EQL1 145 aa13.35□□□□□ -0.27
TRIM28-203ENST00000593582 RPL36A-HNRNPH2H7BZ11 118 aa13.35□□□□□ -0.27
TRIM28-203ENST00000593582 TRAF3IP2O43734 574 aaPredicted RBP13.35□□□□□ -0.27
TRIM28-203ENST00000593582 HPRP00739 348 aa13.35□□□□□ -0.27
TRIM28-203ENST00000593582 IFNA14P01570 189 aa13.35□□□□□ -0.27
TRIM28-203ENST00000593582 CDKN1AP38936 164 aa13.35□□□□□ -0.27
TRIM28-203ENST00000593582 CRYBA2P53672 197 aa13.35□□□□□ -0.27
TRIM28-203ENST00000593582 POU3F1Q03052 451 aaPredicted RBP13.35□□□□□ -0.27
TRIM28-203ENST00000593582 LTBQ06643 244 aa13.35□□□□□ -0.27
TRIM28-203ENST00000593582 TTC33Q6PID6 262 aaPredicted RBP13.35□□□□□ -0.27
TRIM28-203ENST00000593582 CLEC9AQ6UXN8 241 aa13.35□□□□□ -0.27
TRIM28-203ENST00000593582 FBXL14Q8N1E6 418 aa13.35□□□□□ -0.27
TRIM28-203ENST00000593582 CIARTQ8N365 385 aaPredicted RBP13.35□□□□□ -0.27
TRIM28-203ENST00000593582 OR4D11Q8NGI4 311 aa13.35□□□□□ -0.27
TRIM28-203ENST00000593582 MAGEE2Q8TD90 523 aaPredicted RBP13.35□□□□□ -0.27
TRIM28-203ENST00000593582 C10orf82Q8WW14 230 aa13.35□□□□□ -0.27
TRIM28-203ENST00000593582 BCL2L2Q92843 193 aaPredicted RBP13.35□□□□□ -0.27
TRIM28-203ENST00000593582 MPP4Q96JB8 637 aa13.35□□□□□ -0.27
TRIM28-203ENST00000593582 ZNF583Q96ND8 569 aa13.35□□□□□ -0.27
TRIM28-203ENST00000593582 OR2M2Q96R28 347 aa13.35□□□□□ -0.27
TRIM28-203ENST00000593582 MOV10Q9HCE1 1003 aaKnown RBP13.35□□□□□ -0.27
TRIM28-203ENST00000593582 SLC7A7Q9UM01 511 aa13.35□□□□□ -0.27
TRIM28-203ENST00000593582 SH3GLB1Q9Y371 365 aa13.35□□□□□ -0.27
TRIM28-203ENST00000593582 NOX1Q9Y5S8 564 aa13.35□□□□□ -0.27
TRIM28-203ENST00000593582 USF3Q68DE3 2245 aa13.35□□□□□ -0.27
TRIM28-203ENST00000593582 A0A096LPE4 126 aa13.34□□□□□ -0.27
TRIM28-203ENST00000593582 A0A1W2PPZ6 126 aa13.34□□□□□ -0.27
TRIM28-203ENST00000593582 LRRN3E7EW58 273 aa13.34□□□□□ -0.27
TRIM28-203ENST00000593582 PLPP3O14495 311 aa13.34□□□□□ -0.27
TRIM28-203ENST00000593582 SMAD7O15105 426 aaKnown RBP13.34□□□□□ -0.27
TRIM28-203ENST00000593582 ATP8B1O43520 1251 aa13.34□□□□□ -0.27
TRIM28-203ENST00000593582 CCDC22O60826 627 aa13.34□□□□□ -0.27
TRIM28-203ENST00000593582 OR6A2O95222 327 aa13.34□□□□□ -0.27
TRIM28-203ENST00000593582 CD8AP01732 235 aa13.34□□□□□ -0.27
TRIM28-203ENST00000593582 HOXB1P14653 301 aaPredicted RBP13.34□□□□□ -0.27
TRIM28-203ENST00000593582 AHCYP23526 432 aa13.34□□□□□ -0.27
TRIM28-203ENST00000593582 TTKP33981 857 aa13.34□□□□□ -0.27
TRIM28-203ENST00000593582 FABP6P51161 128 aa13.34□□□□□ -0.27
TRIM28-203ENST00000593582 ZNF544Q6NX49 715 aa13.34□□□□□ -0.27
TRIM28-203ENST00000593582 PXKQ7Z7A4 578 aa13.34□□□□□ -0.27
TRIM28-203ENST00000593582 TMEM123Q8N131 208 aa13.34□□□□□ -0.27
TRIM28-203ENST00000593582 MUC15Q8N387 334 aa13.34□□□□□ -0.27
TRIM28-203ENST00000593582 OR5J2Q8NH18 312 aa13.34□□□□□ -0.27
TRIM28-203ENST00000593582 RP9Q8TA86 221 aaKnown RBP13.34□□□□□ -0.27
TRIM28-203ENST00000593582 HS6ST2Q96MM7 605 aa13.34□□□□□ -0.27
TRIM28-203ENST00000593582 KCNS3Q9BQ31 491 aa13.34□□□□□ -0.27
TRIM28-203ENST00000593582 SLC19A3Q9BZV2 496 aa13.34□□□□□ -0.27
TRIM28-203ENST00000593582 CRLF2Q9HC73 371 aa13.34□□□□□ -0.27
TRIM28-203ENST00000593582 GPR35Q9HC97 309 aa13.34□□□□□ -0.27
TRIM28-203ENST00000593582 CBLN4Q9NTU7 201 aa13.34□□□□□ -0.27
TRIM28-203ENST00000593582 AP3M1Q9Y2T2 418 aa13.34□□□□□ -0.27
TRIM28-203ENST00000593582 ATP23Q9Y6H3 246 aa13.34□□□□□ -0.27
TRIM28-203ENST00000593582 ARPC4-TTLL3A0A0A6YYG9 625 aa13.33□□□□□ -0.28
TRIM28-203ENST00000593582 ZNF726A6NNF4 738 aa13.33□□□□□ -0.28
TRIM28-203ENST00000593582 FAM220BPB1ANY3 271 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms